Lag0002420 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002420
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S19
Location	chr4: 42704590 .. 42707052 (+)
RNA-Seq Expression	Lag0002420
Synteny	Lag0002420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGGTGGGGGAATCGAACCATTGACCTCGTGGTTATCAATACATCTTTATGCCAGTTGAGCTATGCTCTTGTTGGCTATGCCCATGTTAACTTGAAAGTTTCCATTTGGTTCGTTTAGGTTTATGAATGTATCTAAATTATATTTTTTTGAATTGGAAAATCAATTTATTTTCTTCTATTTGTTACTTGATCCTAAATCCTACAAAACCAATACATGAAAAAAAAATGTCAATATATAATAATTATGGGGATGATTGATAAAATTTGACTAACCTATAATGACCAAATTAATAATTTTATTGTCAAAGTGAACACAACTCAATAACAATTATCATGTCTTCATGATCAAGTGGTTGAAGGTTCAAATTTTATGCTTCAAATGTTGTTGATCTAAAAATAAATTAAAATTAAAAATTTCTCAAAATACATGGACCATGACCAACTCTGTAATTTTTTTTTTTTTTTTGAAAAGACCAACTCTGTAATTTTATCATATTATTTCCATACCCGAAGTTTCTTAAAAAAAAGGGGGTTTATTTAAAAAAAAAAAATGGCGTGAAGGGGCAATTTCGGAAATTAAAAAAACGCAGAGGGTACAATTGGAAATATCAGTATCTAACAGGTTAAGGCGAGAAATTTCCGAATATAAATAAAGGGCACTTATCACTCTTCGAAAACCCTAGAGCTTGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTATCCATTTTGTTCATCTTTTTTCTGTTTTGGTGGCTGAGAGAACGTGATTTTCGATCGAAGAGAGTATTGTAGGATGTCGATTTTGAGAACGGAGTGAATGCTATATTTGTTCAAACGTTTCCGGTTCTGTTGTGTAGTGTGCTCGATTCTGCATTGTTTTCCCGGCCTCCATTCTACCAATATTTTTTTTACCCATATCAATCGAACAAGCAGTTTGCTAGTTTTAGGCCGTCGACGTGCCGACTGACCTGTTTCTGATTATTAATTATATATATTTTTTTGTTTAAACCTTAATGGGTTGTTAAATTACCTGCTCGTGCTTTAAGCATGTCTCTTCTGTTGATTCAGCTTGTCGGTTGGGTACTGTCTTCTCCTGTTTTTTCTGGTCCTTGCCCTTCATAAGAGAAATCGTTATTATTATTATTTTGTATTTTCTTGCACTTATACTTGCCCTTGACTGTTTCTGGGATCTTATACATTCTGTAGACACGTTTTCAGTGTAAGGAATTCTTTAATTTTCAACAGAGCTATTATTTTTCTGGGATTTAATTAGTCTAAATGATTTTTTGGCCATGAGGAAAATTTTCTTGTAATTATATATTATTCGGGGTTTGGCTTTTCGCCCGCTGTTCTAATATTCCATACTACCAGCGAATGTTTTCCCATTACAAAAGGAATATTTTAGAAGGTTTTTCCGATACCTCCCTGGTTTTGATCATCAGTTTTCTTGATCATGACTTTAGTATCCGTACTGTTCTTGAATTTTGATTGGTTAGAACTTTCTACACTACATGTTCCTTGTTCACTAATAAGTAATAACTAATTAGTTTAACCTTGATTATCTATAACTTTTTTTTATCATCAAATCAATTATGATCTTAACTTATTTGGTTTTTAATTTATTCTCTGTGTAAATCATTGGCGAGCAGGTTGAACTTCCACCATGGACGGATATTGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGGTTAGTCCCCTCTTTTCTTCTTTTGACTTCTCTGTATTCATATAAAATGAACAAAACCAACTTAATTAATTGCTTCCGTTATGTATGTTCTGTTTGTGTTATTTTTATGATTGCCTTTTCAAACTTATTCAGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGGAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTGTCGATGTTGACCCAAAGGGGTGAGTACTAGCTTCTTATAGTTAGCTTAGTCATCATTATAACTTCTCAATTTCCTCAAATTAAATCTGATTTCTATTTCAACCATGAACAATTGTATTCAATGCAACCCCACTTGTGCTTGTGTTTTATGCTGCTTTCAAATCATTTATTACAACATTGTTATTATCTATTGATGTTGTTTTTTATATCTGGATGGGTTTGCAGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGA

mRNA sequence

ATGTGGGGGTGGGGGAATCGAACCATTGACCTCGTGGTTATCAATACATCTTTATGCCAGTTGAGCTATGCTCTTGTTGGCTATGCCCATGGCACTTATCACTCTTCGAAAACCCTAGAGCTTGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATATTGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGGAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTGTCGATGTTGACCCAAAGGGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGA

Coding sequence (CDS)

ATGTGGGGGTGGGGGAATCGAACCATTGACCTCGTGGTTATCAATACATCTTTATGCCAGTTGAGCTATGCTCTTGTTGGCTATGCCCATGGCACTTATCACTCTTCGAAAACCCTAGAGCTTGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATATTGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGGAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTGTCGATGTTGACCCAAAGGGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGA

Protein sequence

MWGWGNRTIDLVVINTSLCQLSYALVGYAHGTYHSSKTLELEKGGNPSSAIGAFAGLCSLNSTAMATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Homology

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BLAST of Lag0002420 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 33  YHSSKTLELEKGGNPSSAIGAFAGLCSLNSTAMATARTVKDVSPHEFVKAYAAHLKRSGK 92
           Y SSKTLE EKGG+PSSAIGAFAGLCSLNSTAMATARTVKDVSPHEFVKAYAAHLKRSGK
Sbjct: 510 YQSSKTLEFEKGGSPSSAIGAFAGLCSLNSTAMATARTVKDVSPHEFVKAYAAHLKRSGK 569

Query: 93  VELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGS 152
           VELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGS
Sbjct: 570 VELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGS 629

Query: 153 RPPHFCESSGAIARHILQQLQEMSIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP 208
           RPPHFCESSGAIARHILQQLQEM+IVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Sbjct: 630 RPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP 684

[Close]

BLAST of Lag0002420 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

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BLAST of Lag0002420 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 7.1e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-74
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. NCBI nr
Match: KAG6578553.1 (40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 64  AMATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAA 123
           +MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAA
Sbjct: 39  SMATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAA 98

Query: 124 SMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPK 183
           SMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPK
Sbjct: 99  SMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPK 158

Query: 184 GGRRITSSGRRDLDQVAGRIVVAP 208
           GGR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 159 GGRKITSSGRRDLDQVAGRIVVAP 182

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BLAST of Lag0002420 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.0e-68
Identity = 120/143 (83.92%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lag0002420 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.0e-68
Identity = 121/142 (85.21%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ M+IVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVA 207
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lag0002420 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-67
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MSIV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRI 204
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]

BLAST of Lag0002420 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.6e-64
Identity = 115/142 (80.99%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 64  AMATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAA 123
           A +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAA
Sbjct: 2   ADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAA 61

Query: 124 SMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPK 183
           S+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPK
Sbjct: 62  SIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPK 121

Query: 184 GGRRITSSGRRDLDQVAGRIVV 206
           GGR ITS GRRDLDQVAGR+ V
Sbjct: 122 GGRLITSQGRRDLDQVAGRVDV 143

[Close]

BLAST of Lag0002420 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45
Identity = 77/134 (57.46%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 70  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 129
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 130 YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKGGRRIT 189
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 190 SSGRRDLDQVAGRI 204
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]

BLAST of Lag0002420 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.6e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+IVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lag0002420 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-69
Identity = 120/143 (83.92%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVAP 208
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lag0002420 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-69
Identity = 121/142 (85.21%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ M+IVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRIVVA 207
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lag0002420 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-68
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 65  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 124
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 125 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIVDVDPKG 184
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MSIV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 185 GRRITSSGRRDLDQVAGRI 204
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:

BLAST of Lag0002420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593129.1	1.1e-91	97.71	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022954406.1	3.2e-75	99.30	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_022923365.1	7.1e-75	98.60	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]
XP_022938991.1	1.6e-74	97.90	40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p...	[more]
KAG6578553.1	1.6e-74	97.22	40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0002420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGA6	3.0e-68	83.92	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9FNP8	3.0e-68	85.21	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9LF30	1.5e-67	87.05	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	7.6e-64	80.99	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	1.6e-45	57.46	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of Lag0002420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTW8	1.5e-75	99.30	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	1.5e-75	99.30	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A6J1JTL0	3.4e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=...	[more]
A0A6J1EBL3	3.4e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P...	[more]
A0A6J1JX06	7.6e-75	97.90	40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=...	[more]

BLAST of Lag0002420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02080.1	2.1e-69	83.92	Ribosomal protein S19e family protein	[more]
AT5G61170.1	2.1e-69	85.21	Ribosomal protein S19e family protein	[more]
AT5G15520.1	1.1e-68	87.05	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 70..206 e-value: 1.4E-84 score: 297.0
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 70..204 e-value: 6.5E-56 score: 187.8
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 67..206
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 48..206 e-value: 3.7E-71 score: 240.1
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 67..206
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 154..173
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 70..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002420.1	Lag0002420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome