Lag0002618 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002618
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	H15 domain-containing protein
Location	chr4: 44294109 .. 44294693 (-)
RNA-Seq Expression	Lag0002618
Synteny	Lag0002618

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGCACTTCCAACTCCAACCAATAATTTCAATTCCAGTTCTGCCCATCACCCACCCTACTTCGAGGTCAAATCCCTCATAATCTAACACATCTTCATCTTCATCTCTCTGTAATTGTTTCATGGGTTTCTCTCTTTCTTCCTTTTTCAGATGATCAGCGACGCAATTTCGAGACTCAAGCACCGGAACGGATCGAGCCAAGAAGCAATTTCAAAGCTAATCGAGGAAAAGTACAAGGAATCGCTTCCACCCACTTTCAGAAAAACGCTCTCTGTTCAGATTAAGAAGTTGGTCAGAACAGAGAGGCTGATCGAAGTCAACAACTCCTTCAAGATTTCTCCTGCAGAGAAGCAGACAGAAGAGGGGGAGAAGAGGAAAGGGGGAAAAACGAAGAGGCTCAGCCAGGTCAGGACGCCGGAAGGGAAGACGCCGCCGTCTGCGGCGGCGGTGGGTGGGAAGATGAAGAAGCTGAGTCAGGTGAGGACGCCTGAAGGATTTAAGAGGAAGAGGGATTTGGATTTGGGGAAATTGTCGACTGCAAGTGGAAATGGAAAGGAACAAAAAAGGAGGAGGAAGTGA

mRNA sequence

ATGGGAAAAGCACTTCCAACTCCAACCAATAATTTCAATTCCAGTTCTGCCCATCACCCACCCTACTTCGAGATGATCAGCGACGCAATTTCGAGACTCAAGCACCGGAACGGATCGAGCCAAGAAGCAATTTCAAAGCTAATCGAGGAAAAGTACAAGGAATCGCTTCCACCCACTTTCAGAAAAACGCTCTCTGTTCAGATTAAGAAGTTGGTCAGAACAGAGAGGCTGATCGAAGTCAACAACTCCTTCAAGATTTCTCCTGCAGAGAAGCAGACAGAAGAGGGGGAGAAGAGGAAAGGGGGAAAAACGAAGAGGCTCAGCCAGGTCAGGACGCCGGAAGGGAAGACGCCGCCGTCTGCGGCGGCGGTGGGTGGGAAGATGAAGAAGCTGAGTCAGGTGAGGACGCCTGAAGGATTTAAGAGGAAGAGGGATTTGGATTTGGGGAAATTGTCGACTGCAAGTGGAAATGGAAAGGAACAAAAAAGGAGGAGGAAGTGA

Coding sequence (CDS)

ATGGGAAAAGCACTTCCAACTCCAACCAATAATTTCAATTCCAGTTCTGCCCATCACCCACCCTACTTCGAGATGATCAGCGACGCAATTTCGAGACTCAAGCACCGGAACGGATCGAGCCAAGAAGCAATTTCAAAGCTAATCGAGGAAAAGTACAAGGAATCGCTTCCACCCACTTTCAGAAAAACGCTCTCTGTTCAGATTAAGAAGTTGGTCAGAACAGAGAGGCTGATCGAAGTCAACAACTCCTTCAAGATTTCTCCTGCAGAGAAGCAGACAGAAGAGGGGGAGAAGAGGAAAGGGGGAAAAACGAAGAGGCTCAGCCAGGTCAGGACGCCGGAAGGGAAGACGCCGCCGTCTGCGGCGGCGGTGGGTGGGAAGATGAAGAAGCTGAGTCAGGTGAGGACGCCTGAAGGATTTAAGAGGAAGAGGGATTTGGATTTGGGGAAATTGTCGACTGCAAGTGGAAATGGAAAGGAACAAAAAAGGAGGAGGAAGTGA

Protein sequence

MGKALPTPTNNFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKKLVRTERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKTPPSAAAVGGKMKKLSQVRTPEGFKRKRDLDLGKLSTASGNGKEQKRRRK

Homology

[Close]

BLAST of Lag0002618 vs. NCBI nr
Match: KAF3970275.1 (hypothetical protein CMV_006013 [Castanea mollissima])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-28
Identity = 82/164 (50.00%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 11  NFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKK 70
           N  S+   HPPYFEMIS+AIS LK R GSSQ+AI+K I++KYK+ LP  F+K LSVQ+KK
Sbjct: 14  NSQSNWTLHPPYFEMISEAISTLKDRTGSSQQAIAKFIDDKYKKELPQNFKKVLSVQLKK 73

Query: 71  LVRTERLIEVNNSFKISPAEKQTEEGE-----------------KRKGGKTKRLSQVRTP 130
            V++ERL+++ NSFK++  E Q ++G+                   KG KTKRL+QV+TP
Sbjct: 74  FVKSERLVKIKNSFKLAVKETQKKKGKDNAKKAVTPKENEAKKISEKGLKTKRLNQVKTP 133

Query: 131 EGKTPPSAAAVGGKMKKLSQVRTPEGFKRKRDLDLGKLSTASGN 158
           E K    A A   KMK+LSQV+TPEG K+K++L   K  +AS N
Sbjct: 134 E-KKKKKAVAGTKKMKRLSQVKTPEGLKKKKNLTPMKRKSASKN 176

[Close]

BLAST of Lag0002618 vs. NCBI nr
Match: XP_023913227.1 (histone H1-like [Quercus suber])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 82/164 (50.00%), Postives = 108/164 (65.85%), Query Frame = 0


Query: 11  NFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKK 70
           N  S+S  HPPYFEMIS+AI  LK R GSSQ AI+K I++KYK+ LP  F+K LSVQ+KK
Sbjct: 14  NSQSNSTLHPPYFEMISEAILTLKDRTGSSQPAIAKFIDDKYKKELPQNFKKVLSVQLKK 73

Query: 71  LVRTERLIEVNNSFKISPAEKQTEEGE-----------------KRKGGKTKRLSQVRTP 130
            V++ERL+++ NSFK++  E Q ++G+                   KG KTKRL+QV+TP
Sbjct: 74  FVKSERLMKIKNSFKLAVKETQKKKGKNDAKKAVTPKENEAKKISEKGLKTKRLNQVKTP 133

Query: 131 EGKTPPSAAAVGGKMKKLSQVRTPEGFKRKRDLDLGKLSTASGN 158
           E K    A A   KMK+LSQV+TPEG K+K++L   K  +AS N
Sbjct: 134 E-KKKKKAVAGAKKMKRLSQVKTPEGLKKKKNLTPMKRKSASKN 176

[Close]

BLAST of Lag0002618 vs. NCBI nr
Match: XP_023894854.1 (histone H1-like [Quercus suber])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 82/164 (50.00%), Postives = 108/164 (65.85%), Query Frame = 0


Query: 11  NFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKK 70
           N  S+S  HPPYFEMIS+AI  LK R GSSQ AI+K I++KYK+ LP  F+K LSVQ+KK
Sbjct: 14  NSQSNSTLHPPYFEMISEAILTLKDRTGSSQPAIAKFIDDKYKKELPQNFKKVLSVQLKK 73

Query: 71  LVRTERLIEVNNSFKISPAEKQTEEGE-----------------KRKGGKTKRLSQVRTP 130
            V++ERL+++ NSFK++  E Q ++G+                   KG KTKRL+QV+TP
Sbjct: 74  FVKSERLMKIKNSFKLAVKETQKKKGKNDAKKAVTPKENEANKISEKGLKTKRLNQVKTP 133

Query: 131 EGKTPPSAAAVGGKMKKLSQVRTPEGFKRKRDLDLGKLSTASGN 158
           E K    A A   KMK+LSQV+TPEG K+K++L   K  +AS N
Sbjct: 134 E-KKKKKAVAGAKKMKRLSQVKTPEGLKKKKNLTPMKRKSASKN 176

[Close]

BLAST of Lag0002618 vs. NCBI nr
Match: XP_030947921.1 (histone H1-like [Quercus lobata])

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-27
Identity = 80/164 (48.78%), Postives = 107/164 (65.24%), Query Frame = 0


Query: 11  NFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKK 70
           N  S+S  HPPYFEMIS+AI  LK R GSSQ AI+K I++KYK+ LP  F+  LSVQ+KK
Sbjct: 14  NSQSNSTLHPPYFEMISEAILTLKDRTGSSQPAIAKFIDDKYKKELPQNFKTVLSVQLKK 73

Query: 71  LVRTERLIEVNNSFKISPAEKQTEEGE-----------------KRKGGKTKRLSQVRTP 130
            V++ERL+++ NS+K++  E Q ++G+                   KG KTKRL+QV+TP
Sbjct: 74  FVKSERLVKIKNSYKLAVKETQKKKGKNDAKKAVTPKENEAKKISEKGLKTKRLNQVKTP 133

Query: 131 EGKTPPSAAAVGGKMKKLSQVRTPEGFKRKRDLDLGKLSTASGN 158
           E K    A A   KMK+LSQV+TPEG K+K++L   K  +AS N
Sbjct: 134 E-KKKKKAVAGAKKMKRLSQVKTPEGLKKKKNLTPMKRKSASKN 176

[Close]

BLAST of Lag0002618 vs. NCBI nr
Match: KAG8477625.1 (hypothetical protein CXB51_030211 [Gossypium anomalum])

HSP 1 Score: 131.3 bits (329), Expect = 7.5e-27
Identity = 83/171 (48.54%), Postives = 104/171 (60.82%), Query Frame = 0


Query: 1   MGKALPTPTNNFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTF 60
           M KA P   +  N   A HPPY EMI +AIS LK R GSSQ AI+K +EEKY + LPP F
Sbjct: 1   MAKAKPAVAST-NEDKASHPPYLEMICEAISTLKERTGSSQPAIAKFMEEKYGKMLPPNF 60

