Lag0002481 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002481
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	classical arabinogalactan protein 26
Location	chr4: 43240730 .. 43241140 (+)
RNA-Seq Expression	Lag0002481
Synteny	Lag0002481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCCTCGCCGTCGCCGTCGCCGTCGTCGGACATTTTTCCGCTCTTTCCATCGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCGGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAGCTCCGGTTGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCTGAGCTCTGCCGGTGA

mRNA sequence

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCCTCGCCGTCGCCGTCGCCGTCGTCGGACATTTTTCCGCTCTTTCCATCGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCGGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAGCTCCGGTTGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCTGAGCTCTGCCGGTGA

Coding sequence (CDS)

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCCTCGCCGTCGCCGTCGCCGTCGTCGGACATTTTTCCGCTCTTTCCATCGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCGGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAGCTCCGGTTGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCTGAGCTCTGCCGGTGA

Protein sequence

MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPSSDIFPLFPSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWCWPVLVALTAVSFAAELCR

Homology

[Close]

BLAST of Lag0002481 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 3.3e-49
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPSSDIFPLF 60
           MAS+FSLYIPIFMAYTASIFPFSFASYPN+FPPL+SSISAAPEFSPSPSPSP+SDI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWCWP 120
           P+PGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSA A L+SG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 137
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Lag0002481 vs. NCBI nr
Match: KAG6575865.1 (hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.5 bits (519), Expect = 5.7e-49
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPSSDIFPLF 60
           MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP+SDI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWCWP 120
           P+PGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSAAA L+SG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 137
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Lag0002481 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 5.7e-49
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPSSDIFPLF 60
           MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP+SDI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWCWP 120
           P+PGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSAAA L+SG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 137
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Lag0002481 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPSSDIFPLF 60
           MAS+FSLYIPIFMAYTASIF FSFASYPN+FPPL+SSISAAPEFSPSPSPSP+SDI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWCWP 120
           P+PGGA L PSSLPTIPSSPSPPNPD   A PAPE+PLPPSQSLPFSAAA L+SG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 137
           + VALTA +   E+CR
Sbjct: 121 IWVALTA-AIVEEVCR 135

[Close]

BLAST of Lag0002481 vs. NCBI nr
Match: XP_038876736.1 (classical arabinogalactan protein 26-like [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-44
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFS--PSPSPSPSSDIFP 60
           MAS+FSLYIPIFMAYTASI PFS ASYPNY P L+SSISAAPEFS  PSPSPSP+SDI P
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSLASYPNYSPTLISSISAAPEFSPFPSPSPSPASDISP 60

Query: 61  LFPSPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLSSGWWC 120
           LFP+PGGA L PSSLPTIPSSPSPPNPD   AAPAPE+ LPPSQSLPFSAA  L+   WC
Sbjct: 61  LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMSLPPSQSLPFSAAVSLNFDGWC 120

Query: 121 WPVLVALTAVSFAAELCR 137
           WPVLVALT  + A ELCR
Sbjct: 121 WPVLVALT-TALAVELCR 137

[Close]

BLAST of Lag0002481 vs. ExPASy Swiss-Prot
Match: Q94F57 (Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 35  LSSISAAPEFSP-------SPSPSPSSDIFPLFPSPGGAALTPSS-----LPTIPSSPSP 94
           LS+ISAAP F P       + +P+ S D  PLFP+PG + ++PS      +PTIPSS SP
Sbjct: 25  LSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSP 84

Query: 95  PNPDSTVAAPAPEL-----PLPPSQSL 105
           PNPD+    P  E+     PLP S S+
Sbjct: 85  PNPDAVTPDPLLEVSPVGSPLPASSSV 111

The following BLAST results are available for this feature:

BLAST of Lag0002481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548939.1	3.3e-49	82.35	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575865.1	5.7e-49	82.35	hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953817.1	5.7e-49	82.35	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]
XP_022991733.1	1.1e-47	80.88	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_038876736.1	2.5e-44	78.99	classical arabinogalactan protein 26-like [Benincasa hispida]	[more]

BLAST of Lag0002481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F57	1.5e-04	44.83	Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..96
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002481.1	Lag0002481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane