Lag0002406 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002406
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 42565549 .. 42570167 (+)
RNA-Seq Expression	Lag0002406
Synteny	Lag0002406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTCTTCATAACCTGCAAAATCTATTGGTTGGGAGGAAAGAGAAAGGAGGTGAGTACAACCATGGTACTGATAAGTAGCCCCTACCTGAGAAGCTATCAAACAATAACCAAATAACCAACATACTTGTCATGCACAAACAACATGCTTCTTAAAGCTGTAAACACAGCATCATACTCAAAAAACAAGTAAAACAAACGACTCACCTAAGCCATAACTCATGCATCCCACCATACAACTCACTAATCACTCAAGCTCCATGAGATTCTCAACATGTTTAGCCCTAACAAAGCTCTCCAAGATTGACCCTTCGAGTTGCACTAACCCCTGACCATTTATACTCAGGGCTTTAATGCTCTCTACGGAGCTCGACATTCGATCCTTGACCATTTGTACTCAAGGCCTCGAGCTGTGCATCGTCCCATGACCATTTGTATCCAAGGTGCGCCGATGACTTAGCAACATGTTGCCCTTCCCCAAGTGCCCAACACTTTTTCTAGACTCATCACACCGACCCTGAACTGTACCCAAGGTCTCGATGCTCCTCTTATTCCAATGGTGACATGGCACCTCTTGACCATTTGTACCCAAGGTGCATTGACAGCCACCTATATTTCCTTTCTTTCACATTTCAGGTCCTCTGGTCTCTTTTCTCACAACTATCTAAAATGCACATGCCTTACATCATGCTTCTAGACTCATGTGCTATCCCCACCAAGCATATACATGCAACACTATGCTCTCATCTCATGCTTAATTCATAACTCACATAAGACATACATAAAGCGAGTAAACACACAACGTGCTATCATGCAATCAAATAGAATCTCAATTCAAAACTACTTACAGAAAGCTCTAAAGTGCTCCTAAACTAAGCGAAGAGGCTCCTGAAACACACAAATAACACTACAAGGTTAGAACTCAATGAAGAAGCTTTATCCAGAGCCAAACATTACTTATGAAGGATGTTCTTACCCAAAGCCACCATTAAAACTTTCGAATACTCCAACACTAATTCAAACCACTTGAAATTCACAAAGAATACCTTGGAACCTTGCTGGAAAATATCCAAGGTTATTTGATAGTACACAGAGAACGCAAAAATTATAAATTGTCCTCAAACCAACTTAAATGAGTTTGAAATAAACATTTTTATTCTTTCGGGAAAATATCCAAGGTTATTTGATAGTACACAGAGAACACGCAAAAGTTATAAATTTTCCTCAAACCAACTTAAATGAGTTTGAAATAAACATTTTTATTCTTTCCTTTTTTATTTCTTTTCTTCCCAGAGTAATTAACCCAAAACAAACTCCCAAAAGATTAGGAAGAAGGGGATTGCAGAGGAAGGGGGTCCGACAACGTGAAGAGAAGAAAAAAAGAGAAAGAGATGAGATTGATTTCTTTCGGGTTTTTCTTCTTTCCTTTTTAATTATTTTCTTCCAAGAGTAATTAACCCAAAACAAACCCACAAAAGATTTAGGAGAATCATAATTGAAAAGAGATTTGAATTGGAGATAAGAGGCCTACATTAAACTCCAAACTTTAGGATTTAAAGATTTACTTATGATCTTTTTTTCCAAAATTATAGAATTTACTTTACCGACTTTCCCAATGTACTTGTTACCAATGTATTTCTGCTCATAAAGCAACCATGCACTAAAGTGCCAAGGTTCTAGTCTCAACATTGATGAACTTCCAGACACGACTAATGAAGCACGATGTGTTGCAGACAACATTTGGGCCAAGAACACCTATTAACAACTAGACCAATGTGCTCAAAGGTCTCGAATAGTCCAATATATTTGGACTAAGCTATCCATCACCACAACACGCAGGACACCTTTCATTATTGTCGCTTGAGAAGGCATAGATCACCAACATTGAACTCACCTTTGCACCTATTACCTTCACAAACTCTCAACCTTCATTGGCAACTAACATTTTTTGTTCTAATCCTTTAGATAGCTTCGTTAGCCAACTTTATCCAGTAGGAACAAGAACTTACTAAGAGACTGAACAATTCACTATTCCAAAAATGTTTCTTAAGATCCTCATACATCTTGGTGATATGAGTATGAACCGAAAAAGATGTTTTGTGCGCCTCTTATAACAAATCTCGCTTATGAGGATAATCCTGTCACTATAACCTTGGTATAGCCAAGTTGAATCACTGACACGAGTAAAATTCCCTTGACTTAGCTCGCTCACACATTTAACCAAATTTGGATCCTTTTGTTGGCCATCTGCAATCCACTATTTCAAACTAGGCACCACTAAAGTTGAGTCCACAATACTAAAAAGCTTTCCGCTGCCAACTCAATTTTATTTTATTTATTGAACAATCCAACTCTCTTAGCAACATACAATGAGATGACACAAGAATGTCACACTTGTTGTCCTATTGCTAAGTTCATACCACAATTATCTTGTCATGGTGAAAATTGATTTCACAACCACAATTCTTTACTTCCAAGAACTTCATTTACCCTAAGTTGAATGTTTTTGCCCAAAGAAATACTTCAAACTCTTGTGACCTATGAGTTTGGATACTTTCTCCATAAGGAAAGTGCCTTTAGCTATCTAGAGTCAAATACTGCAACTGCGAGTTCCAAGTCACGAGCATGATAGTTAAGCTCATGTCTCCTTAGGAGACGCAAGGTGTAAACAATAACCTTTCCATATTGCACAAGTTTACAACCTTGTCCTTTTTCTTGAAGCATCATTGACGAGTGTCAACCTCACGTACCAACATGAATAGTCAACATTGAGACCGTATTTAGTAATTCCTTTAACTTCTAGGACTCTTCTTACAAACTTCGCTTCGAGTGATAGAGGTATTCTTAAACCTTGCAAGTTAACTGAATCCATGGTACTACCAACTGGCAAGATTCTAAGTAAACTCCAAAACTCTCTAAGGTAACTTTTCAACTTGAGGAGATTGTGAATCTTAGCCACTATATTGGGTTTAAACCAATTACAAACTGTTTTTACTTTCGTGAAGTCCATCGGGAAACTGTCTTTAGAATCCAAATGTTCGAGAAAGCAACCTCATCCAAACAAAACTCATCCTTTGAATAAAGTACAACTTACTACCTCTAAAGGTTGCCAAAACTTACTCAAGACATTCCTTAAGAGATTCCTTGGTCTTAGAATAACCCAATACGTCAACAAGGAACACTACCATGAACAAGTCAAAAGGCTCTAAAGACTGGCTTCAAAAGATCCCTAAAAAAAATTCTTGGTTTTTTCTTCCAAAGTTTTCTCCAATAGTTTTCCTAGAGTAACCTACCTAAAAAAAACTCGACAACTTTCAAGCTTTTCTCTTCTAGAGTAACCTACCCAAGGAAGAATCGTTGACGAGAAAGACAAAATCATAGGATAAAAATGTAAAAAAACAACAGTAATAAGAATACCTTAGCAATTGATGGTGGATGAAAGGCTGAAGCTCCCTGCACATAAAAACAATGGTTCCCAATAGTCTGGGAAGTAAAAGATGCCCCTGTAATAAAATAATGGCATACCACTCACAGGCAAAAGACACTTTTATGAGAACTGAAGAACTGATTGTGTAGATTATTTCAATTTTTAAATTTATATTTTCCTTATTTAGATTAGATTTTATTCTATCTTTATAGTTTCCTTTTATGTATTTTTATGGTGTATATATCTTCTTGTATTTTGGTGATTAAGTAAAATGAAATAATTTTTCTCCCAAAACCACATGGTATCAGAGCAGCCCTAAAAATAAAACCCTAACCCTAAAATAAAACCCTAGCCGTCAGACACTATCTTTACCGGCGAACCCTCCTTCCGACAACCCTCCGACGAGCTCTTCTTTCTTCTTCGGCGAACTCTCATCGGCGAACGGAGTTCGTAACAGTCGCAACAGAACTCGTGTTAACGTCTGCTCGTCTGCTCACGTTCACGTTTGCTCGTCTGTTCGAAGTTCGTCAGCTGCCGCCGCTGCTTGCCACTCGTCCGTCGCTCGCTGCTCGTCAGTTGCCGCCGCGCGCAACTCGCCGCTTGTTTGCCTCCGCCACTCGCCGCTCGGCTGCTCATCAGATTTTTTTTCCGCTGGTTTGCTCGTTTTTTGTTGCTCAGTTTTTTGGTCGGCTTGTTTTTCCAGATTTGGTTGTTTGGTTGTTCAAGGCTTTCAACGATTTCAAATGGCGAAACACGGGTTAGCAAGTGTTAGTTATGAAAACTCCTCTCAACCTCACAATTCCTCTCCTCAAATTGTGACTAATCATAAACTTCAAGGTCACAATTTTCTTCAATCGAATCAATCAGTCTTCATATATATCTGTGGCCGTGGTAAAGATGGTCATCTAACTGGTGATACCCCTGCACCGGATGCTAAAGACCCGAAGTTTCGATCATGGAAAACTGATGATCATTTGGTCATGTCTTGGCTACTAAACTCTATGACTCCAGAGGTTGGAGAGAACTTTCTATTGTTCAAAACAGCAAAAGAGATATGGGATGCAACCCGTGACACCTATTCCAGCTCAGAGAACTCATCTGCTCTATTGGCTATTGAAACCCAGTTGTATGATTTACGTCAAGGAGACCTTAATGCTACTCAGTACTTTAATCTTCTTGTTCGAAACTGA

