Lag0002494 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002494
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlutaredoxin family protein
Locationchr4: 43338684 .. 43338995 (-)
RNA-Seq ExpressionLag0002494
SyntenyLag0002494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

mRNA sequence

ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

Coding sequence (CDS)

ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

Protein sequence

MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLGCNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY
Homology
[Close]
BLAST of Lag0002494 vs. NCBI nr
Match: XP_038876718.1 (monothiol glutaredoxin-S11-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]
BLAST of Lag0002494 vs. NCBI nr
Match: XP_004136055.1 (monothiol glutaredoxin-S11 [Cucumis sativus] >XP_008451631.1 PREDICTED: monothiol glutaredoxin-S11 [Cucumis melo] >KAA0068044.1 monothiol glutaredoxin-S11-like [Cucumis melo var. makuwa] >TYK18084.1 monothiol glutaredoxin-S11-like [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 9.6e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPDYREIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDYREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]
BLAST of Lag0002494 vs. NCBI nr
Match: XP_022954100.1 (monothiol glutaredoxin-S11-like [Cucurbita moschata] >XP_023549072.1 monothiol glutaredoxin-S11-like [Cucurbita pepo subsp. pepo] >KAG6575857.1 Monothiol glutaredoxin-S11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPD REIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDCREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]
BLAST of Lag0002494 vs. NCBI nr
Match: XP_022992475.1 (monothiol glutaredoxin-S11-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPD REIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDCREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+Q+ ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQNHALNKY 103

[Close]
BLAST of Lag0002494 vs. NCBI nr
Match: XP_022150267.1 (monothiol glutaredoxin-S11-like [Momordica charantia] >XP_022150268.1 monothiol glutaredoxin-S11-like [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-46
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKR  AERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPD REIEKAL++LG
Sbjct: 1   MDKVKRFAAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDCREIEKALVKLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: O04341 (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana OX=3702 GN=GRXS9 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-34
Identity = 67/99 (67.68%), Postives = 84/99 (84.85%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIFSKSSCC+SYAV +LF +LGV+P V+EID+DP+ REIEKALMRLG
Sbjct: 1   MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQA 100
           C+ PVPA+F+GGKL+GSTNE+MS HLSG L  ++   QA
Sbjct: 61  CSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVKPFQA 99

[Close]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q9M9Y9 (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana OX=3702 GN=GRXS11 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 1  MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
          MDKV R+ +E+ VVIF+KSSCCLSYAV +LF +LGVNP ++EID+DP+ REIEKALMRLG
Sbjct: 1  MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLG 60

Query: 61 CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML 95
          C+ PVPAVFIGGKLVGSTNE+MS HLS  L  ++
Sbjct: 61 CSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94

[Close]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: O82255 (Glutaredoxin-C13 OS=Arabidopsis thaliana OX=3702 GN=GRXC13 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIF+KSSCCL YAV ILF +L V P ++EID DPD REIEKAL+RLG
Sbjct: 1   MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQAL 101
           C+  VPAVF+GGKLVGSTNE+MS HLSG L  ++   Q++
Sbjct: 61  CSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLIKPYQSI 100

[Close]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q9LYC5 (Glutaredoxin-C14 OS=Arabidopsis thaliana OX=3702 GN=GRXC14 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-30
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIF+KSSCCL YAV ILF +L V P ++EID DPD REIEKAL+RLG
Sbjct: 1   MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALVRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALN 102
           C   VPAVF+ GKLVGSTN++MS HLSG L  ++   Q+ +
Sbjct: 61  CANAVPAVFVSGKLVGSTNDVMSLHLSGSLVPLIKPYQSFH 101

[Close]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q7G8Y5 (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.0e-26
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMR-L 60
           MD+V RL A+R+VVIFS SSCC+ + V  LF ELGVNP V E+D+DP  +E+EKAL R L
Sbjct: 1   MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLL 60

Query: 61  GCNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQAL 101
           G +  VPAVFIGG+LVGST+++MS HLSG+L  +L  + AL
Sbjct: 61  GRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101

The following BLAST results are available for this feature:
BLAST of Lag0002494 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876718.11.9e-4998.06monothiol glutaredoxin-S11-like [Benincasa hispida][more]
XP_004136055.19.6e-4997.09monothiol glutaredoxin-S11 [Cucumis sativus] >XP_008451631.1 PREDICTED: monothio... [more]
XP_022954100.11.1e-4796.12monothiol glutaredoxin-S11-like [Cucurbita moschata] >XP_023549072.1 monothiol g... [more]
XP_022992475.12.4e-4795.15monothiol glutaredoxin-S11-like [Cucurbita maxima][more]
XP_022150267.11.2e-4693.20monothiol glutaredoxin-S11-like [Momordica charantia] >XP_022150268.1 monothiol ... [more]
BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O043414.1e-3467.68Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana OX=3702 GN=GRXS9 PE=1 SV=1[more]
Q9M9Y91.6e-3371.28Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana OX=3702 GN=GRXS11 PE=3 SV=1[more]
O822551.1e-3165.00Glutaredoxin-C13 OS=Arabidopsis thaliana OX=3702 GN=GRXC13 PE=1 SV=1[more]
Q9LYC58.0e-3062.38Glutaredoxin-C14 OS=Arabidopsis thaliana OX=3702 GN=GRXC14 PE=3 SV=1[more]
Q7G8Y57.0e-2660.40Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011905Glutaredoxin-like, plant IITIGRFAMTIGR02189TIGR02189coord: 4..100
e-value: 4.0E-40
score: 133.8
IPR011905Glutaredoxin-like, plant IIPANTHERPTHR10168GLUTAREDOXINcoord: 1..98
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 13..75
e-value: 2.5E-10
score: 40.4
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..102
e-value: 4.6E-25
score: 89.4
NoneNo IPR availablePANTHERPTHR10168:SF224MONOTHIOL GLUTAREDOXIN-S11coord: 1..98
NoneNo IPR availablePROSITEPS51354GLUTAREDOXIN_2coord: 1..101
score: 19.902054
NoneNo IPR availableCDDcd03419GRX_GRXh_1_2_likecoord: 13..93
e-value: 2.29771E-30
score: 101.462
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002494.1Lag0002494.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0097573 glutathione oxidoreductase activity