Lag0002494 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002494
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutaredoxin family protein
Location	chr4: 43338684 .. 43338995 (-)
RNA-Seq Expression	Lag0002494
Synteny	Lag0002494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

mRNA sequence

ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

Coding sequence (CDS)

ATGGATAAGGTTAAAAGGTTGGTTGCAGAGAGGAGTGTGGTCATATTCAGCAAGAGCTCATGCTGCCTATCATATGCAGTTAACATTCTATTCGGGGAACTTGGAGTCAATCCTTTCGTGTATGAGATTGACCAAGACCCTGATTACAGGGAAATAGAGAAAGCTCTCATGAGGCTGGGATGCAATGCACCAGTACCAGCTGTGTTCATCGGCGGAAAGCTGGTCGGATCCACAAATGAAATCATGTCTCACCACCTTAGCGGTGATCTCACCAAAATGCTGATGCAAAGCCAGGCTTTGAATAAATACTAA

Protein sequence

MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLGCNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY

Homology

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BLAST of Lag0002494 vs. NCBI nr
Match: XP_038876718.1 (monothiol glutaredoxin-S11-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

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BLAST of Lag0002494 vs. NCBI nr
Match: XP_004136055.1 (monothiol glutaredoxin-S11 [Cucumis sativus] >XP_008451631.1 PREDICTED: monothiol glutaredoxin-S11 [Cucumis melo] >KAA0068044.1 monothiol glutaredoxin-S11-like [Cucumis melo var. makuwa] >TYK18084.1 monothiol glutaredoxin-S11-like [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 9.6e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPDYREIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDYREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]

BLAST of Lag0002494 vs. NCBI nr
Match: XP_022954100.1 (monothiol glutaredoxin-S11-like [Cucurbita moschata] >XP_023549072.1 monothiol glutaredoxin-S11-like [Cucurbita pepo subsp. pepo] >KAG6575857.1 Monothiol glutaredoxin-S11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPD REIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDCREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

[Close]

BLAST of Lag0002494 vs. NCBI nr
Match: XP_022992475.1 (monothiol glutaredoxin-S11-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNP VYEIDQDPD REIEKALMRLG
Sbjct: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPLVYEIDQDPDCREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+Q+ ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQNHALNKY 103

[Close]

BLAST of Lag0002494 vs. NCBI nr
Match: XP_022150267.1 (monothiol glutaredoxin-S11-like [Momordica charantia] >XP_022150268.1 monothiol glutaredoxin-S11-like [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-46
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKVKR  AERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPD REIEKAL++LG
Sbjct: 1   MDKVKRFAAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDCREIEKALVKLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALNKY 104
           CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML+QS ALNKY
Sbjct: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLVQSHALNKY 103

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BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: O04341 (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana OX=3702 GN=GRXS9 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-34
Identity = 67/99 (67.68%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIFSKSSCC+SYAV +LF +LGV+P V+EID+DP+ REIEKALMRLG
Sbjct: 1   MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQA 100
           C+ PVPA+F+GGKL+GSTNE+MS HLSG L  ++   QA
Sbjct: 61  CSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVKPFQA 99

[Close]

BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q9M9Y9 (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana OX=3702 GN=GRXS11 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
          MDKV R+ +E+ VVIF+KSSCCLSYAV +LF +LGVNP ++EID+DP+ REIEKALMRLG
Sbjct: 1  MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLG 60

Query: 61 CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKML 95
          C+ PVPAVFIGGKLVGSTNE+MS HLS  L  ++
Sbjct: 61 CSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94

[Close]

BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: O82255 (Glutaredoxin-C13 OS=Arabidopsis thaliana OX=3702 GN=GRXC13 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIF+KSSCCL YAV ILF +L V P ++EID DPD REIEKAL+RLG
Sbjct: 1   MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQAL 101
           C+  VPAVF+GGKLVGSTNE+MS HLSG L  ++   Q++
Sbjct: 61  CSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLIKPYQSI 100

[Close]

BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q9LYC5 (Glutaredoxin-C14 OS=Arabidopsis thaliana OX=3702 GN=GRXC14 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-30
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMRLG 60
           MDKV R+ +E+ VVIF+KSSCCL YAV ILF +L V P ++EID DPD REIEKAL+RLG
Sbjct: 1   MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALVRLG 60

Query: 61  CNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQALN 102
           C   VPAVF+ GKLVGSTN++MS HLSG L  ++   Q+ +
Sbjct: 61  CANAVPAVFVSGKLVGSTNDVMSLHLSGSLVPLIKPYQSFH 101

[Close]

BLAST of Lag0002494 vs. ExPASy Swiss-Prot
Match: Q7G8Y5 (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.0e-26
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MDKVKRLVAERSVVIFSKSSCCLSYAVNILFGELGVNPFVYEIDQDPDYREIEKALMR-L 60
           MD+V RL A+R+VVIFS SSCC+ + V  LF ELGVNP V E+D+DP  +E+EKAL R L
Sbjct: 1   MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLL 60

Query: 61  GCNAPVPAVFIGGKLVGSTNEIMSHHLSGDLTKMLMQSQAL 101
           G +  VPAVFIGG+LVGST+++MS HLSG+L  +L  + AL
Sbjct: 61  GRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101

The following BLAST results are available for this feature:

BLAST of Lag0002494 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876718.1	1.9e-49	98.06	monothiol glutaredoxin-S11-like [Benincasa hispida]	[more]
XP_004136055.1	9.6e-49	97.09	monothiol glutaredoxin-S11 [Cucumis sativus] >XP_008451631.1 PREDICTED: monothio...	[more]
XP_022954100.1	1.1e-47	96.12	monothiol glutaredoxin-S11-like [Cucurbita moschata] >XP_023549072.1 monothiol g...	[more]
XP_022992475.1	2.4e-47	95.15	monothiol glutaredoxin-S11-like [Cucurbita maxima]	[more]
XP_022150267.1	1.2e-46	93.20	monothiol glutaredoxin-S11-like [Momordica charantia] >XP_022150268.1 monothiol ...	[more]

BLAST of Lag0002494 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04341	4.1e-34	67.68	Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana OX=3702 GN=GRXS9 PE=1 SV=1	[more]
Q9M9Y9	1.6e-33	71.28	Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana OX=3702 GN=GRXS11 PE=3 SV=1	[more]
O82255	1.1e-31	65.00	Glutaredoxin-C13 OS=Arabidopsis thaliana OX=3702 GN=GRXC13 PE=1 SV=1	[more]
Q9LYC5	8.0e-30	62.38	Glutaredoxin-C14 OS=Arabidopsis thaliana OX=3702 GN=GRXC14 PE=3 SV=1	[more]
Q7G8Y5	7.0e-26	60.40	Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 4..100 e-value: 4.0E-40 score: 133.8
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 1..98
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 13..75 e-value: 2.5E-10 score: 40.4
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..102 e-value: 4.6E-25 score: 89.4
None	No IPR available	PANTHER	PTHR10168:SF224	MONOTHIOL GLUTAREDOXIN-S11	coord: 1..98
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 1..101 score: 19.902054
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 13..93 e-value: 2.29771E-30 score: 101.462
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002494.1	Lag0002494.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097573	glutathione oxidoreductase activity