Lag0002375 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002375
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr4: 42252450 .. 42254203 (-)
RNA-Seq Expression	Lag0002375
Synteny	Lag0002375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACAACCTGTAAGCAAGAAGGGCAGCTACATGCTGCAAAAGGGATTCCTGAGTGACCAAGGTAGCGAAGAAAAAGAAGACACACAAACAAACATGGATAACCAGGATATGGAGATGGAGACGGCAAACGACAAAGATAAGGAAAATCCAAAAAATACAGCAGAAGAGGTTGCAGACAAACTCGAAAAAATGAAGATAACAATCGCAGAAAGAGCCAAAGTAGTGGCTATTGAGGATGACGACCTTGAGGAAGCGACAGAAGACCTCCAAGGGGCAGTATTATGCAGAGTGATCACTTTAAAGCTTATCAATCCAGAAATTTTCAAAACATTCATGCCAAAAATATGGAATAAGGAAGGAAGAGTGCGCATAAAGCCCAAGGGCAGAAACACCTTCTTGTGTGAATTTAACAACTCTCATGAGAAGGAAAGAATAAAAAAAGGGGGCCTTGGAACTACGACAAAGCTCTATTAGTTATGGAAGAGGCGCAAGGAGCTAGCAGGATCTCAACAACAGCATTCAGGTATGTGAGTTTCTGGATTCACATACATGACTTACCTATGGTTTGCCATCGCAGGAAATGGGCGATTCAACTAGGCAATTCAATTGGAGAATTCGTTGATGTGGATCTCGAGGAAGAAGGAGGCAGCGGGGAAAACACCCTGAGAATCTTGGTGAAAATCGACATAATGCAACCGTTAAAGAGAGGGCTAATGGTCAGAATAGGATCCAAAGCAGAGGAAACTTGGGTAAAGGCATCTTATGAACGTCTCCCAGAATTCTGCTATGGTTGCGGCACGATAGGGCATATTCAACAAGAGTGCGAAGCAGAGAGCAAGAGCGAGGAAGAAAACCTGTATGGAGAATGGTTGAGAGCAACTCCTATTCTCGGAGGTCCGCCGAGGCAAAAACCTCAAAATCCCTTCAGGGGCGGCCCTTGGGGAAGGGGAAGAGGGCGAAGAGCAGCGTTCCAGAATTTTAGAGAGGATTGGAGCTCGGGCAGAAGCAACAGAGAAAACTGGAGAAGAAAAGACCCTGGACCAGATTGTGAAAACGCCCGCAAAGAAGGAGGAAAAGTTGAAGTTTCCGGCGTAAACGAAGAGGCTCCGGCGAGAGGCTCCGATTACAGTCCAGGCGAAACTCCAACGGCTAGTTTTAGGTCAGATAAAGGAAAGGTTGTAGAAGAGTCAGACCAAAACAGTGCAGCAGATAGGGGAAAAGGAAAAGAACCAGAGGATAAAGGTCATATCAGAGTCTCTCTTAAGAATAAAGGACAAAATGGGGAAAAAGAGTACAGACAGACAGTGGGGATTGTGATTAAGGACGACAGTGATGGAATGGAAAAGTCAAAAGGAAAAACGTTCGACCTAAAGCATCCAGCCAATACTAGGCCAACTTTTGGCAATGGGCCACTTGGGCCAAATAAAGAGATTATAAGGGCCATAAAGCAAATCGATCAGAAAGAAAAAAAAGGGACAATAGAACCCGGAGGCCCCCTCGGACAGGAGAATAGAGAGGAACAGGGGAAAAACTTAAGAAAGTGGAAGAGGAGGGCCAGATGTGACTCGGGAAAAGCCTATTCACAAAGCAATTCAGACATATTGATGAGTATGGAGAAGAGAAAACTGGAAAATAGTGCCCAAGGAGAGGAAAAGGAATTAGTTAAAAAAAAACAGTGCATACCTTACTTCGAGGTCGACGAAGGGATATCGGCGGAGGCTGAAATTCAGCCCCGCCGGACGCCATGA