mRNA sequence

ATGACAGTCTTCATAACCTGCAAAATCTATTGGTTGGGAGGAAAGAGAAAGGAGGTGAGTACAACCATGGGCTTTAATGCTCTCTACGGAGCTCGACATTCGATCCTTGACCATTTGTACTCAAGGCCTCGAGCTGTGCATCGTCCCATGACCATTTGTATCCAAGGTCTCGATGCTCCTCTTATTCCAATGGTGACATGGCACCTCTTGACCATTTGTACCCAAGGTGCATTGACAGCCACCTATATTTCCTTTCTTTCACATTTCAGGACTCTTCTTACAAACTTCGCTTCGAGTGATAGAGGTATTCTTAAACCTTGCAAGTTAACTGAATCCATGGTACTACCAACTGGCAAGATTCTAAGTAAACTCCAAAACTCTCTAAGCCGTCAGACACTATCTTTACCGGCGAACCCTCCTTCCGACAACCCTCCGACGAGCTCTTCTTTCTTCTTCGGCGAACTCTCATCGGCGAACGGAGTTCGTAACAGTCGCAACAGAACTCGTGTTAACGTCTGCTCGTCTGCTCACGTTCACGTTTGCTCGTCTGTTCGAAGTTCGTCAGCTGCCGCCGCTGCTTGCCACTCGTCCGTCGCTCGCTGCTCGTCAGTTGCCGCCGCGCGCAACTCGCCGCTTGTTTGCCTCCGCCACTCGCCGCTCGGCTGCTCATCAGATTTTTTTTCCGCTGGTTTGCTCGTTTTTTGTTGCTCAGTTTTTTGGTCGGCTTGTTTTTCCAGATTTGGTTGTTTGGTTGTTCAAGGCTTTCAACGATTTCAAATGGCGAAACACGGGTTAGCAAGTGTTAGTTATGAAAACTCCTCTCAACCTCACAATTCCTCTCCTCAAATTGTGACTAATCATAAACTTCAAGGTCACAATTTTCTTCAATCGAATCAATCAGTCTTCATATATATCTGTGGCCGTGGTAAAGATGGTCATCTAACTGGTGATACCCCTGCACCGGATGCTAAAGACCCGAAGTTTCGATCATGGAAAACTGATGATCATTTGGTCATGTCTTGGCTACTAAACTCTATGACTCCAGAGGTTGGAGAGAACTTTCTATTGTTCAAAACAGCAAAAGAGATATGGGATGCAACCCGTGACACCTATTCCAGCTCAGAGAACTCATCTGCTCTATTGGCTATTGAAACCCAGTTGTATGATTTACGTCAAGGAGACCTTAATGCTACTCAGTACTTTAATCTTCTTGTTCGAAACTGA

Coding sequence (CDS)

ATGACAGTCTTCATAACCTGCAAAATCTATTGGTTGGGAGGAAAGAGAAAGGAGGTGAGTACAACCATGGGCTTTAATGCTCTCTACGGAGCTCGACATTCGATCCTTGACCATTTGTACTCAAGGCCTCGAGCTGTGCATCGTCCCATGACCATTTGTATCCAAGGTCTCGATGCTCCTCTTATTCCAATGGTGACATGGCACCTCTTGACCATTTGTACCCAAGGTGCATTGACAGCCACCTATATTTCCTTTCTTTCACATTTCAGGACTCTTCTTACAAACTTCGCTTCGAGTGATAGAGGTATTCTTAAACCTTGCAAGTTAACTGAATCCATGGTACTACCAACTGGCAAGATTCTAAGTAAACTCCAAAACTCTCTAAGCCGTCAGACACTATCTTTACCGGCGAACCCTCCTTCCGACAACCCTCCGACGAGCTCTTCTTTCTTCTTCGGCGAACTCTCATCGGCGAACGGAGTTCGTAACAGTCGCAACAGAACTCGTGTTAACGTCTGCTCGTCTGCTCACGTTCACGTTTGCTCGTCTGTTCGAAGTTCGTCAGCTGCCGCCGCTGCTTGCCACTCGTCCGTCGCTCGCTGCTCGTCAGTTGCCGCCGCGCGCAACTCGCCGCTTGTTTGCCTCCGCCACTCGCCGCTCGGCTGCTCATCAGATTTTTTTTCCGCTGGTTTGCTCGTTTTTTGTTGCTCAGTTTTTTGGTCGGCTTGTTTTTCCAGATTTGGTTGTTTGGTTGTTCAAGGCTTTCAACGATTTCAAATGGCGAAACACGGGTTAGCAAGTGTTAGTTATGAAAACTCCTCTCAACCTCACAATTCCTCTCCTCAAATTGTGACTAATCATAAACTTCAAGGTCACAATTTTCTTCAATCGAATCAATCAGTCTTCATATATATCTGTGGCCGTGGTAAAGATGGTCATCTAACTGGTGATACCCCTGCACCGGATGCTAAAGACCCGAAGTTTCGATCATGGAAAACTGATGATCATTTGGTCATGTCTTGGCTACTAAACTCTATGACTCCAGAGGTTGGAGAGAACTTTCTATTGTTCAAAACAGCAAAAGAGATATGGGATGCAACCCGTGACACCTATTCCAGCTCAGAGAACTCATCTGCTCTATTGGCTATTGAAACCCAGTTGTATGATTTACGTCAAGGAGACCTTAATGCTACTCAGTACTTTAATCTTCTTGTTCGAAACTGA

Protein sequence

MTVFITCKIYWLGGKRKEVSTTMGFNALYGARHSILDHLYSRPRAVHRPMTICIQGLDAPLIPMVTWHLLTICTQGALTATYISFLSHFRTLLTNFASSDRGILKPCKLTESMVLPTGKILSKLQNSLSRQTLSLPANPPSDNPPTSSSFFFGELSSANGVRNSRNRTRVNVCSSAHVHVCSSVRSSSAAAAACHSSVARCSSVAAARNSPLVCLRHSPLGCSSDFFSAGLLVFCCSVFWSACFSRFGCLVVQGFQRFQMAKHGLASVSYENSSQPHNSSPQIVTNHKLQGHNFLQSNQSVFIYICGRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDATRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVRN

Homology

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BLAST of Lag0002406 vs. NCBI nr
Match: PKA63925.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica])

HSP 1 Score: 213.4 bits (542), Expect = 3.7e-51
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 259 QMAKHGLASVSYENSSQP--HNSSPQIVTNHKLQGHNFLQSNQSVFIYICGRGKDGHLTG 318
           Q +   + S S  NSS P   ++S  +VTNHKL GHNFLQ +QSVF+YICGRGKDGHLTG
Sbjct: 4   QSSSSEVTSRSESNSSLPIVSDNSSHLVTNHKLHGHNFLQWSQSVFMYICGRGKDGHLTG 63

Query: 319 DTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDATRDTYSSSEN 378
           +  AP+  DPK+R+W+TDDHLVMSWL+NSMT EVGENFLLF+TAKEIW+A R+TYSS+EN
Sbjct: 64  EISAPETTDPKYRAWRTDDHLVMSWLINSMTTEVGENFLLFRTAKEIWEAARETYSSTEN 123

Query: 379 SSALLAIETQLYDLRQGDLNATQYFNLLVR 407
           SS L  IET+LYDLRQG+L+ TQYFN L R
Sbjct: 124 SSELFEIETRLYDLRQGELSVTQYFNTLTR 153

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BLAST of Lag0002406 vs. NCBI nr
Match: XP_023738515.1 (uncharacterized protein LOC111886493 [Lactuca sativa])

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-45
Identity = 88/122 (72.13%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 285 TNHKLQGHNFLQSNQSVFIYICGRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLN 344
           T+HKL G NF Q +QSVF++ICGR KDGHLTG+T A D+KDPKFR+W+T+DHLVMSWL+N
Sbjct: 29  TSHKLNGQNFFQWSQSVFMFICGRDKDGHLTGETVAADSKDPKFRTWRTNDHLVMSWLIN 88

Query: 345 SMTPEVGENFLLFKTAKEIWDATRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLL 404
           SMT EVGENFLL+KTA+EIW+A ++TYSS+ENSS L  +ET+LYDLRQGDL+ TQYF+LL
Sbjct: 89  SMTTEVGENFLLYKTAQEIWEAAKETYSSTENSSELFELETKLYDLRQGDLSVTQYFHLL 148

Query: 405 VR 407
            R
Sbjct: 149 SR 150

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BLAST of Lag0002406 vs. NCBI nr
Match: KAG5219081.1 (Retrovirus-related polyprotein from transposon [Salix suchowensis] >KAG5250156.1 Retrovirus-related polyprotein from transposon [Salix suchowensis])

HSP 1 Score: 175.6 bits (444), Expect = 8.5e-40
Identity = 76/129 (58.91%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 279 SSPQIVTNHKLQGHNFLQSNQSVFIYICGRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLV 338
           +S  ++T HKL G+N+LQ + SV ++ICG+G+D +LTG+   P  +DP+FR+WKT++H++
Sbjct: 29  NSSLLITCHKLNGYNYLQWSSSVMMFICGKGRDDYLTGEATMPGKEDPQFRNWKTENHMI 88

Query: 339 MSWLLNSMTPEVGENFLLFKTAKEIWDATRDTYSSSENSSALLAIETQLYDLRQGDLNAT 398
           MSWL+NSMT E+GENFLL+ TAKEIWDA R+TYS+S+N+S L  IE  L+DLRQG+LN T
Sbjct: 89  MSWLINSMTNEIGENFLLYGTAKEIWDAARETYSNSDNTSELFEIEAALHDLRQGELNVT 148

Query: 399 QYFNLLVRN 408
           QYFN L R+
Sbjct: 149 QYFNTLTRH 157

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BLAST of Lag0002406 vs. NCBI nr
Match: XP_034898954.1 (uncharacterized protein LOC118037156 [Populus alba])

HSP 1 Score: 172.9 bits (437), Expect = 5.5e-39
Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQPHNSS-----------PQIVTNHKLQGHNFLQSNQSVFIYICGR 319
           MA  G +S+S E +SQP  +S              +T HKL G+N+LQ + SV ++ICG+
Sbjct: 1   MAAAGQSSLS-EVTSQPGTTSFVSLSGGTEGTSHQITGHKLNGYNYLQWSSSVMMFICGK 60

Query: 320 GKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDATR 379
           G+D +LTGD   P+  DP FR+WKT++H+VMSWL+NSMT E+GENFLL+ TAKEIW+A R
Sbjct: 61  GRDDYLTGDIIIPERNDPMFRTWKTENHMVMSWLINSMTNEIGENFLLYGTAKEIWEAAR 120

Query: 380 DTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVRN 408
           +TYSSSEN+S L  IE  L+DLRQG+L+ TQ+FN L R+
Sbjct: 121 ETYSSSENTSELFEIEAVLHDLRQGELSITQFFNTLCRH 158

[Close]

BLAST of Lag0002406 vs. NCBI nr
Match: RVX20378.1 (hypothetical protein CK203_004521 [Vitis vinifera])

HSP 1 Score: 172.9 bits (437), Expect = 5.5e-39
Identity = 78/160 (48.75%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQPH-------------NSSPQIVTNHKLQGHNFLQSNQSVFIYIC 319
           M K+G+AS    + + P              +SSP ++T HKL GHN+LQ +QSV ++IC
Sbjct: 1   MTKYGMASSQVSSVTSPESGGRSEIPNLGGSDSSPILITGHKLNGHNYLQWSQSVLLFIC 60

Query: 320 GRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDA 379
           G+GKD +LTG+   P+  +P FR WK ++ ++MSWL+NSM  ++GENFLLF+TAK+IWDA
Sbjct: 61  GKGKDEYLTGEAAMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFRTAKDIWDA 120

Query: 380 TRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVR 407
            ++TYSSSEN+S L  +E+ L+D RQG+ + TQY+N L R
Sbjct: 121 AKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTR 160

[Close]

BLAST of Lag0002406 vs. ExPASy TrEMBL
Match: A0A2I0B7Z4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash004935 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-51
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 259 QMAKHGLASVSYENSSQP--HNSSPQIVTNHKLQGHNFLQSNQSVFIYICGRGKDGHLTG 318
           Q +   + S S  NSS P   ++S  +VTNHKL GHNFLQ +QSVF+YICGRGKDGHLTG
Sbjct: 4   QSSSSEVTSRSESNSSLPIVSDNSSHLVTNHKLHGHNFLQWSQSVFMYICGRGKDGHLTG 63

Query: 319 DTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDATRDTYSSSEN 378
           +  AP+  DPK+R+W+TDDHLVMSWL+NSMT EVGENFLLF+TAKEIW+A R+TYSS+EN
Sbjct: 64  EISAPETTDPKYRAWRTDDHLVMSWLINSMTTEVGENFLLFRTAKEIWEAARETYSSTEN 123

Query: 379 SSALLAIETQLYDLRQGDLNATQYFNLLVR 407
           SS L  IET+LYDLRQG+L+ TQYFN L R
Sbjct: 124 SSELFEIETRLYDLRQGELSVTQYFNTLTR 153

[Close]

BLAST of Lag0002406 vs. ExPASy TrEMBL
Match: A0A438KGR6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004521 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39
Identity = 78/160 (48.75%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQPH-------------NSSPQIVTNHKLQGHNFLQSNQSVFIYIC 319
           M K+G+AS    + + P              +SSP ++T HKL GHN+LQ +QSV ++IC
Sbjct: 1   MTKYGMASSQVSSVTSPESGGRSEIPNLGGSDSSPILITGHKLNGHNYLQWSQSVLLFIC 60

Query: 320 GRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDA 379
           G+GKD +LTG+   P+  +P FR WK ++ ++MSWL+NSM  ++GENFLLF+TAK+IWDA
Sbjct: 61  GKGKDEYLTGEAAMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFRTAKDIWDA 120

Query: 380 TRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVR 407
            ++TYSSSEN+S L  +E+ L+D RQG+ + TQY+N L R
Sbjct: 121 AKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTR 160

[Close]

BLAST of Lag0002406 vs. ExPASy TrEMBL
Match: A0A438KNE1 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_350 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-39
Identity = 78/160 (48.75%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQP-------------HNSSPQIVTNHKLQGHNFLQSNQSVFIYIC 319
           M K+G+AS    + + P             ++SSP ++T HKL GHN+LQ +QSV ++IC
Sbjct: 1   MTKYGMASSQVSSVTSPESGGRSEIPNLGGNDSSPILITGHKLNGHNYLQWSQSVLLFIC 60

Query: 320 GRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDA 379
           G+GKD +LTG+   P+  +P FR WK +++++MSWL+NSM  ++GENFLLF TAK+IWDA
Sbjct: 61  GKGKDEYLTGEAVMPETTEPGFRKWKIENNMIMSWLINSMNNDIGENFLLFGTAKDIWDA 120

Query: 380 TRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVR 407
            ++TYSSSEN+S L  +E+ L+D RQG+ + TQY+N L R
Sbjct: 121 AKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTR 160

[Close]

BLAST of Lag0002406 vs. ExPASy TrEMBL
Match: A0A438IAX1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1120 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-39
Identity = 78/160 (48.75%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQP-------------HNSSPQIVTNHKLQGHNFLQSNQSVFIYIC 319
           M K+G+AS    + + P             ++SSP ++T HKL GHN+LQ +QSV ++IC
Sbjct: 157 MTKYGMASSQVSSVTSPESGGRSEIPNLGGNDSSPILITGHKLNGHNYLQWSQSVLLFIC 216

Query: 320 GRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDA 379
           G+GKD +LTG+   P+  +P FR WK ++ ++MSWL+NSM  ++GENFLLF TAK+IWDA
Sbjct: 217 GKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKDIWDA 276

Query: 380 TRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVR 407
            ++TYSSSEN+S L  +E+ L+D RQG+ + TQY+N L R
Sbjct: 277 AKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTR 316

[Close]

BLAST of Lag0002406 vs. ExPASy TrEMBL
Match: A0A438D529 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1782 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-39
Identity = 78/160 (48.75%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 260 MAKHGLASVSYENSSQP-------------HNSSPQIVTNHKLQGHNFLQSNQSVFIYIC 319
           M K+G+AS    + + P             ++SSP ++T HKL GHN+LQ +QSV ++IC
Sbjct: 229 MTKYGMASSQVSSVTSPESGGRSEIPNLGGNDSSPILITGHKLNGHNYLQWSQSVLLFIC 288

Query: 320 GRGKDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDA 379
           G+GKD +LTG+   P+  +P FR WK ++ ++MSWL+NSM  ++GENFLLF TAK+IWDA
Sbjct: 289 GKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKDIWDA 348

Query: 380 TRDTYSSSENSSALLAIETQLYDLRQGDLNATQYFNLLVR 407
            ++TYSSSEN+S L  +E+ L+D RQG+ + TQY+N L R
Sbjct: 349 AKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTR 388

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BLAST of Lag0002406 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 9.1e-08
Identity = 29/95 (30.53%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 310 KDGHLTGDTPAPDAKDPKFRSWKTDDHLVMSWLLNSMTPEVGENFLLFKTAKEIWDATRD 369
           K G + G  P PD   P ++ W+  + +VM WL+NSMT ++ E+ +  +TA ++W+  R 
Sbjct: 58  KFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 117

Query: 370 TYSSSENSSALLAIETQLYDLRQGDLNATQYFNLL 405
            +    +   +  +  +L  LRQG  +  +YF  L
Sbjct: 118 VFVPCVDLK-IYQLRRRLATLRQGGDSVEEYFGKL 151

The following BLAST results are available for this feature:

BLAST of Lag0002406 vs. NCBI nr


Match Name	E-value	Identity	Description
PKA63925.1	3.7e-51	68.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzheni...	[more]
XP_023738515.1	1.4e-45	72.13	uncharacterized protein LOC111886493 [Lactuca sativa]	[more]
KAG5219081.1	8.5e-40	58.91	Retrovirus-related polyprotein from transposon [Salix suchowensis] >KAG5250156.1...	[more]
XP_034898954.1	5.5e-39	54.09	uncharacterized protein LOC118037156 [Populus alba]	[more]
RVX20378.1	5.5e-39	48.75	hypothetical protein CK203_004521 [Vitis vinifera]	[more]

BLAST of Lag0002406 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0B7Z4	1.8e-51	68.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Apostasia shenzhe...	[more]
A0A438KGR6	2.7e-39	48.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004521 PE=4 SV=1	[more]
A0A438KNE1	4.5e-39	48.75	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_350 PE=4 SV=1	[more]
A0A438IAX1	7.8e-39	48.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438D529	7.8e-39	48.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Lag0002406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	9.1e-08	30.53	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 274..406
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 274..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002406.1	Lag0002406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding