Lag0002489 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002489
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein no-on-transient A-like
Locationchr4: 43324776 .. 43325099 (-)
RNA-Seq ExpressionLag0002489
SyntenyLag0002489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGATCAAATTCCTAGTTTCGCTAGCTCTTGTCGTTCTTCTCTTGTTCTCTGAGTCTCCAGCCGCTTCTGCCGCCGCTTCGAATTCTCTTACCGGAATGTTTCGCCGGGACGTCCTTCAGGCGGCGGCTCATAAGATTGCAGATAACAGTGTCGAGTCCTCTGTTGGACGGAAGATGAATGTTCATATCAAAAGGCGGATCCGAGCGGGACTAACCGGTGGCCACCACAGATCGGCGGCGAATCGGAACCGAGGCGCGTCCTTTGGCGTTGGATTGCTTTGTATCTGCATTTTTTGGGGGATTGTTCTTGATCTGTAA

mRNA sequence

ATGGCTGCGATCAAATTCCTAGTTTCGCTAGCTCTTGTCGTTCTTCTCTTGTTCTCTGAGTCTCCAGCCGCTTCTGCCGCCGCTTCGAATTCTCTTACCGGAATGTTTCGCCGGGACGTCCTTCAGGCGGCGGCTCATAAGATTGCAGATAACAGTGTCGAGTCCTCTGTTGGACGGAAGATGAATGTTCATATCAAAAGGCGGATCCGAGCGGGACTAACCGGTGGCCACCACAGATCGGCGGCGAATCGGAACCGAGGCGCGTCCTTTGGCGTTGGATTGCTTTGTATCTGCATTTTTTGGGGGATTGTTCTTGATCTGTAA

Coding sequence (CDS)

ATGGCTGCGATCAAATTCCTAGTTTCGCTAGCTCTTGTCGTTCTTCTCTTGTTCTCTGAGTCTCCAGCCGCTTCTGCCGCCGCTTCGAATTCTCTTACCGGAATGTTTCGCCGGGACGTCCTTCAGGCGGCGGCTCATAAGATTGCAGATAACAGTGTCGAGTCCTCTGTTGGACGGAAGATGAATGTTCATATCAAAAGGCGGATCCGAGCGGGACTAACCGGTGGCCACCACAGATCGGCGGCGAATCGGAACCGAGGCGCGTCCTTTGGCGTTGGATTGCTTTGTATCTGCATTTTTTGGGGGATTGTTCTTGATCTGTAA

Protein sequence

MAAIKFLVSLALVVLLLFSESPAASAAASNSLTGMFRRDVLQAAAHKIADNSVESSVGRKMNVHIKRRIRAGLTGGHHRSAANRNRGASFGVGLLCICIFWGIVLDL
Homology
BLAST of Lag0002489 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 0

Query: 1   MAAIKFLVSLALVVLLLFSESPAASA----AASNSLTGMFRRDVLQAAAHKIADNSVESS 60
           MAA+K LVS+AL+ LLLFSES  ASA      SNSLTGM RR+VLQ AAH+IADNSVESS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  VGRKMNVHIKRRIRAGLTGGHHRSAANRNRGASFGVGLLCICI 100
             RKMNVHIKRR+R   T G   SAANR+R AS GVG + + +
Sbjct: 61  PERKMNVHIKRRMRPVAT-GTRSSAANRSRIASIGVGSVLVVL 102

BLAST of Lag0002489 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-13
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 1   MAAIKFLVSLALVVLLLFSESPAASAAASNSLTGMFRRDVLQAAAHKIADNSVESSVGRK 60
           MAAI+ LVS+AL+ LL FSE    S   S+SLTG+  R++L   AH+I + SVESS  RK
Sbjct: 1   MAAIRPLVSIALLALLFFSE----SLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRK 60

Query: 61  MN-VHIK--RRIR----AGLTGGHHRSAANRNRGASFGVG-LLCICIFWGIVL 106
            N +H K  RRIR    +G  G HH+SA NR+R ASF VG +LCICIF G+ L
Sbjct: 61  SNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

BLAST of Lag0002489 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MAAIKFLVSLALVVLLLFSESPAASAA----ASNSLTGMFRRDVLQAAAHKIADNSVESS 60
           MAAIK L+ ++L+ LL FSES + SAA    ASNS+TGM RR+VLQ A H+IAD+     
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSE---- 60

Query: 61  VGRKMNVHIKR----RIRAGLTG----GHHRSAANRNRGASFGVGLL 96
              KMNVHIKR    RIR    G    G+ +SAA+R++ ASFG+G L
Sbjct: 61  --GKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFL 101

BLAST of Lag0002489 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 1   MAAIKFLVSLALVVLLLFSESPAASAA----ASNSLTGMFRRDVLQAAAHKIADNSVESS 60
           MAAIK L+S++L+ LL FSES + SAA    ASNS+T M RR++LQ A H+IAD+     
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSE---- 60

Query: 61  VGRKMNVHIK-------RRIRAGLTGGHHRSAANRNRGASFGVGLLCICIFWGIVL 106
              KMNV IK       R I AG   G   SAANR+R  SFG+G L    F+G+VL
Sbjct: 61  --GKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFL--LFFFGLVL 108

BLAST of Lag0002489 vs. NCBI nr
Match: XP_008451651.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 1  MAAIKFLVSLALVVLLLFSESPAASAAASNSLTGMFRRDVLQAAAHKIADNSVESSVGRK 60
          MAAI+ LVS+AL+ LL FSE    S   S+SLTG+  R++L   AH+I + SVESS  RK
Sbjct: 1  MAAIRPLVSIALLALLFFSE----SLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRK 60

Query: 61 MN-VHIK--RRIR----AGLTGGHHRSAANRNRGASF 91
           N +H K  RRIR    +G  G HH+SA NR+R ASF
Sbjct: 61 SNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASF 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575859.12.4e-1865.05hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0046715.16.8e-1353.98E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3... [more]
KAA0068047.13.1e-1052.34protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
KGN44886.14.1e-1050.00hypothetical protein Csa_015765 [Cucumis sativus][more]
XP_008451651.12.3e-0852.58PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002489.1Lag0002489.1mRNA