Lag0002476 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002476
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	U1 small nuclear ribonucleoprotein C
Location	chr4: 43209721 .. 43212417 (+)
RNA-Seq Expression	Lag0002476
Synteny	Lag0002476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGGTGCGTTCTTCTATCTCCATTTTCTTCTAAGCTTCATTGTTTTATCCTTCAATCAAATTTTCATCTCTCTCTCTTTCTATTTATTTCTACAGTTAGTGATGTGATCTTGTTGTATATATGCAGGTATTATTGTGACTATTGTGACACATATCTGACCCATGATTCTGTAAGTCCTGTCCTTGCGTTCAGATTGCAATGCCATTTCCTTTCCGTTTGATCATCAACCACTTGATTTTTTTCCCCTTTTTGGGGATGTTGTAGTTCTCTGTCTTTGTGATGGGGAATGTTTTGCGATTTAATTTTAATGGACCTATCAGTCGCTCGAAGAAATTGTAGTAAAGTTTTGGATTGATAAGACTTTGGTTGGTATTGGGGTTGGATTGAATTCTTATATTTATTTTCAATGGATCAAATCGACTGTCTGTAGTTTGTATTTTTTAATTACTATTTTTTATGAATTCTGGATTTCAGTGTTCATGATGTTGAGTGTATGCAGATTGGTTTGTGTGTTTTTTTACGAGAAGCAAGATCCTTTTGTTGGCAATTGAGAAGTTTCAATATTAGGACTCCTTTTTAGAGTAGAAACTACTAAACTCAAAACCGAAACTAAAAGTTACGGGCAATGTGAGCAAATGATAAGAAGACTTCCCAACTAGAATTAATCTTAAAAAAAAGTAATTATGAAAAGATTTAGAGAGAGCACTCCAAGAAGCTGTATGATTCTTATCAAAGTGCTCATCTCTCTCTTATTTTAAGCTTATGATTTCTTTCTGACCAAATACCCTAAAACATGGAACTACCATGGGTTGGCTGGCATAGTGGTAATTGAGGCCAATAAAGAAAATAAGTGGACTTAGAAGGAATAGGTTCAAACTATGGTGACCACCTACTTCTACAAAGTGTGCAGAAGCAGGCTGGGACAATCACAGATATCCCCTAAAAAAACCTTTAACCATGGCTTGAACAATGGAAACACATAAAACTCATGGTCTCAAACTGAATATGCTAAGCCTCTAGTTTCTTTCAAACTGAGATTGGTTTGTACAATCTTTAATTGTTTATCTCAATTGTACTTGATTCTTATGTTCTGAACACATTTATCTTTAGTGCCTAGTTTTTTTTTTCCTCCTGTTTCAGTTTGGTGTCTTTTTTTTTTTTTTGGAGGGTTGGATGGGGTGGGGTGGATATTGATTTAGTAGCTTCAGGTTTTTGGATCTGTATATCATTTACATCGAGTTAGTGTATGTCTGAAATTGCTCATATTTAGTTTTTGTGGTATTTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATTTTAATCTTGTCCGCATCTCAATTTAGCGTAGAATTCCCTATTATGAGGTTGAACTCTTGGGGCCAGTTTAGAAATTGAATTGAATTGTAGTTTTATGTTTTTAAAAACAAAGCCACTTTCAGACTTAAAAAACTCGGTTGGTTACTCAGTTATAGTTCTAGAAACACTTCTATAGGGGAAAAAGTAGATGTAATATTTTATAGTTTTTTAGAATTTTATTTCTGTTTACTGAAATATGGTAAAGATCACAATTAGTATCTCAAAGTGTATTGTAATTGTAACTTTCATATCTTTAAATAGAAAGAAAATTTTTAAAGAAATGTGGAAATGTTAAAGCACATTTCCATTCATACATCCAAAAGAACTTAAAAAAAATTTGAGATAATTTCTTCTCAAAAATGAACAGCAGACTCTTAATTCCTGATTTTTGGATGCACTGCAGGCAAATGTGCGATCATACTATCAGCAGTTTGAGGAGCAACAGACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTTATGCCAGGAGCCCCGGGGTTAGTACCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAGTTCCTGGTGCTCCAGGTAAAATTCACAGATTTGATAACTTTTTTTATTTAAATGAATATCCCTTTGGCTTTGATTGTGTTATTTCACAATCTCATTTCGAACTAAAGCCACCTTGTTATGCTTTTTGATCGGTAAAATCTAATAGTCAAAGTAATATGCAGCTTGAATATTGGACATAATTCTTTAGACATAATAAACGCCCAAGTACAATTTGACACATCTCTGTCTGGTTAAAATTATTTGCATTAGTACAGAAATTTTTTTTATTTGAATAAATGCCCAACAAATCAACCAAACCGATTCATGTTAGTCGGTATGATTGGTTCGTTTGATTTCACCTTGGCCTCCTGGTCCTTTCTGAATAGAATTAGATGTAACCAATGCAGTAGGTATTGTATACTGTATCAAATTGATCGAACTCTTCTCGTTAATGTAGGATATCTACCTGCTCCTACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCTATGCCCGGCCAAGTGAACATTCCTGCCAGGCCTCCTCCTCCAGCTCCAATTCCAGGGAGTGCGCCGCAGCCTTCTTCGACCAACGGTGCACCATTAGCTGCACCGTCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATACTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAG

mRNA sequence

ATGCCTCGGTATTATTGTGACTATTGTGACACATATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAGTTTGAGGAGCAACAGACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTTATGCCAGGAGCCCCGGGGTTAGTACCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAGTTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCTATGCCCGGCCAAGTGAACATTCCTGCCAGGCCTCCTCCTCCAGCTCCAATTCCAGGGAGTGCGCCGCAGCCTTCTTCGACCAACGGTGCACCATTAGCTGCACCGTCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATACTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAG

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGTGACACATATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAGTTTGAGGAGCAACAGACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTTATGCCAGGAGCCCCGGGGTTAGTACCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAGTTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCTATGCCCGGCCAAGTGAACATTCCTGCCAGGCCTCCTCCTCCAGCTCCAATTCCAGGGAGTGCGCCGCAGCCTTCTTCGACCAACGGTGCACCATTAGCTGCACCGTCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATACTTTCACCACCATGGCTCAACCTTCTGAGTCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAPGLVPGIRPPVLPRPVPGAPGYLPAPTMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSGGYDTFTTMAQPSESNH

Homology

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BLAST of Lag0002476 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 189/196 (96.43%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGL+PGIRPPVLPRPVPGAPGYLPAP
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAPMPGQVNIPARPPPPAP+PGSAPQPSSTNGAPLA PSMYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180

Query: 181 GYDTFTTMAQPSESNH 196
           GY++FTTMAQPSE NH
Sbjct: 181 GYESFTTMAQPSEPNH 196

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BLAST of Lag0002476 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 3.4e-95
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGL+PGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLAAPS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQP-SESNH 196
           GYD+FT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

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BLAST of Lag0002476 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGL+PGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQP-SESNH 196
           GYD+FT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

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BLAST of Lag0002476 vs. NCBI nr
Match: KAG6593155.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 182/195 (93.33%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP-GAPGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP G PGL+PGIRPPV PRPVPGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAPIPGS PQPSSTNGAPL AP  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQPSESN 195
           GYD+FTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

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BLAST of Lag0002476 vs. NCBI nr
Match: XP_023004664.1 (U1 small nuclear ribonucleoprotein C [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 182/195 (93.33%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP-GAPGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP GAPGL+PGIRPPV PRPVPGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAPIPGS  QPSSTNGAPL AP  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQPSESN 195
           GYD+FTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

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BLAST of Lag0002476 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-67
Identity = 151/215 (70.23%), Postives = 162/215 (75.35%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGAPG--------LVPGIRPPVLPR 120
            AAFQQVGAAYNQHL+       RPRLPVLPTP MP A          LVPG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PVPGAPGYLPAPTMPPMMAPPGA---PMPGQVNIPARPP----PPAPIPGSAPQPSSTNG 180
           PVPGAPGY+PAP MP MMAPPGA   PMP   ++P RPP    PPA +PGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAAPSMYQANPAAPGSGGYDTFTTMAQPSESNH 196
             +    MYQANPA P SGG+D+F   AQ  E+NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

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BLAST of Lag0002476 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 137/230 (59.57%), Postives = 151/230 (65.65%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMP-GAP--GLVPGIRPPVLPRP---- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP G P   L+PG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 VPGAPGYLPAPTMPP-MMAPPGAPMPGQVNIPARPP-------PPAPIPGSAPQPSS-TN 180
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GAPL----AAPSMYQANPAAPG---SGGYDTFTTMAQ-------PSESNH 196
           GAP+    A P++YQANP AP    SG      T  Q       PSE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

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BLAST of Lag0002476 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-49
Identity = 123/196 (62.76%), Postives = 137/196 (69.90%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAPGLVP-GIRPPVLPRPVPGAPGYLPAP 120
              +QQVGA +NQH+L  RPR P++    +P  PG +P G+RPPVLPRP+    GY+P P
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM----LP--PGSMPMGMRPPVLPRPMMPPQGYMPPP 120

Query: 121 TMPPMMAPPGAPM-PGQVNIPARPPPPAPIPGS-------APQPSSTNGAP-----LAAP 180
            +P MMAPPGAP+ P   N   RPP  APIPG        AP P    G P     L  P
Sbjct: 121 GVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPP 180

Query: 181 SMYQANPAAPGSGGYD 183
             Y  NPAAP SG ++
Sbjct: 181 PPYHTNPAAPPSGNFN 189

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BLAST of Lag0002476 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.8e-49
Identity = 136/239 (56.90%), Postives = 148/239 (61.92%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVM-------PGAPGLVPGIRPPVLPRP 120
           AAAF Q GA +NQH+L       RPRLP+LPTP M       PGAP L+PG+RPP+L  P
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAP-LMPGVRPPIL--P 120

Query: 121 VPGAPGYLPAPTMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAP--------------- 180
            PG PGY   P  PP M  PGAP PG +  P  PP   P PG+ P               
Sbjct: 121 APGIPGY---PGGPPTMLQPGAP-PGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPT 180

Query: 181 QPSSTNGAP-------LAAPSMYQANPAAPG---SGGYDTFTT-------MAQPSESNH 196
            P  T+G P        A P++YQ NP AP    SG      T        AQPSE NH
Sbjct: 181 LPPPTSGVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

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BLAST of Lag0002476 vs. ExPASy Swiss-Prot
Match: P90815 (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans OX=6239 GN=F08B4.7 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-21
Identity = 69/144 (47.92%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ       +
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ-----TAR 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAPGLVPGIRPPVLPRPVPG-APGYLPAP 120
           A A  ++  A  +  +G  P  PV   P+M G PG+     P + PRP PG   G+  AP
Sbjct: 61  AFATNRMQGAVPRTTMGMAPVPPVGHHPMMGGPPGM-----PMMAPRPFPGPGVGFPGAP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPP 144
            MPP    PG PM G    P  PP
Sbjct: 121 GMPPF---PGGPM-GMAGPPGMPP 130

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BLAST of Lag0002476 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGL+PGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLAAPS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQP-SESNH 196
           GYD+FT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]

BLAST of Lag0002476 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGL+PGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQP-SESNH 196
           GYD+FT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]

BLAST of Lag0002476 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-APGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PG APGL+PGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAPIPGSAPQPSSTNGAPLAAPS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQP-SESNH 196
           GYD+FT+MAQP SESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]

BLAST of Lag0002476 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 182/195 (93.33%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP-GAPGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP GAPGL+PGIRPPV PRPVPGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAPIPGS  QPSSTNGAPL AP  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQPSESN 195
           GYD+FTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]

BLAST of Lag0002476 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.6e-93
Identity = 181/195 (92.82%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP-GAPGLVPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMP GAPGL+PGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPIPGSAPQPSSTNGAPLAAPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAPIPGS PQ SSTNGAPL AP  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDTFTTMAQPSESN 195
           GYD+FTTMAQPSESN
Sbjct: 181 GYDSFTTMAQPSESN 195

The following BLAST results are available for this feature:

BLAST of Lag0002476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899936.1	4.3e-98	96.43	U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida]	[more]
XP_004148886.1	3.4e-95	93.91	U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ...	[more]
XP_008451425.1	5.8e-95	93.91	PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ...	[more]
KAG6593155.1	1.4e-93	93.33	U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023004664.1	5.4e-93	93.33	U1 small nuclear ribonucleoprotein C [Cucurbita maxima]	[more]

BLAST of Lag0002476 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F6HQ26	6.9e-67	70.23	U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0...	[more]
C5XYW4	1.7e-49	59.57	U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260...	[more]
Q56XE4	2.9e-49	62.76	U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312...	[more]
C5XZK6	3.8e-49	56.90	U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880...	[more]
P90815	5.7e-21	47.92	U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans OX=6239 GN=F08B4....	[more]

BLAST of Lag0002476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K515	1.6e-95	93.91	U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ...	[more]
A0A5A7UNW2	2.8e-95	93.91	U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BS92	2.8e-95	93.91	U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=...	[more]
A0A6J1KWY5	2.6e-93	93.33	U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890...	[more]
A0A6J1H7P8	7.6e-93	92.82	U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 1..37 e-value: 1.4E-12 score: 57.8
IPR017340	U1 small nuclear ribonucleoprotein C	PIRSF	PIRSF037969	U1-C	coord: 1..194 e-value: 1.2E-39 score: 135.3
IPR017340	U1 small nuclear ribonucleoprotein C	PANTHER	PTHR31148	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 1..179
IPR017340	U1 small nuclear ribonucleoprotein C	HAMAP	MF_03153	U1_C	coord: 1..168 score: 11.832741
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 1..38 e-value: 5.3E-22 score: 77.3
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..61 e-value: 4.4E-30 score: 105.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR31148:SF2	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 1..179
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 4..36 score: 12.522273
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002476.1	Lag0002476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000395	mRNA 5'-splice site recognition
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0030627	pre-mRNA 5'-splice site binding
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding