Lag0002590 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002590
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ankyrin repeat protein
Location	chr4: 44033349 .. 44033816 (-)
RNA-Seq Expression	Lag0002590
Synteny	Lag0002590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCATAGTGATTGCTTGGCAATGTTGTGCGAAGGTGGGTGCAACTTTTGGCGATGTCACCGGTACCGTAAATCCCAGCCTCAATCATCCGTTTTCCTTCCGTGCCTTTGGATCTCATGGCACACAAGCACCGAGAATTGCACCGGTTGGGCTTCAAACTCCCAAGAGTAGGAGTGTAGTTATTGTTTCTCATGGTCATGAAGTTAGCACAAAGAGTAGCATCGTGTCAAATGTAGACATGCAGCGTCCCACCACAGAAGCATCGGGGATTGCCCCAGTTGGACTTGAAAATCCAATGAGTTTTAAAGGCCATAAAACTTTGTCTTTTGGTCTCGAAATTCCACAGAGCAGCGGATACCTTGATCTCAACAAAATTCCAAAAAGCAAGGGTGGCATTGCTACTTTTCCCATGGTGGAAAAATTAGCTTGA

mRNA sequence

ATGGCAATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCATAGTGATTGCTTGGCAATGTTGTGCGAAGGTGGGTGCAACTTTTGGCGATGTCACCGGTACCGTAAATCCCAGCCTCAATCATCCGTTTTCCTTCCGTGCCTTTGGATCTCATGGCACACAAGCACCGAGAATTGCACCGGTTGGGCTTCAAACTCCCAAGAGTAGGAGTGTAGTTATTGTTTCTCATGGTCATGAAGTTAGCACAAAGAGTAGCATCGTGTCAAATGTAGACATGCAGCGTCCCACCACAGAAGCATCGGGGATTGCCCCAGTTGGACTTGAAAATCCAATGAGTTTTAAAGGCCATAAAACTTTGTCTTTTGGTCTCGAAATTCCACAGAGCAGCGGATACCTTGATCTCAACAAAATTCCAAAAAGCAAGGGTGGCATTGCTACTTTTCCCATGGTGGAAAAATTAGCTTGA

Coding sequence (CDS)

ATGGCAATGGCGAAAGGTTTCAAGCTCTTTCACACCCTTTTCATAGTGATTGCTTGGCAATGTTGTGCGAAGGTGGGTGCAACTTTTGGCGATGTCACCGGTACCGTAAATCCCAGCCTCAATCATCCGTTTTCCTTCCGTGCCTTTGGATCTCATGGCACACAAGCACCGAGAATTGCACCGGTTGGGCTTCAAACTCCCAAGAGTAGGAGTGTAGTTATTGTTTCTCATGGTCATGAAGTTAGCACAAAGAGTAGCATCGTGTCAAATGTAGACATGCAGCGTCCCACCACAGAAGCATCGGGGATTGCCCCAGTTGGACTTGAAAATCCAATGAGTTTTAAAGGCCATAAAACTTTGTCTTTTGGTCTCGAAATTCCACAGAGCAGCGGATACCTTGATCTCAACAAAATTCCAAAAAGCAAGGGTGGCATTGCTACTTTTCCCATGGTGGAAAAATTAGCTTGA

Protein sequence

MAMAKGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRIAPVGLQTPKSRSVVIVSHGHEVSTKSSIVSNVDMQRPTTEASGIAPVGLENPMSFKGHKTLSFGLEIPQSSGYLDLNKIPKSKGGIATFPMVEKLA

Homology

[Close]

BLAST of Lag0002590 vs. NCBI nr
Match: KAA0048667.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 5   KGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRIAPVGL 64
           KGFKLFHTLF+V+ WQCC KVGATFGD TG+V P++++ F FRAFGSHG QAP +APV  
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSS 63

Query: 65  QTPKSRSVVIVSHGHEVSTKSSIVSNVDMQRPTTEASG 103
              K   +++VSHGHE ST     S V      T A+G
Sbjct: 64  VGGK---ILVVSHGHETSTAKGAGSVVVSHGKKTGANG 98

[Close]

BLAST of Lag0002590 vs. NCBI nr
Match: KGN44963.1 (hypothetical protein Csa_016517 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MAMA-KGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRI 60
           M MA  GFKLFHTLF+V+AWQCC KVGATFGDVTG+V P+L+     RAFGSHGTQA  +
Sbjct: 1   MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV 60

Query: 61  APVGLQTPKSRSVVIVSHGHEVSTKSS----IVSNVDMQRPTTEASGIAPVGLENPMSFK 116
           APV     K   V++VS GHE+ST  S    +VS+     P      +  +   + +S K
Sbjct: 61  APVSSVGGK---VLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKK 117

[Close]

BLAST of Lag0002590 vs. NCBI nr
Match: KAA0048668.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 5   KGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRIAPVGL 64
           KGFKLFHTLF+V+ WQCC KV ATFGD TG+V P+++  F FRAFGSHGT  P +APV  
Sbjct: 4   KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63

Query: 65  QTPKSRSVVIVSHGHEVSTKSSIVSNVDMQRPTTEASG 103
              K   +++VSHGHE ST     S V      T A+G
Sbjct: 64  VGGK---ILVVSHGHETSTAKGAGSVVISHGKKTGANG 98

[Close]

BLAST of Lag0002590 vs. NCBI nr
Match: XP_022975301.1 (uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-18
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 1   MAMAKGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRIA 60
           M M  GFKLFHT+F+VI WQ CAKVGATFGD TG +N  L+H FSFRAFGSH TQAP +A
Sbjct: 1   MVMGNGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVA 60

Query: 61  PVG--LQTPKSRSVVIVSHGHEV-STKSSIVSNVDMQRPTTEASGIAPVG 108
           P+G    TP+  SV  ++   EV S +S+ ++    +  +T+ + I P+G
Sbjct: 61  PIGSIALTPEVASVESIALTPEVASVESTALTPKAARVGSTQTTTITPIG 108

[Close]

BLAST of Lag0002590 vs. NCBI nr
Match: XP_022925509.1 (uncharacterized protein LOC111432788 [Cucurbita moschata] >XP_022930128.1 uncharacterized protein LOC111436642 [Cucurbita moschata] >XP_022930129.1 uncharacterized protein LOC111436644 [Cucurbita moschata] >XP_022930186.1 uncharacterized protein LOC111436685 [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-18
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MAMAKGFKLFHTLFIVIAWQCCAKVGATFGDVTGTVNPSLNHPFSFRAFGSHGTQAPRIA 60
          MAM KGFKLFH+LF+VI WQCCAKV ATFGDV G VN  L+H FSFRAFGS  TQAP +A
Sbjct: 1  MAMGKGFKLFHSLFLVIVWQCCAKVDATFGDVNGVVN--LDHQFSFRAFGSQDTQAPTVA 60

Query: 61 PVGLQT 67
          P+G  T
Sbjct: 61 PIGSST 64

The following BLAST results are available for this feature:

BLAST of Lag0002590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048667.1	1.5e-21	57.14	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18165.1 Ankyrin repeat pro...	[more]
KGN44963.1	3.7e-20	50.00	hypothetical protein Csa_016517 [Cucumis sativus]	[more]
KAA0048668.1	3.7e-20	55.10	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat pro...	[more]
XP_022975301.1	1.6e-18	51.82	uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima]	[more]
XP_022925509.1	4.5e-18	72.73	uncharacterized protein LOC111432788 [Cucurbita moschata] >XP_022930128.1 unchar...	[more]

BLAST of Lag0002590 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002590.1	Lag0002590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0042558	pteridine-containing compound metabolic process
molecular_function	GO:0016301	kinase activity