Lag0002469 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002469
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SOSS complex subunit B homolog
Location	chr4: 43155586 .. 43156035 (-)
RNA-Seq Expression	Lag0002469
Synteny	Lag0002469

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTTTGTTAGAGGCAATAAAGAAGAAGCAAATGATATCTCTCAAGGACTTGGTGCCAGCAGCACAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGGGAAGACAACAGTTGATGGACAAAACAAGGCATGTCTATCGTTGGTGGCCGACGAAACAGCTGCAGTTCACTTCCAGCTATGGGGAGATGAGTGTGACATGGTCGAGCCAAGCGACATTATCCGGTTGACGAATGGGATATTCTCCTACAGTCGAAACAACCTAGTCCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGGGAGTTCAACATGGTGTTTGTAGAGACGCCAAATATGAGCGAGATCCATTGGGTTCCCGACACGACTGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACCGAACCTTTGA

mRNA sequence

ATGGCTTGTTTGTTAGAGGCAATAAAGAAGAAGCAAATGATATCTCTCAAGGACTTGGTGCCAGCAGCACAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGGGAAGACAACAGTTGATGGACAAAACAAGGCATGTCTATCGTTGGTGGCCGACGAAACAGCTGCAGTTCACTTCCAGCTATGGGGAGATGAGTGTGACATGGTCGAGCCAAGCGACATTATCCGGTTGACGAATGGGATATTCTCCTACAGTCGAAACAACCTAGTCCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGGGAGTTCAACATGGTGTTTGTAGAGACGCCAAATATGAGCGAGATCCATTGGGTTCCCGACACGACTGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACCGAACCTTTGA

Coding sequence (CDS)

ATGGCTTGTTTGTTAGAGGCAATAAAGAAGAAGCAAATGATATCTCTCAAGGACTTGGTGCCAGCAGCACAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGGGAAGACAACAGTTGATGGACAAAACAAGGCATGTCTATCGTTGGTGGCCGACGAAACAGCTGCAGTTCACTTCCAGCTATGGGGAGATGAGTGTGACATGGTCGAGCCAAGCGACATTATCCGGTTGACGAATGGGATATTCTCCTACAGTCGAAACAACCTAGTCCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGGGAGTTCAACATGGTGTTTGTAGAGACGCCAAATATGAGCGAGATCCATTGGGTTCCCGACACGACTGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACCGAACCTTTGA

Protein sequence

MACLLEAIKKKQMISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNL

Homology

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BLAST of Lag0002469 vs. NCBI nr
Match: XP_022150258.1 (SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150260.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150261.1 SOSS complex subunit B homolog [Momordica charantia])

HSP 1 Score: 268.1 bits (684), Expect = 4.6e-68
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           MISLKDLVPAAQNNVNAQFIVLDKGKTT +GQNKACLSLVADETAAVHFQLWGDECD VE
Sbjct: 1   MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVE 60

Query: 73  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKKY 132
           PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI WVPDT DSKKY
Sbjct: 61  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIRWVPDTIDSKKY 120

Query: 133 VKESVLSPYSRIFPPN 149
           VKESVLSPYSRIFPPN
Sbjct: 121 VKESVLSPYSRIFPPN 136

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BLAST of Lag0002469 vs. NCBI nr
Match: XP_023515959.1 (SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           MISLKDLVPAAQNNVN QFIVLDKG TT++GQNK C SLVADETAAVHFQLWG+ECD+VE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 73  PSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 132
           PSDI+RLTNGIFSYSR NNLVLRAGKRGK+EKVGEFNMVFVETPNMSEIHWVPDTT+SKK
Sbjct: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121

Query: 133 YVKESVLSPYSRIFPP 148
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

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BLAST of Lag0002469 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           MISLKDLVPAAQNNVN QFIVL+KG TT++GQNK C SLVADETAAVHFQLWG+ECD+VE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 73  PSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 132
           PSDI+RLTNGIFSYSRN NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTT+SKK
Sbjct: 62  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121

Query: 133 YVKESVLSPYSRIFPP 148
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

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BLAST of Lag0002469 vs. NCBI nr
Match: XP_022968811.1 (SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968812.1 SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968813.1 SOSS complex subunit B homolog [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 7.6e-63
Identity = 122/136 (89.71%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           MISLKDLVPAAQNNVN QFIVL+KG TT+DGQNK C SLVADETAAVHFQLWG+ECD+VE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 73  PSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 132
           PSDI+RL NGIFSYSR NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDT++SKK
Sbjct: 62  PSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSKK 121

Query: 133 YVKESVLSPYSRIFPP 148
           YVKESV+SPYSRIFPP
Sbjct: 122 YVKESVVSPYSRIFPP 137

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BLAST of Lag0002469 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 123/136 (90.44%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           MI+LKDLVPAAQNNVN QFIVL+KG T ++GQNKAC SLVADETAAVHFQLWGDECD+VE
Sbjct: 2   MIALKDLVPAAQNNVNTQFIVLEKGMTIMEGQNKACQSLVADETAAVHFQLWGDECDVVE 61

Query: 73  PSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 132
           PSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDTT+S K
Sbjct: 62  PSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNK 121

Query: 133 YVKESVLSPYSRIFPP 148
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

[Close]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 13  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVE 72
           +I + ++ P ++ N+N  FIVLDKG  T   +      LVAD TA+++  +W    + ++
Sbjct: 3   LIKVNEIKPYSK-NINCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQIQ 62

Query: 73  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHW--VPDTTDSK 132
           P DI+RL  G  +     L L  GK G IEK+GEF   FVE PN+S   W    D  + K
Sbjct: 63  PGDILRLKGGYSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNPK 122

Query: 133 KYVKESVLSPYSRIFP 147
             V     SP+ +  P
Sbjct: 123 NMVATPKPSPHKQQQP 137

[Close]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot
Match: Q9VM17 (SOSS complex subunit B homolog OS=Drosophila melanogaster OX=7227 GN=CG5181 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 12  QMISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSL-VADETAAVHFQLWGDECDM 71
           + I +KD+ P  + N+N  FIVL+ G  TV  +N+   +  V D TA ++  +W +   +
Sbjct: 5   ECIPIKDIKPGLK-NINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKL 64

Query: 72  VEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 120
           + P DI+RLT G  S  R+ L L +GK G++ K+GE+ MVF E+ NMSE
Sbjct: 65  IAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSE 112

[Close]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 16  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVE 75
           +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTC--KVADKTGSINISVWDDVGNLIQ 66

Query: 76  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 120
           P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 16  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVE 75
           +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTC--KVADKTGSINISVWDDVGNLIQ 66

Query: 76  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 120
           P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 16  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVE 75
           +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTC--KVADKTGSINISVWDDVGNLIQ 66

Query: 76  PSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 120
           P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

The following BLAST results are available for this feature:

BLAST of Lag0002469 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150258.1	4.6e-68	96.32	SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS comple...	[more]
XP_023515959.1	1.8e-64	91.18	SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022961520.1	6.9e-64	91.18	SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex...	[more]
XP_022968811.1	7.6e-63	89.71	SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968812.1 SOSS complex s...	[more]
XP_038878334.1	9.9e-63	90.44	SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ...	[more]

BLAST of Lag0002469 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54X41	2.8e-15	36.03	SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279...	[more]
Q9VM17	2.8e-15	40.37	SOSS complex subunit B homolog OS=Drosophila melanogaster OX=7227 GN=CG5181 PE=2...	[more]
A6QLK2	3.0e-14	41.12	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	3.0e-14	41.12	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]
Q8R2Y9	3.0e-14	41.12	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 11..120 e-value: 1.5E-25 score: 91.5
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 9..146
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 9..146
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002469.1	Lag0002469.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding