Lag0002407 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002407
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr4: 42576656 .. 42577573 (+)
RNA-Seq Expression	Lag0002407
Synteny	Lag0002407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCCAAGAGGGCCGTTGCACCATAGATAGTTGGGAAAGATTGAAACAGGAACTTCGTTCTCAGTTTTTCCCCGAGAATGTGGAAATTTTGGCGAGGCGGAAGTTGAGAGAGCTCAAGCATACAGGCAACATCCGAGATTACGTGAAACAGTTCTCCGGGTTAATGTTGGACATCCGCGATATGTCAGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGTTTGAAGCTGTGGGCGAAATCCAAACTTTATGAACAGCGGGTGCAAGACCTTTCTACTGCCTATGCAGCGGCAGAGCGGCTGTTCGACCTCAGTAATGACCAGTCCCAAGACGTGAGACGGAATCCGGGCCCTTCTAATGGAGGAAACAGAAATAACCGACCAGGCTCCCCCAAAAGTGGGGGAGGAGACAGACAAGGAGGGGGAGATCGTAGACCCTTCCAGAAGAGAGGCGGAAATTCGTGGCGAGGGCCACACCAACAGAACAACTACTATCAGAGGCCCCCTTTTTGTTTCATATGTAAGGGGGCCCATCAGGTGTCTGATTGCCCGGTGCGAGCAGCCCTCCAAGCTTTTCAAGCCACTTTTGACACTGATCCCGAAGTCGAAGCGGTAGCCGTAGAGACTGAGGGACCACAAGCTGAAGTTGAGAACAACCCCCGAATGGGGGCACTGAAATTCCTCTCTGCTCTCCAGAAGAAAGTGGGGGAGACCAAAGAACCATTAGAAAGAGGACTCATGTACGTTGATGCATGGGTGAATCACAAGTCGGCCAAGAGCACGATGGTCGACTCGGGAGCCACCCATAACTTTATGACTGAGACAGAAGCACGTCGGCTTAACTTGCACTGGGACAGAGACACAGACAAAATGAAAGCTGTCAATTCGGCAGCCTTACCCATTATGAGGCATTGA

mRNA sequence

ATGGACATCCAAGAGGGCCGTTGCACCATAGATAGTTGGGAAAGATTGAAACAGGAACTTCGTTCTCAGTTTTTCCCCGAGAATGTGGAAATTTTGGCGAGGCGGAAGTTGAGAGAGCTCAAGCATACAGGCAACATCCGAGATTACGTGAAACAGTTCTCCGGGTTAATGTTGGACATCCGCGATATGTCAGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGTTTGAAGCTGTGGGCGAAATCCAAACTTTATGAACAGCGGGTGCAAGACCTTTCTACTGCCTATGCAGCGGCAGAGCGGCTGTTCGACCTCAGTAATGACCAGTCCCAAGACGTGAGACGGAATCCGGGCCCTTCTAATGGAGGAAACAGAAATAACCGACCAGGCTCCCCCAAAAGTGGGGGAGGAGACAGACAAGGAGGGGGAGATCGTAGACCCTTCCAGAAGAGAGGCGGAAATTCGTGGCGAGGGCCACACCAACAGAACAACTACTATCAGAGGCCCCCTTTTTGTTTCATATGTAAGGGGGCCCATCAGGTGTCTGATTGCCCGGTGCGAGCAGCCCTCCAAGCTTTTCAAGCCACTTTTGACACTGATCCCGAAGTCGAAGCGGTAGCCGTAGAGACTGAGGGACCACAAGCTGAAGTTGAGAACAACCCCCGAATGGGGGCACTGAAATTCCTCTCTGCTCTCCAGAAGAAAGTGGGGGAGACCAAAGAACCATTAGAAAGAGGACTCATGTACGTTGATGCATGGGTGAATCACAAGTCGGCCAAGAGCACGATGGTCGACTCGGGAGCCACCCATAACTTTATGACTGAGACAGAAGCACGTCGGCTTAACTTGCACTGGGACAGAGACACAGACAAAATGAAAGCTGTCAATTCGGCAGCCTTACCCATTATGAGGCATTGA

Coding sequence (CDS)

ATGGACATCCAAGAGGGCCGTTGCACCATAGATAGTTGGGAAAGATTGAAACAGGAACTTCGTTCTCAGTTTTTCCCCGAGAATGTGGAAATTTTGGCGAGGCGGAAGTTGAGAGAGCTCAAGCATACAGGCAACATCCGAGATTACGTGAAACAGTTCTCCGGGTTAATGTTGGACATCCGCGATATGTCAGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGTTTGAAGCTGTGGGCGAAATCCAAACTTTATGAACAGCGGGTGCAAGACCTTTCTACTGCCTATGCAGCGGCAGAGCGGCTGTTCGACCTCAGTAATGACCAGTCCCAAGACGTGAGACGGAATCCGGGCCCTTCTAATGGAGGAAACAGAAATAACCGACCAGGCTCCCCCAAAAGTGGGGGAGGAGACAGACAAGGAGGGGGAGATCGTAGACCCTTCCAGAAGAGAGGCGGAAATTCGTGGCGAGGGCCACACCAACAGAACAACTACTATCAGAGGCCCCCTTTTTGTTTCATATGTAAGGGGGCCCATCAGGTGTCTGATTGCCCGGTGCGAGCAGCCCTCCAAGCTTTTCAAGCCACTTTTGACACTGATCCCGAAGTCGAAGCGGTAGCCGTAGAGACTGAGGGACCACAAGCTGAAGTTGAGAACAACCCCCGAATGGGGGCACTGAAATTCCTCTCTGCTCTCCAGAAGAAAGTGGGGGAGACCAAAGAACCATTAGAAAGAGGACTCATGTACGTTGATGCATGGGTGAATCACAAGTCGGCCAAGAGCACGATGGTCGACTCGGGAGCCACCCATAACTTTATGACTGAGACAGAAGCACGTCGGCTTAACTTGCACTGGGACAGAGACACAGACAAAATGAAAGCTGTCAATTCGGCAGCCTTACCCATTATGAGGCATTGA

Protein sequence

MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDIRDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPSNGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQVSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETKEPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAALPIMRH

Homology

[Close]

BLAST of Lag0002407 vs. NCBI nr
Match: KAA0047432.1 (uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 422.9 bits (1086), Expect = 2.3e-114
Identity = 215/303 (70.96%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 109 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 168

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++ YAAAERLFDLSND SQD RR+P  S
Sbjct: 169 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSTYAAAERLFDLSND-SQDTRRHPSSS 228

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR +Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 229 SGGSRNNRPSSPKTTGGDRRSNGDRRSYQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 288

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 289 ARECPNKTAFNAFQASLTSDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETN 348

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 349 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 408

Query: 301 PIM 304
           PI+
Sbjct: 409 PII 409

[Close]

BLAST of Lag0002407 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 421.8 bits (1083), Expect = 5.1e-114
Identity = 215/303 (70.96%), Postives = 249/303 (82.18%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQ+GRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQKGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR +Q   GNSWRG + Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFSGDRRSYQSNTGNSWRGSNNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. NCBI nr
Match: TYK25585.1 (uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa])

HSP 1 Score: 421.4 bits (1082), Expect = 6.7e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLASDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 8.7e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 217 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 276

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 277 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 336

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 337 SGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 396

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 397 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 456

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 457 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 516

Query: 301 PIM 304
           PI+
Sbjct: 517 PII 517

[Close]

BLAST of Lag0002407 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 8.7e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. ExPASy TrEMBL
Match: A0A5A7TVD8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00230 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 1.1e-114
Identity = 215/303 (70.96%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 109 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 168

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++ YAAAERLFDLSND SQD RR+P  S
Sbjct: 169 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSTYAAAERLFDLSND-SQDTRRHPSSS 228

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR +Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 229 SGGSRNNRPSSPKTTGGDRRSNGDRRSYQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 288

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 289 ARECPNKTAFNAFQASLTSDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETN 348

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 349 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 408

Query: 301 PIM 304
           PI+
Sbjct: 409 PII 409

[Close]

BLAST of Lag0002407 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 2.5e-114
Identity = 215/303 (70.96%), Postives = 249/303 (82.18%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQ+GRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQKGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR +Q   GNSWRG + Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFSGDRRSYQSNTGNSWRGSNNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.2e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLASDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 4.2e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

[Close]

BLAST of Lag0002407 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 4.2e-114
Identity = 216/303 (71.29%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 1   MDIQEGRCTIDSWERLKQELRSQFFPENVEILARRKLRELKHTGNIRDYVKQFSGLMLDI 60
           +DIQEGRCTID+W+ LK+ELRSQFFPENVEILARRKLRELKHTG+IR+YVKQF+GLMLDI
Sbjct: 221 VDIQEGRCTIDTWDALKRELRSQFFPENVEILARRKLRELKHTGSIREYVKQFAGLMLDI 280

Query: 61  RDMSEKDKVFCFVEGLKLWAKSKLYEQRVQDLSTAYAAAERLFDLSNDQSQDVRRNPGPS 120
           RDMSEKDKVFCFVEGLK WAK+KLYEQRVQDL++AYAAAERLFDLSND SQD RR+P  S
Sbjct: 281 RDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSND-SQDTRRHPSSS 340

Query: 121 NGGNRNNRPGSPKSGGGDRQGGGDRRPFQKRGGNSWRGPHQQNNYYQRPPFCFICKGAHQ 180
           +GG+RNNRP SPK+ GGDR+  GDRR  Q   GNSWRG   Q N   RP  CFICKG H 
Sbjct: 341 SGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQ-NLSNRPLSCFICKGPHM 400

Query: 181 VSDCPVRAALQAFQATFDTDPEVEAVAVETEGPQAEVENNPRMGALKFLSALQKKVGETK 240
             +CP + A  AFQA+  +D + +    E E  Q E  +NPRMGALKFLS+LQKKVGET 
Sbjct: 401 ARECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETN 460

Query: 241 EPLERGLMYVDAWVNHKSAKSTMVDSGATHNFMTETEARRLNLHWDRDTDKMKAVNSAAL 300
            P+ERGLMYVD W+N K  KSTMVDSGATHNF+TE EA+RLNL W++D  +MKAVNSAAL
Sbjct: 461 TPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAAL 520

Query: 301 PIM 304
           PI+
Sbjct: 521 PII 521

The following BLAST results are available for this feature:

BLAST of Lag0002407 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047432.1	2.3e-114	70.96	uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]	[more]
KAA0032849.1	5.1e-114	70.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK25585.1	6.7e-114	71.29	uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa]	[more]
KAA0067557.1	8.7e-114	71.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	8.7e-114	71.29	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of Lag0002407 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVD8	1.1e-114	70.96	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SUK4	2.5e-114	70.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5D3DQ20	3.2e-114	71.29	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C4R1	4.2e-114	71.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	4.2e-114	71.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Lag0002407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 10..77 e-value: 2.0E-12 score: 47.2
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 230..303 e-value: 5.9E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..133
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 5..291
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 5..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002407.1	Lag0002407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity