Lag0002559 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002559
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L22-2
Location	chr4: 43820473 .. 43821637 (+)
RNA-Seq Expression	Lag0002559
Synteny	Lag0002559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGAGTGAGCTTCGTCATCGATTGTGCGAAGCCTGTCGAGGACAAGATCATGGATATCGCCTCTTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAACTGGGGCACTAGGTGACTCCGTTACCGTCACTCGGGAAAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAGAGGTACCCATCGTTTTGTGGTTGTTAATTATAGTATTATTCTGGATTTGTGATGAGAATACGGTTCTGGATGTGTACTATTCGTGTATCTTTTTTTAACTAGAGAACAAGCGTTGAATTGCTCCGCTAGCAGCAGCGATATCAGTGAGAAAACAGGCGCTGTGCGGGTTGATATTTGTTGTGTTTTTTTTTTTTTTTGCAATTATATTGGGTCGTGAGTTTGATGAACATTAGTGAGCTATCGAAGGAATTGCTTTTGAGATTTGATTCATGATTTAGTGCAAGGAGAATGTGACTTCTTTAACAAATACTCGTTATTCTGTAATAATTCTTCCTCTTCGTGCTGTTGATTCTGAATTTGTGATTTTGACTTTTGAGTGCATTTTGATTTCTGGGTCATTTTTATTTGCTCGTTTGTGAAGTTCTTAAATCTGTAGGGTTTGGGTATAGTTTTTCTGTGTTGTGGGGTGCATTAACACTAGGTCTTTATCTGTGCAATTTTCTTTAGAATACACCTCTGATCTAATGAAAGATGTCTCACTAAAGGCTGTTACTTGTCTGCTTACGGAGTGTCTAATTAGCCACCTCTTGGTGTTGTAACCCTGCAAGTATCTGGTCTCCTTTCTTCTCCACTTCCTTTTTATGGCTGATCTTTAAATGTATTATATGTATAAATTTTGGAAGAAAGAAGTTGATCGTTACACTTCAGTTCTGATTGGTTTCATTGGAGAATAAGCCTGTAAACTCCTAATAAACTTTGCTGATTGTTTTCTCTTTTGAATCCCAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCAAACAAAGACCGCAACGTCTATGAATTGAGATACTTTAACATTGCTGAGAACGAGGGTGAGGAAGAAGATTGA

mRNA sequence

ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGAGTGAGCTTCGTCATCGATTGTGCGAAGCCTGTCGAGGACAAGATCATGGATATCGCCTCTTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAACTGGGGCACTAGGTGACTCCGTTACCGTCACTCGGGAAAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCAAACAAAGACCGCAACGTCTATGAATTGAGATACTTTAACATTGCTGAGAACGAGGGTGAGGAAGAAGATTGA

Coding sequence (CDS)

ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGAGTGAGCTTCGTCATCGATTGTGCGAAGCCTGTCGAGGACAAGATCATGGATATCGCCTCTTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAACTGGGGCACTAGGTGACTCCGTTACCGTCACTCGGGAAAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCAAACAAAGACCGCAACGTCTATGAATTGAGATACTTTAACATTGCTGAGAACGAGGGTGAGGAAGAAGATTGA

Protein sequence

MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVTVTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED

Homology

[Close]

BLAST of Lag0002559 vs. NCBI nr
Match: XP_004136027.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >XP_022155135.1 60S ribosomal protein L22-2 [Momordica charantia] >XP_038896853.1 60S ribosomal protein L22-2-like [Benincasa hispida] >KAA0067992.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa] >KGN44943.1 hypothetical protein Csa_015937 [Cucumis sativus] >TYK18135.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 8.7e-60
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRGAAASGGPKGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of Lag0002559 vs. NCBI nr
Match: XP_023548993.1 (60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.2 bits (609), Expect = 1.9e-59
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRGAAASGGPKGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of Lag0002559 vs. NCBI nr
Match: XP_022991268.1 (60S ribosomal protein L22-2-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 4.3e-59
Identity = 121/126 (96.03%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRGAAASGGPKGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYEL+YFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELKYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of Lag0002559 vs. NCBI nr
Match: XP_022960081.1 (60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_023004692.1 60S ribosomal protein L22-2-like [Cucurbita maxima] >KAG6593201.1 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.0 bits (606), Expect = 4.3e-59
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRGAAASGGPKGKKKG +FVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of Lag0002559 vs. NCBI nr
Match: XP_022953729.1 (60S ribosomal protein L22-2-like [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRGAAASG PKGKKKGV+FVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGCPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot
Match: Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRG AA    KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot
Match: Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           MSRG AA+   KGKKKGVSF IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TREK+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot
Match: Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-41
Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVT 60
           M+R  A S G   KKKGVSFVIDC+KPV+D I++IA+LEKFL ERIKV GK GALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot
Match: P47198 (60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 7   ASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDS-VTVTREK 66
           A GG K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GK G LG   VT+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot
Match: P13732 (60S ribosomal protein L22 OS=Tripneustes gratilla OX=7673 GN=RPL22 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 3   RGAAASGGPKGKKKGVSFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKTGALGDSVTVT 62
           +G   SG  K KK+ + F IDC  PVED IMD ++ E+FL ERIKV GKT  L  ++ + 
Sbjct: 8   KGGRPSGKGKKKKQTLKFTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIE 67

Query: 63  REKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 122
           R+K+K+TV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A+NK+   YELRYF I +++ 
Sbjct: 68  RKKSKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDE 127

Query: 123 EEED 127
           EEED
Sbjct: 128 EEED 129

The following BLAST results are available for this feature:

BLAST of Lag0002559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136027.1	8.7e-60	97.62	60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S rib...	[more]
XP_023548993.1	1.9e-59	96.83	60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ...	[more]
XP_022991268.1	4.3e-59	96.03	60S ribosomal protein L22-2-like [Cucurbita maxima]	[more]
XP_022960081.1	4.3e-59	96.83	60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_023004692.1 60S riboso...	[more]
XP_022953729.1	2.1e-58	96.03	60S ribosomal protein L22-2-like [Cucurbita moschata]	[more]

BLAST of Lag0002559 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9W1	1.1e-52	84.92	60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1	[more]
Q9FE58	1.2e-51	83.33	60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1	[more]
Q9SRX7	2.5e-41	69.05	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P...	[more]
P47198	1.4e-31	62.81	60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2	[more]
P13732	1.8e-31	58.06	60S ribosomal protein L22 OS=Tripneustes gratilla OX=7673 GN=RPL22 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002671	Ribosomal protein L22e	PFAM	PF01776	Ribosomal_L22e	coord: 16..124 e-value: 1.9E-46 score: 156.9
IPR002671	Ribosomal protein L22e	PANTHER	PTHR10064	60S RIBOSOMAL PROTEIN L22	coord: 1..126
IPR038526	Ribosomal protein L22e superfamily	GENE3D	3.30.1360.210		coord: 7..126 e-value: 1.3E-56 score: 191.7
None	No IPR available	PANTHER	PTHR10064:SF13	SUBFAMILY NOT NAMED	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002559.1	Lag0002559.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome