Lag0002574 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002574
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	exopolygalacturonase-like
Location	chr4: 43914204 .. 43915238 (+)
RNA-Seq Expression	Lag0002574
Synteny	Lag0002574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACGTCAAGAAGTTTTAGCCTCTTCCAAATCCTTCTCTTGGTATTTGTTTGGCAATGTTGTGCAATGGTGGCTGCCATTTTCAACAACGACCTCGGTATTGTGAATCTCGTCGGCGGGATTGCATTGACGGTAAATCAGCAACTTCCTACAGCCCCTCCACAGGCTCTTGGTATCGGAACTCTGACAGGCAGTGACGGTAGTGTTGCAGTAAATGACGTTAAGGCCACTATTGATCTGAATGGGAAGGGTGGTGCAGTTTTTGATGTTAGAAAGTATGAAGCTAAAACTGATGGAAAGACTGATAATGCACCGGCGATGATAATTAACCTCAATGAAATCACAGATTTTAAACTTTTAATTTCAATAATTATCTTTGAACTTTTTTTTTTTTTGAAAAAAATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGATATTTACAAATGATCCATATTACCCTATGCCACTTTTTTCTCAGTGATGAAGAACTTAACTTGATGTGTTGTAGCTAATCCAAAGGTTGAAAATAGTGGATAACTTGCACTACTAAGAAACAAAAGATTTCCAAGTTCAGAAGTAGAAATGAGAAGAAGATTCACTAGATAACAAACTACATTGAGCAATATGCTATTTATGTATCAGGTAGTTTTGGCTCAAGTGTCCCAATCCTGTAGTGAAGCTATAATATATGACCTAAGCTTGAAAGTTCCAGGGAGTTATTCCTTCAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAACATCATCATCTTCGTCTTCGTCGTCATCCTCATCGTCAGAAGAAATTTCTTCTCATGGAGTTGTTTTGGAGAAGATCAAGGGAGATGAAAAACTCATTGATATAGTTATATATATTGACGATAATGATGATGAGAATGGAGAGAACGAAGAGAGTCATATTGTTTGA

mRNA sequence

ATGACAACGTCAAGAAGTTTTAGCCTCTTCCAAATCCTTCTCTTGGTATTTGTTTGGCAATGTTGTGCAATGGTGGCTGCCATTTTCAACAACGACCTCGGTATTGTGAATCTCGTCGGCGGGATTGCATTGACGGTAAATCAGCAACTTCCTACAGCCCCTCCACAGGCTCTTGGTATCGGAACTCTGACAGGCAGTGACGGTAGTGTTGCAGTAAATGACGTTAAGGCCACTATTGATCTGAATGGGAAGGGTGGTGCAGTTTTTGATGTAGTTTTGGCTCAAGTGTCCCAATCCTGTAGTGAAGCTATAATATATGACCTAAGCTTGAAAGTTCCAGGGAGTTATTCCTTCAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAACATCATCATCTTCGTCTTCGTCGTCATCCTCATCGTCAGAAGAAATTTCTTCTCATGGAGTTGTTTTGGAGAAGATCAAGGGAGATGAAAAACTCATTGATATAGTTATATATATTGACGATAATGATGATGAGAATGGAGAGAACGAAGAGAGTCATATTGTTTGA

Coding sequence (CDS)

ATGACAACGTCAAGAAGTTTTAGCCTCTTCCAAATCCTTCTCTTGGTATTTGTTTGGCAATGTTGTGCAATGGTGGCTGCCATTTTCAACAACGACCTCGGTATTGTGAATCTCGTCGGCGGGATTGCATTGACGGTAAATCAGCAACTTCCTACAGCCCCTCCACAGGCTCTTGGTATCGGAACTCTGACAGGCAGTGACGGTAGTGTTGCAGTAAATGACGTTAAGGCCACTATTGATCTGAATGGGAAGGGTGGTGCAGTTTTTGATGTAGTTTTGGCTCAAGTGTCCCAATCCTGTAGTGAAGCTATAATATATGACCTAAGCTTGAAAGTTCCAGGGAGTTATTCCTTCAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAACATCATCATCTTCGTCTTCGTCGTCATCCTCATCGTCAGAAGAAATTTCTTCTCATGGAGTTGTTTTGGAGAAGATCAAGGGAGATGAAAAACTCATTGATATAGTTATATATATTGACGATAATGATGATGAGAATGGAGAGAACGAAGAGAGTCATATTGTTTGA

Protein sequence

MTTSRSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQLPTAPPQALGIGTLTGSDGSVAVNDVKATIDLNGKGGAVFDVVLAQVSQSCSEAIIYDLSLKVPGSYSFREFDEVTWLEELTDKSSSTSSSSSSSSSSSSEEISSHGVVLEKIKGDEKLIDIVIYIDDNDDENGENEESHIV

Homology

[Close]

BLAST of Lag0002574 vs. NCBI nr
Match: XP_038896336.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 56/91 (61.54%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 3  TSRSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQL--PTAPPQALGI 62
          T  S SLFQILLL F WQCCA VAAIF++  G  NLV G+  TVNQ L  P A P  LGI
Sbjct: 2  TMTSPSLFQILLLAFAWQCCAEVAAIFDDITGTANLVNGVVSTVNQPLLHPAAAPLPLGI 61

Query: 63 GTLTGSDGSVAVNDVKATIDLNGKGGAVFDV 92
          GTL    G+  VND+KA +DLNG GG+VFDV
Sbjct: 62 GTLPDLGGT--VNDIKANVDLNGNGGSVFDV 90

[Close]

BLAST of Lag0002574 vs. NCBI nr
Match: XP_038896337.1 (exopolygalacturonase clone GBGE184-like [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-16
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 5  RSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQL--PTAPPQALGIGT 64
          +S SLFQILLLV  WQCCA VAAI ++  G  NLV GI   VNQ+L  P A P++LGIGT
Sbjct: 3  KSLSLFQILLLVLAWQCCAKVAAILDDATGASNLVDGIVSMVNQKLLHPAAAPRSLGIGT 62

Query: 65 LTGSDGSVAVNDVKATIDLNGKGGAVFDV 92
          L    G+  VND+KA  DLNG GGAVFDV
Sbjct: 63 LPDIGGT--VNDIKANADLNGNGGAVFDV 89

[Close]

BLAST of Lag0002574 vs. NCBI nr
Match: KAG7014351.1 (Exopolygalacturonase-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-14
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MTTSRSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQ-LPTAPPQALG 60
          MTT+ + SLFQ LLLV   QCCA VAA+F++     N + GI  T NQQ  P APP  LG
Sbjct: 1  MTTTTNLSLFQTLLLVLACQCCAEVAAVFDHVKVAANPIDGIVSTANQQHRPPAPPLPLG 60

Query: 61 IGTLTGSDGSVAVNDVKATIDL--NGKGGAVFDV 92
          IGTL  S G VA+N  KA +DL  NG G AVFDV
Sbjct: 61 IGTLANSRGRVAINSTKAAVDLKGNGNGNAVFDV 94

[Close]

BLAST of Lag0002574 vs. NCBI nr
Match: KAG6575809.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-14
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MTTSRSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQ-LPTAPPQALG 60
          MTT+ + SLFQ LLLV   QCCA VAA+F++     N + GI  T NQQ  P APP  LG
Sbjct: 1  MTTTTNLSLFQTLLLVLACQCCAEVAAVFDHVKVAANPIDGIVSTANQQHRPPAPPLPLG 60

Query: 61 IGTLTGSDGSVAVNDVKATIDL--NGKGGAVFDV 92
          IGTL  S G VA+N  KA +DL  NG G AVFDV
Sbjct: 61 IGTLANSRGRVAINSTKAAVDLKGNGNGNAVFDV 94

[Close]

BLAST of Lag0002574 vs. NCBI nr
Match: XP_022953910.1 (exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MTTSRSFSLFQILLLVFVWQCCAMVAAIFNNDLGIVNLVGGIALTVNQQ-LPTAPPQALG 60
          MTT+ + SLFQ LLLV   QCCA VAA+F++     N + GI  T +QQ  P APP  LG
Sbjct: 1  MTTTTNLSLFQTLLLVLACQCCAEVAAVFDHVKVAANPINGIVSTTSQQHRPPAPPLPLG 60

Query: 61 IGTLTGSDGSVAVNDVKATIDL--NGKGGAVFDV 92
          IGTL  S G VA+N  KA +DL  NG G AVFDV
Sbjct: 61 IGTLANSHGRVAINSTKAAVDLKGNGNGNAVFDV 94

The following BLAST results are available for this feature:

BLAST of Lag0002574 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896336.1	1.4e-16	61.54	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_038896337.1	6.8e-16	61.80	exopolygalacturonase clone GBGE184-like [Benincasa hispida]	[more]
KAG7014351.1	6.4e-14	56.38	Exopolygalacturonase-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6575809.1	6.4e-14	56.38	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953910.1	1.4e-13	55.32	exopolygalacturonase-like [Cucurbita moschata]	[more]

BLAST of Lag0002574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002574.1	Lag0002574.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0051536	iron-sulfur cluster binding