Lag0002554 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002554
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 43799314 .. 43800489 (+)
RNA-Seq Expression	Lag0002554
Synteny	Lag0002554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCAAAGGATGAAATCTTTTGGGGGTCGAATCCAAAGGGGAATTTCACCGTCGTCAAACATGCCTACTTCTTAGCACAAAATCTCTCAATAGTTGAGGATGTTTCTACGTCAAATCCCTTGAAGTTAAAAGCGATGTGGAAAGACCAATGGAAAACCAAGGTCATCCCTAAGGAGAAAACTTGTGCTTGGAGGGAAATCCAAAACATTTTACCAACCCAAGCAAATGTTACAGCTAAATATCCTCAAATGACGTCGTATAGACCTCTGTTTTCACAATCTCAAACTCAACTTAATGTCATTTTTTCTTAGGTCTTAGTCATCAACCTTTCTCTAAAATTTCCAAATCCCTTTTGCAATCTCAAAGAAAACAACATTAAAATTCAACGTATGTATTCGAATTCGAATCTAATTGCCTAAATACTTATTCGAGCTAATATATATATATAGAAAAGTAAATGTATTAACAGAGAAACCAAGAGTTAGGTACAACGGGAAAATAGGAAACAGAGGGGAATGATGCTAAAACGGAAAAACAGGGAGGAGATCAAACACAAGTCCATCTTCCGACAAGGAAGATCATTTGAAGTTCTTGGACAATGACGAAATTTCTCTCTCCCAAGTTTGTAACGAGGTCAAACTAAAACTTATAAAAATAAAATAAATTTGGTCTCTAATTGGATGCAATTATTCCTCTAAAATAAAATAGAGGGAAAAAAATCATTTTTATCCCTAAACTTTTGGGTTGTATCAATTTTAACCCTAAACTTTCATTTTCATAGACGGTGGGAACTAAAGTGCTACTTATCTCAAACCAGTATTTTTGTTGAGTTTGAAAACTGACAAAGTGTAACTTAACCCAAACTTCAAAGATAAAAAGTGTATTTTTCCATTTTAAGAAAGAAAAAAATGTCATATTAATTATTAGGCAGACCTTTCTTATTTGCCATCCGAACCCTAAATTAAGAAACGTGGTCTCTCTTTCAGGAGCACGACCAGGACCGTACCGTCCAGACCGCCACCGATGAAAGCCACCCCTCAGCCGCCCACCGTCGTCCGTTTCCTCTCTTCACCGTTAGATGTCGGCTCTGGCCACCGCCGTCTGAAGGTTTCGATCGTCGCAGGAGTAAGGCCTCTGCCCCTCAGCTTTCATTTTCAGTTACTGTCTAA

mRNA sequence

ATGAACAACTCAAAGGATGAAATCTTTTGGGGGTCGAATCCAAAGGGGAATTTCACCGTCGTCAAACATGCCTACTTCTTAGCACAAAATCTCTCAATAGTTGAGGATGTTTCTACGTCAAATCCCTTGAAGTTAAAAGCGATGTGGAAAGACCAATGGAAAACCAAGGTCATCCCTAAGGAGAAAACTTGTGCTTGGAGGGAAATCCAAAACATTTTACCAACCCAAGCAAATGTTACAGCTAAATATCCTCAAATGACGTCGTATAGACCTCTGTTTTCACAATCTCAAACTCAACTTAATGAGCACGACCAGGACCGTACCGTCCAGACCGCCACCGATGAAAGCCACCCCTCAGCCGCCCACCGTCGTCCGTTTCCTCTCTTCACCGTTAGATGTCGGCTCTGGCCACCGCCGTCTGAAGGTTTCGATCGTCGCAGGAGTAAGGCCTCTGCCCCTCAGCTTTCATTTTCAGTTACTGTCTAA

Coding sequence (CDS)

ATGAACAACTCAAAGGATGAAATCTTTTGGGGGTCGAATCCAAAGGGGAATTTCACCGTCGTCAAACATGCCTACTTCTTAGCACAAAATCTCTCAATAGTTGAGGATGTTTCTACGTCAAATCCCTTGAAGTTAAAAGCGATGTGGAAAGACCAATGGAAAACCAAGGTCATCCCTAAGGAGAAAACTTGTGCTTGGAGGGAAATCCAAAACATTTTACCAACCCAAGCAAATGTTACAGCTAAATATCCTCAAATGACGTCGTATAGACCTCTGTTTTCACAATCTCAAACTCAACTTAATGAGCACGACCAGGACCGTACCGTCCAGACCGCCACCGATGAAAGCCACCCCTCAGCCGCCCACCGTCGTCCGTTTCCTCTCTTCACCGTTAGATGTCGGCTCTGGCCACCGCCGTCTGAAGGTTTCGATCGTCGCAGGAGTAAGGCCTCTGCCCCTCAGCTTTCATTTTCAGTTACTGTCTAA

Protein sequence

MNNSKDEIFWGSNPKGNFTVVKHAYFLAQNLSIVEDVSTSNPLKLKAMWKDQWKTKVIPKEKTCAWREIQNILPTQANVTAKYPQMTSYRPLFSQSQTQLNEHDQDRTVQTATDESHPSAAHRRPFPLFTVRCRLWPPPSEGFDRRRSKASAPQLSFSVTV

Homology

[Close]

BLAST of Lag0002554 vs. NCBI nr
Match: XP_028946810.1 (uncharacterized protein LOC103403753 [Malus domestica])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 6   DEIFWGSNPKGNFTVVKHAYFLAQNLSIV---EDVSTSNPLKLKAMWKDQWKTKVIPKEK 65
           DE+FW  +PKG FT  K AYF+A+  S +     V +  P ++K +WK  W+ KV  K K
Sbjct: 22  DELFWCKDPKGVFT-TKSAYFVARTCSDICGEVPVGSEMPAEIKFLWKALWRAKVPEKIK 81

Query: 66  TCAWREIQNILPTQANVTAK 83
            C WR   N LP++AN+  K
Sbjct: 82  ICIWRGCLNALPSRANLKLK 100

[Close]

BLAST of Lag0002554 vs. NCBI nr
Match: XP_030970994.1 (uncharacterized protein LOC115991444 [Quercus lobata])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 4   SKDEIFWGSNPKGNFTVVKHAYFLAQNLSIVEDVSTSNPLKLKAMWKDQWKTKVIPKEKT 63
           +KD IFW  N  GN++ VK  Y +     +V+  S SNP  +KA+WK  WK KV P+ + 
Sbjct: 326 NKDSIFWPRNHNGNYS-VKSGYKMLLEEEVVDLPSASNPSPMKAVWKGIWKLKVPPRIRN 385

Query: 64  CAWREIQNILPTQANVTAK 83
             WR   + LPT+ N+  +
Sbjct: 386 LLWRARSDSLPTRVNLAKR 403

[Close]

BLAST of Lag0002554 vs. NCBI nr
Match: XP_040374850.1 (uncharacterized protein LOC112200370 [Rosa chinensis])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 3   NSKDEIFWGSNPKGNFTVVKHAYFLAQNLSIVEDVSTSNPLKLKAMWKDQWKTKVIPKEK 62
           N +D   WG + +G FT VK AY +A+N  + +  +T NP    ++W   W + V    K
Sbjct: 597 NHEDRWIWGGDKRGQFT-VKSAYHVARNRILTDHSTTPNP--SASLWHRLWNSTVPGSVK 656

Query: 63  TCAWREIQNILPTQANVTAKYPQMTSYRPL 93
            CAW+ + N+LPT++ ++ +   + +  PL
Sbjct: 657 VCAWKAVSNVLPTRSRLSERGIDLDTQCPL 683

[Close]

BLAST of Lag0002554 vs. NCBI nr
Match: XP_024178154.1 (uncharacterized protein LOC112184104 [Rosa chinensis])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-05
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 2   NNSKDEIFWGSNPKGNFTVVKHAYFLAQNLSIVEDVSTSNPLKLKAMWKDQWKTKVIPKE 61
           +N  D   WG + KG FT VK AY +AQN  + +D ST NP     +WK  W+  V    
Sbjct: 26  HNHGDRWIWGGDKKGGFT-VKFAYHIAQNRILEDDFSTPNP--SATLWKHLWQAPVQGNV 85

Query: 62  KTCAWREIQNILPTQANVTAK 83
           K C  +   NILPT++ ++ +
Sbjct: 86  KVCVRKAAANILPTRSRLSER 103

[Close]

BLAST of Lag0002554 vs. NCBI nr
Match: KAB2598128.1 (ribonuclease H protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-05
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 6   DEIFWGSNPKGNFTVVKHAYFLAQNLS-IVEDVSTSNPLKLKAMWKDQWKTKVIPKEKTC 65
           DE+ W   PKGNFT  K  YF+ ++ S I  D+   + + L   WK  W+ KV  K K C
Sbjct: 42  DELIWIKEPKGNFT-TKSTYFVVRSCSEICGDILNGSAMTL---WKALWRAKVPGKVKIC 101

Query: 66  AWREIQNILPTQANV 80
            WR   N LPT+ N+
Sbjct: 102 IWRSCLNALPTRVNL 112

The following BLAST results are available for this feature:

BLAST of Lag0002554 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028946810.1	3.8e-07	42.50	uncharacterized protein LOC103403753 [Malus domestica]	[more]
XP_030970994.1	1.4e-06	39.24	uncharacterized protein LOC115991444 [Quercus lobata]	[more]
XP_040374850.1	2.1e-05	32.22	uncharacterized protein LOC112200370 [Rosa chinensis]	[more]
XP_024178154.1	4.6e-05	38.27	uncharacterized protein LOC112184104 [Rosa chinensis]	[more]
KAB2598128.1	7.8e-05	41.33	ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Lag0002554 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002554.1	Lag0002554.1	mRNA