Lag0002566 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002566
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr4: 43876501 .. 43876977 (-)
RNA-Seq Expression	Lag0002566
Synteny	Lag0002566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTCTCTAAGCTTATGGCTTCTTTTATTTTCCTTGCTTTCATCTCATTCTCAATCTCTCTCGTCTCTGCTCAAAAAGCTCTTTCCGCCTACGATATTCTCCAACAGTACGGTTTTCCCGTCGGCATTCTTCCCGTCGGAGTCACCGGCTACGAATTGAACAGAGCTACCGGAGAATTCAGTCTCTTTTTGAATCAGAAGTGCAAATTCTCGATCGATTCCTACGAATTGGAGTACAAACCTACCATCAAGGGCGTGATTTCCGAAGGCAGACTCAGGAAATTGAAAGGCGTTAGTGTTAAGGTCTTCTTGGTGTGGCTCAGCATCGTTGAAGTCGTGAACGATGGTGACGACCTTCAATTCTCTGTCGGAATTGCTTATGCCAATTTTCCGATTGATAGTTTCTATGAGTCGCCGCAGTGTGGATGTGGATTTGACTGCAATAAGGCTGAGAGCTTGGTTTCGGCTTCTTGA

mRNA sequence

ATGAGCTTCTCTAAGCTTATGGCTTCTTTTATTTTCCTTGCTTTCATCTCATTCTCAATCTCTCTCGTCTCTGCTCAAAAAGCTCTTTCCGCCTACGATATTCTCCAACAGTACGGTTTTCCCGTCGGCATTCTTCCCGTCGGAGTCACCGGCTACGAATTGAACAGAGCTACCGGAGAATTCAGTCTCTTTTTGAATCAGAAGTGCAAATTCTCGATCGATTCCTACGAATTGGAGTACAAACCTACCATCAAGGGCGTGATTTCCGAAGGCAGACTCAGGAAATTGAAAGGCGTTAGTGTTAAGGTCTTCTTGGTGTGGCTCAGCATCGTTGAAGTCGTGAACGATGGTGACGACCTTCAATTCTCTGTCGGAATTGCTTATGCCAATTTTCCGATTGATAGTTTCTATGAGTCGCCGCAGTGTGGATGTGGATTTGACTGCAATAAGGCTGAGAGCTTGGTTTCGGCTTCTTGA

Coding sequence (CDS)

ATGAGCTTCTCTAAGCTTATGGCTTCTTTTATTTTCCTTGCTTTCATCTCATTCTCAATCTCTCTCGTCTCTGCTCAAAAAGCTCTTTCCGCCTACGATATTCTCCAACAGTACGGTTTTCCCGTCGGCATTCTTCCCGTCGGAGTCACCGGCTACGAATTGAACAGAGCTACCGGAGAATTCAGTCTCTTTTTGAATCAGAAGTGCAAATTCTCGATCGATTCCTACGAATTGGAGTACAAACCTACCATCAAGGGCGTGATTTCCGAAGGCAGACTCAGGAAATTGAAAGGCGTTAGTGTTAAGGTCTTCTTGGTGTGGCTCAGCATCGTTGAAGTCGTGAACGATGGTGACGACCTTCAATTCTCTGTCGGAATTGCTTATGCCAATTTTCCGATTGATAGTTTCTATGAGTCGCCGCAGTGTGGATGTGGATTTGACTGCAATAAGGCTGAGAGCTTGGTTTCGGCTTCTTGA

Protein sequence

MSFSKLMASFIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRATGEFSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDGDDLQFSVGIAYANFPIDSFYESPQCGCGFDCNKAESLVSAS

Homology

[Close]

BLAST of Lag0002566 vs. NCBI nr
Match: XP_022991260.1 (uncharacterized protein At5g01610-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 132/158 (83.54%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MSFSKLMASFIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRATGE 60
           MSFSKLMAS +FLAF+SFS  LVSAQKAL+AYDI+QQYGFPVGILP+GVTGYEL+R TG 
Sbjct: 1   MSFSKLMASLLFLAFVSFSSPLVSAQKALTAYDIIQQYGFPVGILPLGVTGYELDRDTGS 60

Query: 61  FSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDGDDL 120
           FSLFL+QKCKF+IDSYELEYKPTI GVIS+GRL KLKGVSVK+ ++WLSIVEVV+DGD+L
Sbjct: 61  FSLFLDQKCKFTIDSYELEYKPTITGVISQGRLSKLKGVSVKILILWLSIVEVVSDGDEL 120

Query: 121 QFSVGIAYANFPIDSFYESPQCGCGFDCNKAESLVSAS 159
            FSVGIA ANFPIDSFYESPQCGCGFDCNK  SLVSAS
Sbjct: 121 GFSVGIASANFPIDSFYESPQCGCGFDCNKVGSLVSAS 158

[Close]

BLAST of Lag0002566 vs. NCBI nr
Match: XP_038898643.1 (uncharacterized protein LOC120086187 [Benincasa hispida])

HSP 1 Score: 264.6 bits (675), Expect = 5.4e-67
Identity = 133/161 (82.61%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MSFSKLMAS---FIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRA 60
           M+FSKLMAS    + LAF+SFS  LVSAQK L+AYDILQQYGFPVGILPVGV GYELNRA
Sbjct: 1   MNFSKLMASLPLLLLLAFVSFSSPLVSAQKTLTAYDILQQYGFPVGILPVGVNGYELNRA 60

Query: 61  TGEFSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDG 120
           TGEFSLFLNQKCKF I+SYELEYK T++GVIS+GR+RKLKGVSVK+ L+WLSIVEVVNDG
Sbjct: 61  TGEFSLFLNQKCKFKIESYELEYKSTVQGVISQGRIRKLKGVSVKIVLLWLSIVEVVNDG 120

Query: 121 DDLQFSVGIAYANFPIDSFYESPQCGCGFDCNKAESLVSAS 159
           DDLQFSVGIA ANFP+DSFYESP+CGCGFDC+KA SLVSAS
Sbjct: 121 DDLQFSVGIASANFPLDSFYESPRCGCGFDCDKAGSLVSAS 161

[Close]

BLAST of Lag0002566 vs. NCBI nr
Match: XP_022953728.1 (uncharacterized protein LOC111456173 [Cucurbita moschata])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 129/158 (81.65%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MSFSKLMASFIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRATGE 60
           MSFSKLMAS +FLAF+SFS  LVSAQKAL+AYDI+QQYGFPVGILP+GVTGY+L+R TG 
Sbjct: 1   MSFSKLMASLLFLAFVSFSSPLVSAQKALTAYDIIQQYGFPVGILPLGVTGYKLDRDTGS 60

Query: 61  FSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDGDDL 120
           FSLFL+QKCKF+IDSYELEYKPT+ GVIS+G+L KLKGVSVK+ ++WLSIVEVV+DGD+L
Sbjct: 61  FSLFLDQKCKFAIDSYELEYKPTVTGVISQGKLSKLKGVSVKILILWLSIVEVVSDGDEL 120

Query: 121 QFSVGIAYANFPIDSFYESPQCGCGFDCNKAESLVSAS 159
            FSVGIA ANFPIDSFYESPQCGCGFDCNK  SLVSAS
Sbjct: 121 GFSVGIASANFPIDSFYESPQCGCGFDCNKVGSLVSAS 158

[Close]

BLAST of Lag0002566 vs. NCBI nr
Match: XP_023549402.1 (uncharacterized protein LOC111807766 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.6e-66
Identity = 128/158 (81.01%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MSFSKLMASFIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRATGE 60
           MSFSKLMAS +FLAF+SFS  LVSAQKAL+AYDI+QQYGFPVGILP+GVTGY+L+R TG 
Sbjct: 52  MSFSKLMASLLFLAFVSFSSPLVSAQKALTAYDIIQQYGFPVGILPLGVTGYKLDRDTGS 111

Query: 61  FSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDGDDL 120
           FSLFL+QKCKF+IDSYELEYKPT+ GVIS+G+L KLKGVSVK+ ++W SIVEVV+DGD+L
Sbjct: 112 FSLFLDQKCKFAIDSYELEYKPTVTGVISQGKLSKLKGVSVKILILWFSIVEVVSDGDEL 171

Query: 121 QFSVGIAYANFPIDSFYESPQCGCGFDCNKAESLVSAS 159
            FSVGIA ANFPIDSFYESPQCGCGFDCNK  SLVSAS
Sbjct: 172 GFSVGIASANFPIDSFYESPQCGCGFDCNKVGSLVSAS 209

[Close]

BLAST of Lag0002566 vs. NCBI nr
Match: XP_004136020.3 (uncharacterized protein LOC101206914 [Cucumis sativus] >KGN45500.2 hypothetical protein Csa_016049 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 6.6e-65
Identity = 130/159 (81.76%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MSFSKLMASFIFLAFISFSISLVSAQKALSAYDILQQYGFPVGILPVGVTGYELNRATGE 60
           MSFSKLMAS + LA IS S SLVS  +AL+AYDILQQYGFPVGILP+G TGY+LNRATGE
Sbjct: 1   MSFSKLMASLLLLASISLSTSLVSDPEALTAYDILQQYGFPVGILPIGATGYQLNRATGE 60

Query: 61  FSLFLNQKCKFSIDSYELEYKPTIKGVISEGRLRKLKGVSVKVFLVWLSIVEVVNDGDDL 120
           FSL+L+QKCKF IDSYELEYK T++GVIS+GR+RKLKGVSVK+FL+WLSIVEVVNDGDDL
Sbjct: 61  FSLYLSQKCKFKIDSYELEYKSTLQGVISKGRIRKLKGVSVKIFLLWLSIVEVVNDGDDL 120

Query: 121 QFSVGIAYANFPIDSFYESPQCGCGFDC-NKAESLVSAS 159
           QFSVGIA ANFP+DSFYESP+CGCGFDC N A SLVSAS
Sbjct: 121 QFSVGIASANFPLDSFYESPRCGCGFDCDNGAGSLVSAS 159

The following BLAST results are available for this feature:

BLAST of Lag0002566 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991260.1	1.9e-67	83.54	uncharacterized protein At5g01610-like [Cucurbita maxima]	[more]
XP_038898643.1	5.4e-67	82.61	uncharacterized protein LOC120086187 [Benincasa hispida]	[more]
XP_022953728.1	1.6e-66	81.65	uncharacterized protein LOC111456173 [Cucurbita moschata]	[more]
XP_023549402.1	4.6e-66	81.01	uncharacterized protein LOC111807766 [Cucurbita pepo subsp. pepo]	[more]
XP_004136020.3	6.6e-65	81.76	uncharacterized protein LOC101206914 [Cucumis sativus] >KGN45500.2 hypothetical ...	[more]

BLAST of Lag0002566 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 17..142 e-value: 8.6E-35 score: 121.4
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 6..148
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 31..136 e-value: 4.5E-35 score: 120.5
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 10..153
None	No IPR available	PANTHER	PTHR31676:SF76	T14P8.17	coord: 10..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002566.1	Lag0002566.1	mRNA