Lag0002519 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002519
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	aspartyl protease family protein At5g10770
Location	chr4: 43534319 .. 43534671 (+)
RNA-Seq Expression	Lag0002519
Synteny	Lag0002519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCAAATCCCAAGATGTCCAATTATTACCTTTTGAATTTGACTGGAATCAACATCGGTGGGGTGAAATTGGATGCGCTGCGCTTGGCTTCGAATAATGGGGTTGTGGGTTTAATCTTACTGGGGTTAAGTAAGTGGATATTCCGCCCGTGAAATTTTACTTTGAAGGTGATTCAGAGCTGAGTGTGGATGCTGAAGGGATTTTTTACTTTGTGAAATCTGATTCTTCTCGGAGATGTTTGGCGCATCGAGTGCGGCTGATGAAGATCGCCTTGGGGTTATTGGAAATTATCAGCAGAAGAATCAAAGGGTTGTTTATAATACCAAGGAATCCAAGCTGGGTTGTTTAG

mRNA sequence

ATGATCTCAAATCCCAAGATGTCCAATTATTACCTTTTGAATTTGACTGGAATCAACATCGGTGGGGTGAAATTGGATGCGCTGCGCTTGGCTTCGAATAATGGGGTTGTGGGTGATTCAGAGCTGAGTGTGGATGCTGAAGGGATTTTTTACTTTGTGAAATCTGATTCTTCTCGGAGATGTTTGGCGCATCGAGTGCGGCTGATGAAGATCGCCTTGGGGTTATTGGAAATTATCAGCAGAAGAATCAAAGGGTTGTTTATAATACCAAGGAATCCAAGCTGGGTTGTTTAG

Coding sequence (CDS)

ATGATCTCAAATCCCAAGATGTCCAATTATTACCTTTTGAATTTGACTGGAATCAACATCGGTGGGGTGAAATTGGATGCGCTGCGCTTGGCTTCGAATAATGGGGTTGTGGGTGATTCAGAGCTGAGTGTGGATGCTGAAGGGATTTTTTACTTTGTGAAATCTGATTCTTCTCGGAGATGTTTGGCGCATCGAGTGCGGCTGATGAAGATCGCCTTGGGGTTATTGGAAATTATCAGCAGAAGAATCAAAGGGTTGTTTATAATACCAAGGAATCCAAGCTGGGTTGTTTAG

Protein sequence

MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVVGDSELSVDAEGIFYFVKSDSSRRCLAHRVRLMKIALGLLEIISRRIKGLFIIPRNPSWVV

Homology

[Close]

BLAST of Lag0002519 vs. NCBI nr
Match: XP_008461208.1 (PREDICTED: aspartyl protease family protein At5g10770 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 42/125 (33.60%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 1   MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVV----------------------- 60
           MI NP+MSN+Y LNLTGI+IGGV L+  RL+SN GV+                       
Sbjct: 331 MIQNPQMSNFYFLNLTGISIGGVNLNVPRLSSNEGVLSLLDSGTVITRLSPSIYKAFKAE 390

Query: 61  ---------------------------------------GDSELSVDAEGIFYFVKSDSS 64
                                                  G++E+ VD EG+FYFVKSD+S
Sbjct: 391 FEKQFSGYRTTPGFSILNTCFNLTGYEEVNIPTVKFIFEGNAEMIVDVEGVFYFVKSDAS 450

[Close]

BLAST of Lag0002519 vs. NCBI nr
Match: KAA0058691.1 (aspartyl protease family protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 42/125 (33.60%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 1   MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVV----------------------- 60
           MI NP+MSN+Y LNLTGI+IGGV L+  RL+SN GV+                       
Sbjct: 332 MIQNPQMSNFYFLNLTGISIGGVNLNVPRLSSNEGVLSLLDSGTVITRLSPSIYKAFKAE 391

Query: 61  ---------------------------------------GDSELSVDAEGIFYFVKSDSS 64
                                                  G++E+ VD EG+FYFVKSD+S
Sbjct: 392 FEKQFSGYRTTPGFSILNTCFNLTGYEEVNIPTVKFIFEGNAEMIVDVEGVFYFVKSDAS 451

[Close]

BLAST of Lag0002519 vs. NCBI nr
Match: XP_004135889.2 (aspartyl protease family protein At5g10770 [Cucumis sativus] >KGN45199.1 hypothetical protein Csa_015932 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 42/125 (33.60%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 1   MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVV----------------------- 60
           MI NP+MSN+Y LNLTGI+IGGV L+  RL+SN GV+                       
Sbjct: 331 MIQNPQMSNFYFLNLTGISIGGVNLNVPRLSSNEGVLSLLDSGTVITRLSPSIYKAFKAE 390

Query: 61  ---------------------------------------GDSELSVDAEGIFYFVKSDSS 64
                                                  G++E+ VD EG+FYFVKSD+S
Sbjct: 391 FEKQFSGYRTTPGFSILNTCFNLTGYEEVNIPTVKFIFEGNAEMIVDVEGVFYFVKSDAS 450

[Close]

BLAST of Lag0002519 vs. NCBI nr
Match: TYK10497.1 (aspartyl protease family protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 42/125 (33.60%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 1   MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVV----------------------- 60
           MI NP+MSN+Y LNLTGI+IGGV L+  RL+SN GV+                       
Sbjct: 252 MIQNPQMSNFYFLNLTGISIGGVNLNVPRLSSNEGVLSLLDSGTVITRLSPSIYKAFKAE 311

Query: 61  ---------------------------------------GDSELSVDAEGIFYFVKSDSS 64
                                                  G++E+ VD EG+FYFVKSD+S
Sbjct: 312 FEKQFSGYRTTPGFSILNTCFNLTGYEEVNIPTVKFIFEGNAEMIVDVEGVFYFVKSDAS 371

[Close]

BLAST of Lag0002519 vs. NCBI nr
Match: XP_038899807.1 (aspartyl protease family protein At5g10770 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-06
Identity = 40/125 (32.00%), Postives = 53/125 (42.40%), Query Frame = 0


Query: 1   MISNPKMSNYYLLNLTGINIGGVKLDALRLASNNGVV----------------------- 60
           M+ NP+MSN+Y LNLTGI+IGGV L+   L SN G++                       
Sbjct: 325 MVQNPQMSNFYFLNLTGISIGGVNLNVPGLTSNEGIMSLIDSGTVITRLSPSIYRAFKAE 384

Query: 61  ---------------------------------------GDSELSVDAEGIFYFVKSDSS 64
                                                  G++E++VD EGIFYFVKSD+S
Sbjct: 385 FEKQFSGYKTTPGFSILNTCYNLSGYQEVNIPTVKFIFEGNAEMTVDVEGIFYFVKSDAS 444

The following BLAST results are available for this feature:

BLAST of Lag0002519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461208.1	1.1e-06	33.60	PREDICTED: aspartyl protease family protein At5g10770 [Cucumis melo]	[more]
KAA0058691.1	1.1e-06	33.60	aspartyl protease family protein [Cucumis melo var. makuwa]	[more]
XP_004135889.2	1.1e-06	33.60	aspartyl protease family protein At5g10770 [Cucumis sativus] >KGN45199.1 hypothe...	[more]
TYK10497.1	1.1e-06	33.60	aspartyl protease family protein [Cucumis melo var. makuwa]	[more]
XP_038899807.1	5.6e-06	32.00	aspartyl protease family protein At5g10770 [Benincasa hispida]	[more]

BLAST of Lag0002519 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002519.1	Lag0002519.1	mRNA