Lag0002497 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002497
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutaredoxin
Location	chr4: 43357622 .. 43357936 (+)
RNA-Seq Expression	Lag0002497
Synteny	Lag0002497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGAATGCAGTAAAAGGATTGGTAGCTGAGAAGCCAGTAGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGTCACTTATATCAAGCTTTGGGGCTAATCCTACTGTCTATGAGCTTGATGAGATACCCAATGGGCAGCAGATTGAAACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCAGCTGTGTTCATTGGAGAGAAGTTAATTGGTGGTGCTAGAGAGCTCATGAGCCTGCAGGTCAGAAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

mRNA sequence

ATGGATATGAATGCAGTAAAAGGATTGGTAGCTGAGAAGCCAGTAGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGTCACTTATATCAAGCTTTGGGGCTAATCCTACTGTCTATGAGCTTGATGAGATACCCAATGGGCAGCAGATTGAAACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCAGCTGTGTTCATTGGAGAGAAGTTAATTGGTGGTGCTAGAGAGCTCATGAGCCTGCAGGTCAGAAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

Coding sequence (CDS)

ATGGATATGAATGCAGTAAAAGGATTGGTAGCTGAGAAGCCAGTAGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGTCACTTATATCAAGCTTTGGGGCTAATCCTACTGTCTATGAGCTTGATGAGATACCCAATGGGCAGCAGATTGAAACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCAGCTGTGTTCATTGGAGAGAAGTTAATTGGTGGTGCTAGAGAGCTCATGAGCCTGCAGGTCAGAAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

Protein sequence

MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV

Homology

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BLAST of Lag0002497 vs. NCBI nr
Match: NP_001295830.1 (monothiol glutaredoxin-S1-like [Cucumis sativus] >XP_008451626.1 PREDICTED: monothiol glutaredoxin-S1-like [Cucumis melo] >AGX01500.1 glutaredoxin [Cucumis sativus] >KAA0068041.1 monothiol glutaredoxin-S6-like [Cucumis melo var. makuwa] >TYK18087.1 monothiol glutaredoxin-S6-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVK+LISSFGANPTVYELDEIPNG QIETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGCQPCVPA+FIG+KLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 104

[Close]

BLAST of Lag0002497 vs. NCBI nr
Match: KAE8646328.1 (hypothetical protein Csa_016873 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.2e-48
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVK+LISSFGANPTVYELDEIPNG QIETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIW 104
           LGCQPCVPA+FIG+KLIGGARELMSLQVRNELMPLLMSARAIW
Sbjct: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIW 103

[Close]

BLAST of Lag0002497 vs. NCBI nr
Match: XP_038876744.1 (monothiol glutaredoxin-S1 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 98/104 (94.23%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVK+LISSFGANPTVYELDEIPNG+ IETLL+Q
Sbjct: 28  MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGRHIETLLIQ 87

Query: 61  LGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGCQPCVPA+FIG+KLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 88  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 131

[Close]

BLAST of Lag0002497 vs. NCBI nr
Match: XP_022953806.1 (monothiol glutaredoxin-S1-like [Cucurbita moschata] >XP_023548370.1 monothiol glutaredoxin-S1-like [Cucurbita pepo subsp. pepo] >KAG7014389.1 Monothiol glutaredoxin-S1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVK+LISSFGANPTVYELDEIPNG QIETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGC+PCVP VFIG+KLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 61  LGCEPCVPVVFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 104

[Close]

BLAST of Lag0002497 vs. NCBI nr
Match: KAG6575854.1 (Monothiol glutaredoxin-S1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVK+LISSFGANPTVYELDEIPNG QIETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKALISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGC+PCVP VFIG+KLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 61  LGCEPCVPVVFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 104

[Close]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot
Match: Q9SA68 (Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana OX=3702 GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-30
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLG 62
           M  +  L+ +KPVVIFS++ C MS+++KSLIS +GAN TVYELDE+ NG +IE  L++LG
Sbjct: 1   MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELG 60

Query: 63  CQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C+P VPAVFIG++L+GGA +LMSLQVRN+L  LL  A AIW+
Sbjct: 61  CKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102

[Close]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot
Match: Q9LYC8 (Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana OX=3702 GN=GRXS6 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 60/102 (58.82%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLG 62
           M +V+ LV +KPVVIFS+S C MS+++++LIS FGA  TVYELD+  NGQ+IE  L+Q+G
Sbjct: 1   MESVRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMG 60

Query: 63  CQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C+P VPAVFIG++ IGGA ++M+LQV+N+L  +L  A AIWV
Sbjct: 61  CKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102

[Close]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot
Match: Q8L8Z8 (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana OX=3702 GN=GRXS2 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-28
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLG 62
           M+ +  +V E+PVVI+S+S C MS+T+K+L+  FGANP VYELDEI  G++IE  LL+LG
Sbjct: 1   MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLG 60

Query: 63  CQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP VFIG +L+GGA E+MSL +   L+P+L  A A+WV
Sbjct: 61  CSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

[Close]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot
Match: O23419 (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.2e-26
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLG 62
           M+ ++ +++EK VVIFS++ C MS+T+K+L   FG NPT+YELDEI  G++IE  L QLG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 63  CQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP VFIG +L+GGA ++MSL +   L+P+L    A+W+
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

[Close]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot
Match: O23420 (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana OX=3702 GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKSLISSFGANPTVYELDEIPNGQQIETLLLQLG 62
           M  ++ +++EK VVIFS++ C MS+T+K+L   FG NPT+YELDEI  G++IE  L QLG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLG 60

Query: 63  CQPCVPAVFIGEKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP VFIG +L+GGA ++MSL +   L+P+L  A A+W+
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

The following BLAST results are available for this feature:

BLAST of Lag0002497 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001295830.1	2.8e-48	96.15	monothiol glutaredoxin-S1-like [Cucumis sativus] >XP_008451626.1 PREDICTED: mono...	[more]
KAE8646328.1	8.2e-48	96.12	hypothetical protein Csa_016873 [Cucumis sativus]	[more]
XP_038876744.1	1.4e-47	94.23	monothiol glutaredoxin-S1 [Benincasa hispida]	[more]
XP_022953806.1	1.4e-47	95.19	monothiol glutaredoxin-S1-like [Cucurbita moschata] >XP_023548370.1 monothiol gl...	[more]
KAG6575854.1	1.4e-47	95.19	Monothiol glutaredoxin-S1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0002497 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SA68	1.2e-30	60.78	Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana OX=3702 GN=GRXS1 PE=3 SV=1	[more]
Q9LYC8	1.8e-29	58.82	Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana OX=3702 GN=GRXS6 PE=3 SV=1	[more]
Q8L8Z8	4.4e-28	55.88	Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana OX=3702 GN=GRXS2 PE=3 SV=1	[more]
O23419	9.2e-26	50.98	Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1	[more]
O23420	1.2e-25	51.96	Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana OX=3702 GN=GRXS5 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 15..33 score: 29.61 coord: 74..87 score: 34.23 coord: 60..73 score: 38.1
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 15..77 e-value: 3.1E-9 score: 36.9
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 3..101 e-value: 6.3E-26 score: 92.2
None	No IPR available	PANTHER	PTHR10168:SF200	MONOTHIOL GLUTAREDOXIN-S6	coord: 3..103
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 3..103 score: 19.717386
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 14..95 e-value: 6.74488E-34 score: 110.322
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 7..104 e-value: 2.3E-33 score: 112.1
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 3..103
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002497.1	Lag0002497.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity