Lag0002629 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002629
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transcription initiation factor TFIID subunit 13
Location	chr4: 44369076 .. 44371877 (-)
RNA-Seq Expression	Lag0002629
Synteny	Lag0002629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACATGTCGCCGACATTTCCATGGAAATGTCGACATGTCGTCGACATGGGGGAAGATCGAAACTTCCCCCCACGGAAATGTCGACACTGTCGACATACCGACATTTCCATGGAAATGTCGGTATGTCGATGGAAATTTGATACCTTGATTGTCACACAACGTGTACTAACAACAGAGGTCGGTGATATGGACTTGTAAAAATAAAAATATAGACATATCAATAAGAAAAAATATTGGTAAAATTAAATATTCTCCCTAAAAAAAACAAAACCTCACTAAAGAGGCCGAAATTTTGACAAATTAATAAATCTTACCCTCGTCGTTCCTCCTGATCGGACCCTTCTGCAGAAGAGTACTGTTAGCTCCGGCGAATTTCCTGCGGTGACTCGAACTCTCCGTCTCCGGTAAGAATCTTGGCGTCCACTCTTAGCAGTTTCTAAACTTCCTTCTTTCTTTTCATCTTCAATGGCGTATATTTTATCAACATATTATAAGAACAATCGGACTTCATTAGAAAGTAAATTTACTTCACTTTTCTGAGGCTCCACTTTGAAATTCCCCCCTTCTGTTTCAATGCTTGTTTGATTTTGTAACTTTTTATCAGGGTTTATCTTCTTTCCATCGGTTCGTGGTGTTTCGTGTTTTGGGTTATAGATTATAATACGTATATTCGGTAAAATATTTGTGAATATTTCAATTTAGTGCTTCGATGATTATACAGATGTTTGATATTGTTTAATCTGACGATTTTACGATTTTACCTTCACGTTTAGATAATTTTCGTCTTGATTATTGGTAGAAAGATCGTGAAGATGAACAATCCATCTGCCGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAATTACCTTTCATTTTCTTTCTGTTTTCTTCTTCAGCATGAGTTTGTATGTGAAAATGTAATCATGTGCTTCTCTCTCTTTTTAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATGTAAGTGAAGTTATCATATACTGCCTTTGTTTTAACTTGTATAAGAAGGATGATTTTGTATGTTTCCATGGAAATTCAATTCTGAATTTTTCATTGTGATACTTTTCTGGTTTTTTCTGATCTTCCCTGGCTGTATATCTTTTGTTGAAGTCTTCTGTAGAGCTTAGAAAGTTAGTAGATTCCTGTAGATAAAATTTTGGTTGTTTAGCTCTTCTTGGGAGTCTAGAACAGGTAGATAGGAATTCTTTGAAGATAGTGCGAAGATCTTCAATTTCACAAACCCATCATAGGAACAGACATCTCCATGATTTCTGATATGTTAAGTTTTATTGCAAGTTGCCACCCCGTCCCCCCAGCAAAATGCATACCTGCCTGAAGAATATTAGAAGAAAGCTAAACAATATTCCTTGTATTTTCCAGAATTGAGCTCAAGCTTCCAATCCTGTAAATTTCAACAATGAAATAAGATACCAAGCAAGCCAAAAGAATAGAATTATAATTTCGAAATTTTGGAGTTATGTGAAATGGCTGGGTTTTGCGCTTCTTAATGTTTACTAGGAGCCATGACAAGGTTTCTACTGGCTTCCTCTCTCTTAGTCACAAGTTCTTAGCAAATCAGAAATAATGTAGGAGCGAGGAAGAAATCTAATCTTTTGTGTCCTTCATTTACAAAAAAAAGAAAAGAAAATCTGTTCATGAGTTTTTTTATGCTGCATTACAGCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTTGTAAGAATTTCTGTGCCGTTATTATGTCTCCTTTTCTAAACAAACGTCGAGTTAGGATTATCTGAAGTATATGTTCTTCTCAGGTGTATAAAGCCCAGGAAATTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGTACATTACATAGTTTATTTCTTTGTGTTTCCATATCAATCAATGAACCTAAGTTCTATCGTTATTTGGCTATGCAACATGGCATCCTTTATCTTAAGAAATCAGCATATTGGAATTTTCAAGTGGCGGTTGTAACTCTTTATAAAATTTTCATAGGCAATACTAATATGATAATCATTATTTCTATTTTTTTCCCCTGCATTCTGTAGGCATACATTTCTTGTGTACCAGCTTTTGTTATAGATCTTCATTCCAAGTGATTGTTCGGTTTCGTGATTACGTTCAAAGATTAGCTCCGTTGTTTTGATTCAACATTAGGTGCAAGCAAATGGTTACACCCCATATACTTCCCAAATGGTCTTAGTTTATTGGGTTAAGCTCTGAGTTTGTCCATACCAAAGGGCCAGGGAGCAGAGGATTTTGAAATTAAGGATACATTTATTAGTTCTGTAGAAAGTTCATTGTGAAGAATGCTTATTGGACAGAATATATGTTAGCTGGTAGAAAGTTCATATCCCAGTTCTTTCCTTTCTTGTGGGGAAAAGAATCTAGGAAATATTCCCAGTGCCACTGTTGATGGCCTCCCTATGGCTTAACTTTTAGAAATCTCAAACCACCCGGTTGGGATAATTTAACTAAGATTCTATATCGAAACTTAATCTATACGATTTTCTGTAATGTAGGACCCACGCAAACTTAACCGTTCGACCGAACTGCTGTCAATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAGTTGGATCAGTAG

mRNA sequence

ATGTCGACATGTCGCCGACATTTCCATGGAAATGTCGACATGTCGTCGACATGGGGGAAGATCGAAACTTCCCCCCACGGAAATGTCGACACTGTCGACATACCGACATTTCCATGGAAATGTCGAGGCCGAAATTTTGACAAATTAATAAATCTTACCCTCGTCGTTCCTCCTGATCGGACCCTTCTGCAGAAGAGTACTGTTAGCTCCGGCGAATTTCCTGCGGTGACTCGAACTCTCCGTCTCCGAAAGATCGTGAAGATGAACAATCCATCTGCCGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTTGTGTATAAAGCCCAGGAAATTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAACTTAACCGTTCGACCGAACTGCTGTCAATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAGTTGGATCAGTAG

Coding sequence (CDS)

ATGTCGACATGTCGCCGACATTTCCATGGAAATGTCGACATGTCGTCGACATGGGGGAAGATCGAAACTTCCCCCCACGGAAATGTCGACACTGTCGACATACCGACATTTCCATGGAAATGTCGAGGCCGAAATTTTGACAAATTAATAAATCTTACCCTCGTCGTTCCTCCTGATCGGACCCTTCTGCAGAAGAGTACTGTTAGCTCCGGCGAATTTCCTGCGGTGACTCGAACTCTCCGTCTCCGAAAGATCGTGAAGATGAACAATCCATCTGCCGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTTGTGTATAAAGCCCAGGAAATTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAACTTAACCGTTCGACCGAACTGCTGTCAATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAGTTGGATCAGTAG

Protein sequence

MSTCRRHFHGNVDMSSTWGKIETSPHGNVDTVDIPTFPWKCRGRNFDKLINLTLVVPPDRTLLQKSTVSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

Homology

[Close]

BLAST of Lag0002629 vs. NCBI nr
Match: TYK18217.1 (transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-65
Identity = 140/155 (90.32%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 68  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY 127
           +SS  FP          IVKMNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY
Sbjct: 14  LSSSSFP----------IVKMNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY 73

Query: 128 GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS 187
           GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Sbjct: 74  GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS 133

Query: 188 TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD 223
           TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Sbjct: 134 TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD 158

[Close]

BLAST of Lag0002629 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 9.3e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLDQ 224
           EDKLKKAFEEEDKLDQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Lag0002629 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-64
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLDQ 224
           EDKLKKAFEEEDK+DQ
Sbjct: 121 EDKLKKAFEEEDKMDQ 136

[Close]

BLAST of Lag0002629 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >KAA0046681.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-63
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLD 223
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of Lag0002629 vs. NCBI nr
Match: XP_022991537.1 (transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_022991538.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >KAG6575785.1 Transcription initiation factor TFIID subunit 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014326.1 Transcription initiation factor TFIID subunit 13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 3.0e-63
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLDQ 224
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.8e-37
Identity = 82/126 (65.08%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 89  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMED 148
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 149 IVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 208
           IVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF+
Sbjct: 63  IVVEYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFD 122

Query: 209 IDEDKL 212
           +DE +L
Sbjct: 123 VDEKEL 124

[Close]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 112 KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 171
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 172 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 206
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 112 KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 171
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 172 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 206
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 112 KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 171
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 172 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 206
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 112 KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 171
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 172 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 206
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lag0002629 vs. ExPASy TrEMBL
Match: A0A5D3D2Q2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001560 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 7.0e-66
Identity = 140/155 (90.32%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 68  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY 127
           +SS  FP          IVKMNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY
Sbjct: 14  LSSSSFP----------IVKMNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMY 73

Query: 128 GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS 187
           GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Sbjct: 74  GFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS 133

Query: 188 TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD 223
           TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Sbjct: 134 TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD 158

[Close]

BLAST of Lag0002629 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.5e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLDQ 224
           EDKLKKAFEEEDKLDQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Lag0002629 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 5.0e-64
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLD 223
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of Lag0002629 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 5.0e-64
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLD 223
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of Lag0002629 vs. ExPASy TrEMBL
Match: A0A6J1JWI2 (transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111488122 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.5e-63
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 88  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 147
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 148 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 207
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 208 EDKLKKAFEEEDKLDQ 224
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Lag0002629 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-38
Identity = 82/126 (65.08%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 89  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMED 148
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 149 IVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 208
           IVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF+
Sbjct: 63  IVVEYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFD 122

Query: 209 IDEDKL 212
           +DE +L
Sbjct: 123 VDEKEL 124

The following BLAST results are available for this feature:

BLAST of Lag0002629 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18217.1	1.4e-65	90.32	transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]	[more]
XP_022144527.1	9.3e-65	99.26	transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214...	[more]
XP_038899215.1	1.2e-64	98.53	transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03...	[more]
XP_008451497.1	1.0e-63	98.52	PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0...	[more]
XP_022991537.1	3.0e-63	97.06	transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_02299153...	[more]

BLAST of Lag0002629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH4	3.8e-37	65.08	Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702...	[more]
Q148M7	6.3e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ...	[more]
Q15543	6.3e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
P61216	6.3e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf...	[more]
Q5R9W6	6.3e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1...	[more]

BLAST of Lag0002629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2Q2	7.0e-66	90.32	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1CTQ0	4.5e-65	99.26	transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ...	[more]
A0A1S3BRL0	5.0e-64	98.52	transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TZC2	5.0e-64	98.52	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1JWI2	1.5e-63	97.06	transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Lag0002629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02680.1	2.7e-38	65.08	TBP-associated factor 13	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..112
IPR003195	Transcription initiation factor IID, subunit 13	PFAM	PF02269	TFIID-18kDa	coord: 117..205 e-value: 1.2E-30 score: 105.4
IPR003195	Transcription initiation factor IID, subunit 13	PANTHER	PTHR11380	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	coord: 88..220
IPR003195	Transcription initiation factor IID, subunit 13	CDD	cd07978	TAF13	coord: 115..205 e-value: 9.12162E-43 score: 137.662
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 117..161 e-value: 8.0E-22 score: 78.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 118..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002629.1	Lag0002629.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009960	endosperm development
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity