Lag0002597 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002597
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAnkyrin repeat protein
Locationchr4: 44081783 .. 44082337 (-)
RNA-Seq ExpressionLag0002597
SyntenyLag0002597
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGACAAAAAGTTTTAAACTCTTTCCCACTGTTTTCTTAGTGTTTGTTTGGCAGTGTTGTGCGAAGGTGAATGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCGATTTTCCTTCCGTGCATTTGGATCACATGGTTTCGAGATCCCACACGTTGGTGGTAGTGTCGCATCGAGTGTAGACATGCAAAGTCATACAGAAACACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGGCAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGCCTCACTACATCCCTTGGTCTCGAAATTCACAAGAGCAAGAGCGACGTTGTTGTTTCTCATGGTCACAAAATAAGTAAGAAGAGCGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGGGCAGCGGTAGTGTTGTTTCAAATGCTGGCAAACTACAAGAAAATTTGTCTCTTCCGACGATATATTTCCCGACGGTACAAAACTGTGTCGACAGAAAGAGGAACTCTCGACACTAA

mRNA sequence

ATGACAATGACAAAAAGTTTTAAACTCTTTCCCACTGTTTTCTTAGTGTTTGTTTGGCAGTGTTGTGCGAAGGTGAATGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCGATTTTCCTTCCGTGCATTTGGATCACATGGTTTCGAGATCCCACACGTTGGTGGTAGTGTCGCATCGAGTGTAGACATGCAAAGTCATACAGAAACACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGGCAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGCCTCACTACATCCCTTGGTCTCGAAATTCACAAGAGCAAGAGCGACGTTGTTGTTTCTCATGGTCACAAAATAAGTAAGAAGAGCGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGGGCAGCGGTAGTGTTGTTTCAAATGCTGGCAAACTACAAGAAAATTTGTCTCTTCCGACGATATATTTCCCGACGGTACAAAACTGTGTCGACAGAAAGAGGAACTCTCGACACTAA

Coding sequence (CDS)

ATGACAATGACAAAAAGTTTTAAACTCTTTCCCACTGTTTTCTTAGTGTTTGTTTGGCAGTGTTGTGCGAAGGTGAATGCCACTTTCAACGATGTCACTGGTGTTGTCGATCTCGGCCTCAATCATCGATTTTCCTTCCGTGCATTTGGATCACATGGTTTCGAGATCCCACACGTTGGTGGTAGTGTCGCATCGAGTGTAGACATGCAAAGTCATACAGAAACACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGGCAATAAAGCTTTGTCTTTTGGTCTTGAAATTAAGAAGGGCCTCACTACATCCCTTGGTCTCGAAATTCACAAGAGCAAGAGCGACGTTGTTGTTTCTCATGGTCACAAAATAAGTAAGAAGAGCGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGGGCAGCGGTAGTGTTGTTTCAAATGCTGGCAAACTACAAGAAAATTTGTCTCTTCCGACGATATATTTCCCGACGGTACAAAACTGTGTCGACAGAAAGAGGAACTCTCGACACTAA

Protein sequence

MTMTKSFKLFPTVFLVFVWQCCAKVNATFNDVTGVVDLGLNHRFSFRAFGSHGFEIPHVGGSVASSVDMQSHTETPGIAPVGLETPMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSDVVVSHGHKISKKSGVNIDISNGGKVSLKGSGSVVSNAGKLQENLSLPTIYFPTVQNCVDRKRNSRH
Homology
BLAST of Lag0002597 vs. NCBI nr
Match: KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.4e-27
Identity = 77/158 (48.73%), Postives = 100/158 (63.29%), Query Frame = 0

Query: 1   MTMTKSFKLFPTVFLVFVWQ-CCAKVNATFNDVTGVVDLGLNHRFSFRAFGSHGFEIPHV 60
           M M + F LF T+ LVF W+ CCA+V ATF+D TGVV+ GLNH+FSFRAFG      P+V
Sbjct: 1   MPMARGFTLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNV 60

Query: 61  GGSVASSVDMQSHTETP-GIAPVGLETPMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSD 120
            GS+ S+V+ Q   E P GIAPVGLET ++K +K  S+ L+I K +              
Sbjct: 61  DGSITSTVEKQIRAEAPAGIAPVGLETMINKEDKVQSYDLDIIKQI----------KGGG 120

Query: 121 VVVSHGHKISKKSGVNIDISNGGKVSLKGSGSVVSNAG 157
            VVSH H+ +  SG NI  S+GGKVS+K  GSV  ++G
Sbjct: 121 AVVSHDHESNLNSGENIAFSHGGKVSVKSKGSVAGSSG 148

BLAST of Lag0002597 vs. NCBI nr
Match: KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-26
Identity = 78/166 (46.99%), Postives = 104/166 (62.65%), Query Frame = 0

Query: 1   MTMTKSFKLFPTVFLVFVWQ-CCAKVNATFNDVTGVVDLGLNHRFSFRAFGSHGFEIPHV 60
           M MT+ FKLF T+ LVF W+ CCA+V ATF D TGVV+ GLNH+FSFRAFG      P+V
Sbjct: 1   MAMTRGFKLFQTLCLVFAWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNV 60

Query: 61  GGSVASSVDMQSHTETP-GIAPVGLETPMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSD 120
            G++ S+V  Q   E P GIAPVGL+T ++K  KA S+ L+I           I + K  
Sbjct: 61  DGTITSTVKKQIRAEAPAGIAPVGLQTLINKEKKAQSYDLDI-----------IKQIKGG 120

Query: 121 VVVSHGHKISKKSGVNIDISNGGKVSLKGSGSVV-SNAGKLQENLS 164
             +S+ H+ +  +G NI  S+GGKVS+K  GSV  S+ GK+   +S
Sbjct: 121 GAISNDHESNLNNGENIAFSHGGKVSVKSKGSVAGSSGGKINGEMS 155

BLAST of Lag0002597 vs. NCBI nr
Match: KAA0048677.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = 0

Query: 6   SFKLFPTVFLVFVWQ-CCAKVNATFNDVTGVVDLGLNHRFSFRAFGSHGFEIPHVGGSVA 65
           SFKLF T+ LVF W+ CCA+V ATF+D TGVV+ GLNH+FSFRAFG      P+V GS+ 
Sbjct: 7   SFKLFQTLCLVFAWKYCCAQVGATFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSII 66

Query: 66  SSVDMQSHTETP-GIAPVGLETPMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSDVVVSH 125
           S+V  Q   E P GIAPVGLETP++K +K  S   +I           I + K    VS+
Sbjct: 67  STVKKQIRAEAPVGIAPVGLETPINKKDKVQSDNFDI-----------IKQIKGGGAVSN 126

Query: 126 GHKISKKSGVNIDISNGGKVSLKGSGSVVSNAG 157
            H+    SG NI  S  GKVS+K   SV  ++G
Sbjct: 127 DHESKLNSGENIAFSYVGKVSVKSKNSVAGSSG 148

BLAST of Lag0002597 vs. NCBI nr
Match: KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 73/134 (54.48%), Postives = 91/134 (67.91%), Query Frame = 0

Query: 27  ATFNDVTGVVDLGLNHRFSFRAFGSHGFEIPHVGGSVASSVDMQSHTETP-GIAPVGLET 86
           ATFNDVTGVV+L LNH FSFR FG      P+  GS+AS+V+  +H E P GIAPVGL+T
Sbjct: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVN--NHAEAPTGIAPVGLDT 60

Query: 87  PMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSDVVVSHGHKISKKSGVNIDISNGGKVSL 146
           P++KG+K  +FGLEI           I + +S VVVS  H+I+ KSG NI +S+GGK+SL
Sbjct: 61  PINKGDKVSTFGLEI-----------IKQIESGVVVSKDHEINLKSGGNIALSHGGKISL 120

Query: 147 KGSG--SVVSNAGK 158
           KG G  SV  N GK
Sbjct: 121 KGKGGVSVSINGGK 121

BLAST of Lag0002597 vs. NCBI nr
Match: TYK18187.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 81/217 (37.33%), Postives = 103/217 (47.47%), Query Frame = 0

Query: 1   MTMTKSFKLFPTVFLVFVWQCCAKVNATFNDVTGVVDLGLNHRFSFRAFGSHGFEI--PH 60
           M  T+ FKLF T+FL+F WQCC KV ATF+DVTG++ LG+NHR+SF AFGS G  +    
Sbjct: 1   MATTQGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHRYSFHAFGSSGVGMFSNT 60

Query: 61  VGGSVASSVDMQSHTETP-------------------------------------GIAP- 120
           VG   +S VD++S  + P                                      IAP 
Sbjct: 61  VGSRASSVVDIESPAQAPTSEIVPAGPEIDLATKNSHDFEAFISKDHDIHWKSGSSIAPH 120

Query: 121 ---------------------VGLETPMSKGNKALSFGLEIKKGLTTSLGLEIHKSKSDV 157
                                 GLET  S+ NKALSFG+EI+K    SLGL+ H  K  V
Sbjct: 121 GGVVSSGGKIGVKSNSNFAVSHGLET-SSRNNKALSFGIEIEKNNVASLGLKAHTRKVHV 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646352.16.4e-2748.73hypothetical protein Csa_015951, partial [Cucumis sativus][more]
KAA0048674.12.4e-2646.99Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro... [more]
KAA0048677.11.9e-2348.37Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat pro... [more]
KAE8646351.19.5e-2354.48hypothetical protein Csa_023818, partial [Cucumis sativus][more]
TYK18187.11.3e-1937.33Ankyrin repeat protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002597.1Lag0002597.1mRNA