Lag0002576 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002576
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 43921194 .. 43921598 (+)
RNA-Seq Expression	Lag0002576
Synteny	Lag0002576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTTCGACGAAAATCAAACTCTGATGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGATTATTATTTATGAAGAAGAGTACCCAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAAAGCTTGAAAGTTCTAGGGAGTTATTCCTTTGGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATATATCATCTTCGAAATCATGTTCATCTTCATCCCTCGTTGTCAGAAGAAACTTCTTTTCAAGGAGTTCTTTTCGAGAAGATCAAGGGGATGAAAAAATCATCGATATAATTATATATATTGACAATGATTATGAGAATGGACAGAATAAAGAGACTCGAATGGTTTGA

mRNA sequence

ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTTCGACGAAAATCAAACTCTGATGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGATTATTATTTATGAAGAAGAGTACCCAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAAAGCTTGAAAGTTCTAGGGAGTTATTCCTTTGGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATATATCATCTTCGAAATCATGTTCATCTTCATCCCTCGTTGTCAGAAGAAACTTCTTTTCAAGGAGTTCTTTTCGAGAAGATCAAGGGGATGAAAAAATCATCGATATAATTATATATATTGACAATGATTATGAGAATGGACAGAATAAAGAGACTCGAATGGTTTGA

Coding sequence (CDS)

ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTTCGACGAAAATCAAACTCTGATGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGATTATTATTTATGAAGAAGAGTACCCAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAAAGCTTGAAAGTTCTAGGGAGTTATTCCTTTGGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATATATCATCTTCGAAATCATGTTCATCTTCATCCCTCGTTGTCAGAAGAAACTTCTTTTCAAGGAGTTCTTTTCGAGAAGATCAAGGGGATGAAAAAATCATCGATATAATTATATATATTGACAATGATTATGAGAATGGACAGAATAAAGAGACTCGAATGGTTTGA

Protein sequence

MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIYEEEYPKSIESEAKIYDQSLKVLGSYSFGEFDEVTWLEELTDISSSKSCSSSSLVVRRNFFSRSSFREDQGDEKIIDIIIYIDNDYENGQNKETRMV

Homology

[Close]

BLAST of Lag0002576 vs. NCBI nr
Match: XP_038899634.1 (uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 9.7e-17
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIYEE-EYPKS---IESEAKIYDQS 60
           M VKY SIEDS  +EN+ LMT+   E   +EN V++IYEE EYP S   IE+E + Y++S
Sbjct: 110 MSVKYTSIEDSK-EENRPLMTEHILEKKKEENIVVVIYEEGEYPNSEEFIENEIQKYEES 169

Query: 61  LKVLGSYSFGEFDEVTWLEELT-DISSSKSCSSSSLVVRRNFFSRSSF-REDQGDEKIID 120
            KV  S+   EFD+ TWLEE T   S+S S SSSS       FS   F +E  GD+K +D
Sbjct: 170 SKVTKSFPSAEFDD-TWLEEWTYRPSTSSSSSSSSSSSEETSFSIGVFSQEIDGDDKSMD 229

Query: 121 IIIYIDNDYENGQNKETRMV 135
           I+IYID+D ENG++++ + V
Sbjct: 230 IVIYIDDDNENGEDEQFQRV 247

[Close]

BLAST of Lag0002576 vs. NCBI nr
Match: KAG6575810.1 (hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-09
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1   MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIYEEEYPKSIESEAKIYDQSLKVL 60
           MLVKY+ +EDS FDE QTL TK   E ND+EN V+  YEEE  +  +SE  + ++   V 
Sbjct: 104 MLVKYSPLEDSVFDETQTLTTKSIPEKNDEENVVVNNYEEE--EYTDSEKSVENE---VG 163

Query: 61  GSYSFGEFDEVTWLEELTDISSSKSCSSS 90
            S+S  EFDE TWL   TD SSS S SSS
Sbjct: 164 ESFSSEEFDEATWLIGWTDKSSSSSSSSS 187

[Close]

BLAST of Lag0002576 vs. NCBI nr
Match: KAG7014352.1 (hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 7.4e-09
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 1   MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIYEEEYPKSIESEAKIYDQSLKVL 60
           MLVKY+S +DS FDE QTL TK   E ND+EN V+  YEEE  +  +SE  + ++   V 
Sbjct: 183 MLVKYSSSKDSVFDETQTLTTKSIPEKNDEENVVVNNYEEE--EYTDSEKSVENE---VA 242

Query: 61  GSYSFGEFDEVTWLEELTDISSSKSCSSSS 91
            S+S  EFDE TWL   TD SSS S +SSS
Sbjct: 243 ESFSSEEFDEATWLIGWTDKSSSYSLTSSS 267

[Close]

BLAST of Lag0002576 vs. NCBI nr
Match: XP_022991241.1 (uncharacterized protein LOC111487956 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1   MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIYEEEYPKSIESEAKIYDQSLKVL 60
           MLVKY+ +EDS  DE QTL TK   E ND+EN V+  YEEE  +  +SE  + +    V 
Sbjct: 101 MLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVVNNYEEE--EYTDSEKSVEN---GVA 160

Query: 61  GSYSFGEFDEVTWLEELTDISSSKSCSSSS 91
            S+S  EFDE TWL   TD SSS S +SSS
Sbjct: 161 ESFSSEEFDEATWLIGWTDKSSSYSLTSSS 185

[Close]

BLAST of Lag0002576 vs. NCBI nr
Match: XP_023548989.1 (uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08
Identity = 49/94 (52.13%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1   MLVKYASIEDSNFDENQTLMTKPFSETNDDENTVIIIY-EEEYP---KSIESEAKIYDQS 60
           +LVKY+  EDS FDE QT+ TK   E ND+EN V+  Y EEEYP   KS+E+E       
Sbjct: 103 ILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENE------- 162

Query: 61  LKVLGSYSFGEFDEVTWLEELTDISSSKSCSSSS 91
             V  S S  EFDE TWL   TD SSS S +SSS
Sbjct: 163 --VAESVSSEEFDEATWLIGWTDKSSSYSLTSSS 187

The following BLAST results are available for this feature:

BLAST of Lag0002576 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899634.1	9.7e-17	48.57	uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida]	[more]
KAG6575810.1	4.4e-09	52.81	hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014352.1	7.4e-09	52.22	hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022991241.1	8.2e-08	51.11	uncharacterized protein LOC111487956 [Cucurbita maxima]	[more]
XP_023548989.1	8.2e-08	52.13	uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002576 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002576.1	Lag0002576.1	mRNA