Query: 61  RKTLSVQIKKLVRTERLIEVNNSFKISPAEK---QTEEGEKRKGG--------------- 120
           +K LSVQ+KKLV++E+L+++ NS+KIS  EK     +E ++RKG                
Sbjct: 61  KKLLSVQLKKLVKSEKLVKLKNSYKISSTEKLKLAVKETQERKGSAKNKSSNPKEKAAKK 120

Query: 121 ------KTKRLSQVRTPE----GKTPPSAAAVGGKMKKLSQVRTPEGFKRK 144
                 KTKRLSQV+TPE     K     A  G K+K+LSQV+TPEG KRK
Sbjct: 121 VSEKSVKTKRLSQVKTPEALKKAKKDAKKAVSGSKLKRLSQVKTPEGLKRK 170

[Close]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-15
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 15  SSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKKLVRT 74
           +S  H PY EM+S+AI+ LK R GSS  AI+K +E+K+K  LPP FRK L+VQ+KKLV  
Sbjct: 46  ASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAG 105

Query: 75  ERLIEVNNSFKISPAEK---QTEEGEKRKGGKTKRLSQVRTPEGKTPPSAAAV-----GG 134
            +L +V NS+K+S A K   + +   K+     K+      P+ KTP  A          
Sbjct: 106 GKLTKVKNSYKLSSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAA 165

Query: 135 KMKKLSQVRTPEGFKRK 144
           K K + + +TP   K K
Sbjct: 166 KPKAVVKPKTPAKPKAK 182

[Close]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-15
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 14  SSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKKLVR 73
           S++  HPPYFEMI DAI  LK R GSSQ AI+K IEEK K SLP  F+K L  Q+KK V 
Sbjct: 51  SATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVA 110

Query: 74  TERLIEVNNSFKIS----------PAEKQTEEGEKRKGGKTKRLSQVRT-PEGKTPPSAA 124
           +E+L++V NS+K+           PA+K+    + +   K K   + +  P  K  P+A 
Sbjct: 111 SEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAK 170

[Close]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 57/120 (47.50%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 8   PTNNFNSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQ 67
           PT    +SS  HP Y EMI DAI  LK R GSSQ AI K IEEK+K SLPPTFRK L V 
Sbjct: 53  PTKKKTTSS--HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVN 112

Query: 68  IKKLVRTERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKTPPSAAAVGGK 127
           +K+LV +E+L++V  SFKI  A  ++    K      K+ + V  P+GK   + A    K
Sbjct: 113 LKRLVASEKLVKVKASFKIPSA--RSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAK 167

[Close]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 13  NSSSAHHPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKKLV 72
           +  ++ HP +FEMISDAIS LK R GSSQ AI+K +E+K+K+ LP  FRK L   +KKLV
Sbjct: 45  SKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQ-LPSNFRKLLLFHLKKLV 104

Query: 73  RTERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKTPPSAAAVGGKMKKLS 132
            + +L++V NSFK+  A         +K         +  P+    P  A +G K K  +
Sbjct: 105 ASGKLVKVKNSFKLPSARAAPAPALAKK-------PTIPKPKVAAKPKTAKIGAKPKAKA 158

Query: 133 QV 135
           +V
Sbjct: 165 KV 158

[Close]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 56/145 (38.62%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 19  HPPYFEMISDAISRLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLSVQIKKLVRTERLI 78
           HP Y EMI DAI  LK R GSSQ AI K IEEK KE LPPTFRK L + +K+LV + +L+
Sbjct: 62  HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLV 121

Query: 79  EVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKTPPSAAAVGGKMKKLSQVRTPE 138
           +V  SFK+  A          K    K  ++   P  K P + A    K K  +  +  +
Sbjct: 122 KVKASFKLPSA--------SAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKK 181

Query: 139 GFKRKRDLDLGKLSTASGNGKEQKR 164
               K      K  TA    K   R
Sbjct: 182 TIAVKPKTAAAKKVTAKAKAKPVPR 197

The following BLAST results are available for this feature:

BLAST of Lag0002618 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3970275.1	1.4e-28	50.00	hypothetical protein CMV_006013 [Castanea mollissima]	[more]
XP_023913227.1	2.3e-28	50.00	histone H1-like [Quercus suber]	[more]
XP_023894854.1	2.3e-28	50.00	histone H1-like [Quercus suber]	[more]
XP_030947921.1	1.5e-27	48.78	histone H1-like [Quercus lobata]	[more]
KAG8477625.1	7.5e-27	48.54	hypothetical protein CXB51_030211 [Gossypium anomalum]	[more]

BLAST of Lag0002618 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23444	6.8e-15	40.15	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P37218	8.9e-15	43.80	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P26569	1.2e-14	47.50	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
Q9M5W4	1.7e-13	40.16	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P26568	1.4e-12	38.62	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 16..83 e-value: 1.4E-21 score: 87.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 19..86 e-value: 1.3E-15 score: 57.5
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 18..88 score: 25.229769
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 16..91 e-value: 6.31969E-19 score: 74.5799
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 14..101 e-value: 2.3E-20 score: 74.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..149
None	No IPR available	PANTHER	PTHR11467:SF130	HISTONE H1	coord: 11..95
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 11..95
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 16..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002618.1	Lag0002618.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding