Lag0002492 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002492
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
Locationchr4: 43330761 .. 43331096 (-)
RNA-Seq ExpressionLag0002492
SyntenyLag0002492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCAAATCCCTACTTTCAATTGCTCTTGTCTCTCTTCTCTTGATCTCTGAATCCCCGGCCACTTCCGCCGCCGTCCACGGTGGAGCTTATTCCAATTCTCTTGCCGGAATCATTCACCGGAACATCCTTCAGACGGCGGATCATCGTCAAGTTGCAGAGAATAAGAATGGAGAGTACTCGTTTGAACAAAAGATCAGAAGGCGGCCCCGACGACCCGTAAAGAGAGCCGAAGGTCCAAGTCCGTCGGCTGCGAATCGGAGCCGAATGTCGTCGTTTGGTGTCGGGTCTGTGTTGTGTCTCTGTATTGTTCTTGGCTTGTTCGTATAG

mRNA sequence

ATGGCTTCCATCAAATCCCTACTTTCAATTGCTCTTGTCTCTCTTCTCTTGATCTCTGAATCCCCGGCCACTTCCGCCGCCGTCCACGGTGGAGCTTATTCCAATTCTCTTGCCGGAATCATTCACCGGAACATCCTTCAGACGGCGGATCATCGTCAAGTTGCAGAGAATAAGAATGGAGAGTACTCGTTTGAACAAAAGATCAGAAGGCGGCCCCGACGACCCGTAAAGAGAGCCGAAGGTCCAAGTCCGTCGGCTGCGAATCGGAGCCGAATGTCGTCGTTTGGTGTCGGGTCTGTGTTGTGTCTCTGTATTGTTCTTGGCTTGTTCGTATAG

Coding sequence (CDS)

ATGGCTTCCATCAAATCCCTACTTTCAATTGCTCTTGTCTCTCTTCTCTTGATCTCTGAATCCCCGGCCACTTCCGCCGCCGTCCACGGTGGAGCTTATTCCAATTCTCTTGCCGGAATCATTCACCGGAACATCCTTCAGACGGCGGATCATCGTCAAGTTGCAGAGAATAAGAATGGAGAGTACTCGTTTGAACAAAAGATCAGAAGGCGGCCCCGACGACCCGTAAAGAGAGCCGAAGGTCCAAGTCCGTCGGCTGCGAATCGGAGCCGAATGTCGTCGTTTGGTGTCGGGTCTGTGTTGTGTCTCTGTATTGTTCTTGGCTTGTTCGTATAG

Protein sequence

MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQTADHRQVAENKNGEYSFEQKIRRRPRRPVKRAEGPSPSAANRSRMSSFGVGSVLCLCIVLGLFV
Homology
BLAST of Lag0002492 vs. NCBI nr
Match: XP_022954099.1 (uncharacterized protein LOC111456466 [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-23
Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 0

Query: 1   MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQTADHRQVAENKNG 60
           MA IKSL+SIAL++LLL+SE    SAA HG A S  LA +  R+ LQTA+  QVAEN  G
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPS-PLARVFRRDTLQTAERHQVAENGIG 149

Query: 61  -EYSFEQKIRRRPRRPVKRAEGPSPSAANRSRMSSFGVGSVLCLCIVLGLFV 112
            +YSFEQKIRRR RR V+RAEGPSPS+AN S+ SSFGVGS+LCLC V GLF+
Sbjct: 150 YQYSFEQKIRRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLFL 200

BLAST of Lag0002492 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-23
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 1   MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQTADHRQVAENKNG 60
           MA IKSL+SIAL++LLL+ E    SAA HG A S  LAG+   + LQTA+  QVAEN  G
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPS-PLAGVFRLDTLQTAERHQVAENGIG 122

Query: 61  -EYSFEQKIRRRPRRPVKRAEGPSPSAANRSRMSSFGVGSVLCLCIVLGLFV 112
            +YSFEQKIRRR RR V+RAEGPSPS+AN SR SSFGVGS+LCLC V GLF+
Sbjct: 123 NQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

BLAST of Lag0002492 vs. NCBI nr
Match: KAG6575858.1 (hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 0

Query: 1   MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQTADHRQVAENKNG 60
           MA IKSL+SIAL++LLL+SE    SAA HG A S  LAG+  R+ LQTA+  QVAEN  G
Sbjct: 1   MAPIKSLISIALLALLLLSEHLPISAADHGVAPS-PLAGVFRRDTLQTAERHQVAENGIG 60

Query: 61  -EYSFEQKIRRRPRRPVKRAEGPSPSAANRSRMSSFGVGSVLCLC 105
            +YSFEQKIRRR RR V+RAEGPSPS+AN SR SSFG+GS+LCLC
Sbjct: 61  YQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGIGSLLCLC 104

BLAST of Lag0002492 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 68/113 (60.18%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 1   MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQ-TADHRQVAENKN 60
           MA+IK+LLSIAL++LLL  ES  TSAAVH GA S SLAGI+ RNI+Q TADH QVAE K 
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGA-STSLAGILRRNIVQTTADHHQVAEKK- 60

Query: 61  GEYSFEQKIRRRPR-RPVKRAEGPSPSAANRSRMSSFGVGSVLCLCIVLGLFV 112
               F   I+RR R RPV     P  SAANRSR +  GVGS+LC+ ++LGLF+
Sbjct: 61  ----FNVHIKRRMRMRPVLIGR-PKTSAANRSREAFCGVGSMLCIFVLLGLFL 106

BLAST of Lag0002492 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 61/114 (53.51%), Postives = 82/114 (71.93%), Query Frame = 0

Query: 1   MASIKSLLSIALVSLLLISESPATSAAVHGGAYSNSLAGIIHRNILQTADHRQVAENKNG 60
           MA++KSL+S+AL++LLL SES  T++AV     SNSL G++ RN+LQTA H Q+A+N + 
Sbjct: 1   MAALKSLVSVALLALLLFSES-LTASAVDRSGDSNSLTGMLRRNVLQTAAH-QIADN-SV 60

Query: 61  EYSFEQKIR---RRPRRPVKRAEGPSPSAANRSRMSSFGVGSVLCLCIVLGLFV 112
           E S E+K+    +R  RPV  A G   SAANRSR++S GVGSVL   +VLGLF+
Sbjct: 61  ESSPERKMNVHIKRRMRPV--ATGTRSSAANRSRIASIGVGSVL---VVLGLFL 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954099.15.7e-2366.07uncharacterized protein LOC111456466 [Cucurbita moschata][more]
XP_022992473.17.5e-2366.07uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima][more]
KAG6575858.12.8e-2267.62hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593163.13.4e-1560.18hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575859.13.9e-1153.51hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002492.1Lag0002492.1mRNA