mRNA sequence

ATGGAGGGACAACCTGTAAGCAAGAAGGGCAGCTACATGCTGCAAAAGGGATTCCTGAGTGACCAAGGTAGCGAAGAAAAAGAAGACACACAAACAAACATGGATAACCAGGATATGGAGATGGAGACGGCAAACGACAAAGATAAGGAAAATCCAAAAAATACAGCAGAAGAGGTTGCAGACAAACTCGAAAAAATGAAGATAACAATCGCAGAAAGAGCCAAAGTAGTGGCTATTGAGGATGACGACCTTGAGGAAGCGACAGAAGACCTCCAAGGGGCAGTATTATGCAGAGTGATCACTTTAAAGCTTATCAATCCAGAAATTTTCAAAACATTCATGCCAAAAATATGGAATAAGGAAGGAAGAGTGCGCATAAAGCCCAAGGGCAGAAACACCTTCTTGAAATGGGCGATTCAACTAGGCAATTCAATTGGAGAATTCGTTGATGTGGATCTCGAGGAAGAAGGAGGCAGCGGGGAAAACACCCTGAGAATCTTGGTGAAAATCGACATAATGCAACCGTTAAAGAGAGGGCTAATGGTCAGAATAGGATCCAAAGCAGAGGAAACTTGGGTAAAGGCATCTTATGAACGTCTCCCAGAATTCTGCTATGGTTGCGGCACGATAGGGCATATTCAACAAGAGTGCGAAGCAGAGAGCAAGAGCGAGGAAGAAAACCTGTATGGAGAATGGTTGAGAGCAACTCCTATTCTCGGAGGTCCGCCGAGGCAAAAACCTCAAAATCCCTTCAGGGGCGGCCCTTGGGGAAGGGGAAGAGGGCGAAGAGCAGCGTTCCAGAATTTTAGAGAGGATTGGAGCTCGGGCAGAAGCAACAGAGAAAACTGGAGAAGAAAAGACCCTGGACCAGATTGTGAAAACGCCCGCAAAGAAGGAGGAAAAGTTGAAGTTTCCGGCGTAAACGAAGAGGCTCCGGCGAGAGGCTCCGATTACAGTCCAGGCGAAACTCCAACGGCTAGTTTTAGGTCAGATAAAGGAAAGGTTGTAGAAGAGTCAGACCAAAACAGTGCAGCAGATAGGGGAAAAGGAAAAGAACCAGAGGATAAAGGTCATATCAGAGTCTCTCTTAAGAATAAAGGACAAAATGGGGAAAAAGAGTACAGACAGACAGTGGGGATTGTGATTAAGGACGACAGTGATGGAATGGAAAAGTCAAAAGGAAAAACGTTCGACCTAAAGCATCCAGCCAATACTAGGCCAACTTTTGGCAATGGGCCACTTGGGCCAAATAAAGAGATTATAAGGGCCATAAAGCAAATCGATCAGAAAGAAAAAAAAGGGACAATAGAACCCGGAGGCCCCCTCGGACAGGAGAATAGAGAGGAACAGGGGAAAAACTTAAGAAAGTGGAAGAGGAGGGCCAGATGTGACTCGGGAAAAGCCTATTCACAAAGCAATTCAGACATATTGATGAGTATGGAGAAGAGAAAACTGGAAAATAGTGCCCAAGGAGAGGAAAAGGAATTAGTTAAAAAAAAACAGTGCATACCTTACTTCGAGGTCGACGAAGGGATATCGGCGGAGGCTGAAATTCAGCCCCGCCGGACGCCATGA

Coding sequence (CDS)

ATGGAGGGACAACCTGTAAGCAAGAAGGGCAGCTACATGCTGCAAAAGGGATTCCTGAGTGACCAAGGTAGCGAAGAAAAAGAAGACACACAAACAAACATGGATAACCAGGATATGGAGATGGAGACGGCAAACGACAAAGATAAGGAAAATCCAAAAAATACAGCAGAAGAGGTTGCAGACAAACTCGAAAAAATGAAGATAACAATCGCAGAAAGAGCCAAAGTAGTGGCTATTGAGGATGACGACCTTGAGGAAGCGACAGAAGACCTCCAAGGGGCAGTATTATGCAGAGTGATCACTTTAAAGCTTATCAATCCAGAAATTTTCAAAACATTCATGCCAAAAATATGGAATAAGGAAGGAAGAGTGCGCATAAAGCCCAAGGGCAGAAACACCTTCTTGAAATGGGCGATTCAACTAGGCAATTCAATTGGAGAATTCGTTGATGTGGATCTCGAGGAAGAAGGAGGCAGCGGGGAAAACACCCTGAGAATCTTGGTGAAAATCGACATAATGCAACCGTTAAAGAGAGGGCTAATGGTCAGAATAGGATCCAAAGCAGAGGAAACTTGGGTAAAGGCATCTTATGAACGTCTCCCAGAATTCTGCTATGGTTGCGGCACGATAGGGCATATTCAACAAGAGTGCGAAGCAGAGAGCAAGAGCGAGGAAGAAAACCTGTATGGAGAATGGTTGAGAGCAACTCCTATTCTCGGAGGTCCGCCGAGGCAAAAACCTCAAAATCCCTTCAGGGGCGGCCCTTGGGGAAGGGGAAGAGGGCGAAGAGCAGCGTTCCAGAATTTTAGAGAGGATTGGAGCTCGGGCAGAAGCAACAGAGAAAACTGGAGAAGAAAAGACCCTGGACCAGATTGTGAAAACGCCCGCAAAGAAGGAGGAAAAGTTGAAGTTTCCGGCGTAAACGAAGAGGCTCCGGCGAGAGGCTCCGATTACAGTCCAGGCGAAACTCCAACGGCTAGTTTTAGGTCAGATAAAGGAAAGGTTGTAGAAGAGTCAGACCAAAACAGTGCAGCAGATAGGGGAAAAGGAAAAGAACCAGAGGATAAAGGTCATATCAGAGTCTCTCTTAAGAATAAAGGACAAAATGGGGAAAAAGAGTACAGACAGACAGTGGGGATTGTGATTAAGGACGACAGTGATGGAATGGAAAAGTCAAAAGGAAAAACGTTCGACCTAAAGCATCCAGCCAATACTAGGCCAACTTTTGGCAATGGGCCACTTGGGCCAAATAAAGAGATTATAAGGGCCATAAAGCAAATCGATCAGAAAGAAAAAAAAGGGACAATAGAACCCGGAGGCCCCCTCGGACAGGAGAATAGAGAGGAACAGGGGAAAAACTTAAGAAAGTGGAAGAGGAGGGCCAGATGTGACTCGGGAAAAGCCTATTCACAAAGCAATTCAGACATATTGATGAGTATGGAGAAGAGAAAACTGGAAAATAGTGCCCAAGGAGAGGAAAAGGAATTAGTTAAAAAAAAACAGTGCATACCTTACTTCGAGGTCGACGAAGGGATATCGGCGGAGGCTGAAATTCAGCCCCGCCGGACGCCATGA

Protein sequence

MEGQPVSKKGSYMLQKGFLSDQGSEEKEDTQTNMDNQDMEMETANDKDKENPKNTAEEVADKLEKMKITIAERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATPILGGPPRQKPQNPFRGGPWGRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPGETPTASFRSDKGKVVEESDQNSAADRGKGKEPEDKGHIRVSLKNKGQNGEKEYRQTVGIVIKDDSDGMEKSKGKTFDLKHPANTRPTFGNGPLGPNKEIIRAIKQIDQKEKKGTIEPGGPLGQENREEQGKNLRKWKRRARCDSGKAYSQSNSDILMSMEKRKLENSAQGEEKELVKKKQCIPYFEVDEGISAEAEIQPRRTP

Homology

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BLAST of Lag0002375 vs. NCBI nr
Match: XP_039827601.1 (uncharacterized protein LOC120689378 [Panicum virgatum])

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-18
Identity = 82/243 (33.74%), Postives = 116/243 (47.74%), Query Frame = 0


Query: 138 AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASY 197
           AIQ+G  +GEF++VDLE +  +    LR+ V+I+I +PL+RG+M+ +G  A+E W   +Y
Sbjct: 141 AIQIGEELGEFMEVDLENDVFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITY 200

Query: 198 ERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP---ILGGPPRQKPQNPFRG- 257
           E LP+FCY CG IGH  + C  +  +EE+  +G  LR  P     GG   +  +N   G 
Sbjct: 201 EFLPDFCYVCGRIGHTDKACLTKLAAEEQAPFGRELRYIPPKKKFGGESWRSQENRRSGG 260

Query: 258 ------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGK 317
                 GPW      GRG G R             RS+  +WR+ D G   E  R +G +
Sbjct: 261 GRSGGSGPWFSGGSGGRGVGGRT------------RSDALSWRKDDMG---EKTRGKGDE 320

Query: 318 VEVSGVNEEAPARGSDYSPGETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPE 358
            EV+             S  + P    + DK K   E        D+  AA  G GK  E
Sbjct: 321 EEVNSP-----------SKMDLPATHEKGDKAKKCLEDALAEMSQDEKDAAAGGSGKR-E 356

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BLAST of Lag0002375 vs. NCBI nr
Match: XP_021318626.1 (uncharacterized protein LOC110436290 [Sorghum bicolor])

HSP 1 Score: 102.8 bits (255), Expect = 9.0e-18
Identity = 90/287 (31.36%), Postives = 134/287 (46.69%), Query Frame = 0


Query: 141 LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERL 200
           LG  IG F +VD+ E+G +    LRI V IDI +PL RG+ V++G    E W   +YE L
Sbjct: 144 LGEKIGFFKEVDVGEDGTAVGRVLRIKVLIDIRKPLMRGITVKVGDPEREKWCSFAYEFL 203

Query: 201 PEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATPIL---GGPPRQKPQNPFRGGPW- 260
           P+FCY CG IGHI + C + S+S E   +   LR  P      G   ++   P   GPW 
Sbjct: 204 PDFCYTCGLIGHIDKHCPSPSESGEPQQFSRNLRFIPEKRRGEGTGERRSFGPKPRGPWL 263

Query: 261 GRGRGRRAAFQNFREDWSSGRSNRE--NWRRKDPGPDCENARKEGGKVEVSGVNEEAPAR 320
           G   G R +F +  + W S +S  +  NWR+       E + + G +V     + E   +
Sbjct: 264 GGSSGSRGSFDSRGDRWGSSKSGSDALNWRKSGE----EKSTETGDEV----TSPEKTLK 323

Query: 321 GSDYSPGETPTASF-----------RSDKGKVVEE--SDQNSAADRGKGKEPEDKGHIRV 380
           G +   G+T  A               DKG ++ E   +++   DR +G        +  
Sbjct: 324 GVEKEDGKTLGAKKPLLPQLEAPVPARDKGSLIVEKGGEEDMKKDRRRGTFK----RLEK 383

Query: 381 SLKNKGQNGEK---EYRQTVGIVIKDDSDGMEKSKGKTFDLKHPANT 406
           S   KG +GEK   E ++ + I  ++  DG++K K  T   K   NT
Sbjct: 384 SRAVKGDSGEKKQPEKKRKMDIDREEQEDGVKKVKA-TEGAKDSQNT 417

[Close]

BLAST of Lag0002375 vs. NCBI nr
Match: TXG48193.1 (hypothetical protein EZV62_027487 [Acer yangbiense])

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-17
Identity = 67/235 (28.51%), Postives = 102/235 (43.40%), Query Frame = 0


Query: 72  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGR 131
           E A V  I +D +++  ED+   ++ +V+T K +N E FK  + +IWN+ G+V ++  G 
Sbjct: 18  EDAAVHEITEDYIQDGDEDVDRCLVGKVLTGKKVNREAFKGLIEQIWNQFGQVEVELVGE 77

Query: 132 NTFL-------------------------------------------------------- 191
           NTF+                                                        
Sbjct: 78  NTFMFHFTNKEYRNKVWNRGPWLFGKSLIVLEKPKGPGDITKLKFNQADFWVQIHDIPIM 137

Query: 192 -------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKA 239
                  KW   L   IGE V++  E     G+  +R+ V++DI +PLKR L +++G   
Sbjct: 138 CMNQRTTKW---LAEYIGEVVEIPTESRECWGK-YVRVKVQVDITKPLKRWLRIKLGKYE 197

[Close]

BLAST of Lag0002375 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-17
Identity = 81/243 (33.33%), Postives = 113/243 (46.50%), Query Frame = 0


Query: 138 AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASY 197
           AIQ+G  +GEF++VDLE +  +    LR+ V+I+I +PL+RG+M+ +G  A+E W   +Y
Sbjct: 78  AIQIGEELGEFMEVDLENDEFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITY 137

Query: 198 ERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP---ILGGPPRQKPQNPFRG- 257
           E LP+FCY CG IGH  + C  +  + E+  +G  LR  P     GG   +  +N   G 
Sbjct: 138 EFLPDFCYVCGRIGHTDKACLTKLAAGEQAPFGRELRYIPPKKKFGGESWRSQENRRSGG 197

Query: 258 ------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGK 317
                 GPW      GRG G R             RS+  +WR+ D G       K  GK
Sbjct: 198 GRSGGSGPWFSGGSGGRGVGGRT------------RSDALSWRKDDMG------EKTSGK 257

Query: 318 VEVSGVNEEAPARGSDYSPGETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPE 358
            +   VN          S  + P    + DK K   E        D+  AA  G GK  E
Sbjct: 258 GDEEEVNSP--------SKMDLPATHEKGDKAKKCLEDALAEMSQDEKDAAAGGSGKR-E 293

[Close]

BLAST of Lag0002375 vs. NCBI nr
Match: TXG60307.1 (hypothetical protein EZV62_014880 [Acer yangbiense])

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-17
Identity = 61/195 (31.28%), Postives = 92/195 (47.18%), Query Frame = 0


Query: 85  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN- 144
           E+  ED++  ++ +V+  K +N E FK  + +IW+  G V I+    N F+ + I +G+ 
Sbjct: 31  EDGAEDVERCLVGKVLAGKKVNREAFKRIIEQIWSPFGHVEIELVSDNVFMFYFINIGSG 90

Query: 145 ----------------------------------SIGEFVDVDLEEEGGSGENTLRILVK 204
                                              IGE VD+   E     E  +R+ V+
Sbjct: 91  NIAQLAFNKADFWVQIHEIPILCMNRKTEKWLAEQIGEVVDIP-SESRECWEKYMRVKVR 150

Query: 205 IDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSE 240
           IDI +PLKR L +++G   E T V   YERLPEFC+ CG IGH     I +E    +   
Sbjct: 151 IDITKPLKRWLRLKLGKTEEVTRVSLKYERLPEFCFACGKIGHGIKVCIDEEARKMAVEG 210

[Close]

BLAST of Lag0002375 vs. ExPASy TrEMBL
Match: A0A2N9GHD2 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26712 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.7e-18
Identity = 58/198 (29.29%), Postives = 105/198 (53.03%), Query Frame = 0


Query: 56  AEEVADKLEKMKITIAERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMP 115
           AEE+A+  ++M+++ +E++  + +    ++++ ++ + ++L R++T +  N E FK  + 
Sbjct: 2   AEELAELCKRMRLSDSEKSN-LKLTTGKIQQSKKEAKYSLLFRLLTTRSFNGEAFKGTIR 61

Query: 116 KIWNKEGRVRIKPKGRNTFL----------KWAIQLGNSIGEFVDVDLEEEGGSGENTLR 175
            +W     + I+    N F+          +    +GN IG  ++VD+ E+G + +  LR
Sbjct: 62  SLWASPRSLTIRDIEDNLFMAIFTKGDDMERVGEDIGNHIGRLIEVDVPEKGFAWDRYLR 121

Query: 176 ILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESKSE 235
           I V++DI  PL RG ++      +  WV   YE LP FCY CG +GH   EC E      
Sbjct: 122 IRVELDITNPLLRGKILE-DDNGKPYWVDFRYEHLPIFCYRCGRVGHSGNECLEGRHSGG 181

Query: 236 EENL----YGEWLRATPI 239
           + N+    +G WLRA P+
Sbjct: 182 DPNVSTDRFGSWLRAVPV 197

[Close]

BLAST of Lag0002375 vs. ExPASy TrEMBL
Match: A0A5C7GU64 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027487 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-17
Identity = 67/235 (28.51%), Postives = 102/235 (43.40%), Query Frame = 0


Query: 72  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGR 131
           E A V  I +D +++  ED+   ++ +V+T K +N E FK  + +IWN+ G+V ++  G 
Sbjct: 18  EDAAVHEITEDYIQDGDEDVDRCLVGKVLTGKKVNREAFKGLIEQIWNQFGQVEVELVGE 77

Query: 132 NTFL-------------------------------------------------------- 191
           NTF+                                                        
Sbjct: 78  NTFMFHFTNKEYRNKVWNRGPWLFGKSLIVLEKPKGPGDITKLKFNQADFWVQIHDIPIM 137

Query: 192 -------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKA 239
                  KW   L   IGE V++  E     G+  +R+ V++DI +PLKR L +++G   
Sbjct: 138 CMNQRTTKW---LAEYIGEVVEIPTESRECWGK-YVRVKVQVDITKPLKRWLRIKLGKYE 197

[Close]

BLAST of Lag0002375 vs. ExPASy TrEMBL
Match: A0A5C7HT75 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014880 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-17
Identity = 61/195 (31.28%), Postives = 92/195 (47.18%), Query Frame = 0


Query: 85  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN- 144
           E+  ED++  ++ +V+  K +N E FK  + +IW+  G V I+    N F+ + I +G+ 
Sbjct: 31  EDGAEDVERCLVGKVLAGKKVNREAFKRIIEQIWSPFGHVEIELVSDNVFMFYFINIGSG 90

Query: 145 ----------------------------------SIGEFVDVDLEEEGGSGENTLRILVK 204
                                              IGE VD+   E     E  +R+ V+
Sbjct: 91  NIAQLAFNKADFWVQIHEIPILCMNRKTEKWLAEQIGEVVDIP-SESRECWEKYMRVKVR 150

Query: 205 IDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSE 240
           IDI +PLKR L +++G   E T V   YERLPEFC+ CG IGH     I +E    +   
Sbjct: 151 IDITKPLKRWLRLKLGKTEEVTRVSLKYERLPEFCFACGKIGHGIKVCIDEEARKMAVEG 210

[Close]

BLAST of Lag0002375 vs. ExPASy TrEMBL
Match: A0A1Z5S941 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347001 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-16
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 141 LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERL 200
           LGN IG  + VD E++G +    LRI VKIDI +PL RG+++      ++ W    YE L
Sbjct: 10  LGNRIGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYL 69

Query: 201 PEFCYGCGTIGHIQQECEAESKSEEE---NLYGEWLRATPIL---GGPPRQKPQNPFRGG 260
           P FCYGCG +GH+++EC  +S  EEE     +G+WLR TP      G  RQ+       G
Sbjct: 70  PNFCYGCGLLGHVEKEC--DSCVEEEVGFKQFGDWLRVTPTRWKGQGDQRQRWSEGGSSG 129

Query: 261 PWGRGRGRRAAFQNFREDWS 275
               GR R +   +F +D S
Sbjct: 130 SGKFGRSRESGKLSFAQDHS 147

[Close]

BLAST of Lag0002375 vs. ExPASy TrEMBL
Match: A0A5C7I3H2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_011067 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-16
Identity = 60/187 (32.09%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 66  MKITIAERAKVVAIEDDDL------EEATED----LQGAVLCRVITLKLINPEIFKTFMP 125
           M+  IA+  + +++ D+D+      EE   D    +   ++ +V++ K +N E FK  + 
Sbjct: 1   MESEIAKLYENLSLADEDVAIHEMPEEVHRDGVANVDRCLVGKVLSGKKVNIEAFKGLIE 60

Query: 126 KIWNKEGRVRIKPKGRNTFL--KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIM 185
           ++WN+ G V I+  G N F+  KW   L   +GE +++ +E +   G+  +R+ V I+I 
Sbjct: 61  QLWNQFGAVEIESLGHNIFITAKW---LAEQLGEVIEIPMEAKDCWGK-FMRVKVLIEIS 120

Query: 186 QPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESK----SEEENL 236
           +PLKR L +++        V   YERLP+FCY CG IGH+ ++C + E+K    S     
Sbjct: 121 KPLKRWLRLKLDKSDNIVLVGLKYERLPQFCYACGIIGHVIKDCLDTEAKTAALSGSTTR 180

[Close]

BLAST of Lag0002375 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 47.0 bits (110), Expect = 5.5e-05
Identity = 25/85 (29.41%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 141 LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERL 200
           + +++GE V +D  EE  S    +R+ V++D  +PL+    VR  S+ E   +   YE+L
Sbjct: 143 IASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASR-ERAMIGFEYEKL 202

Query: 201 PEFCYGCGTIGHIQQECEAESKSEE 226
              C  C  + H    C      EE
Sbjct: 203 QRVCTNCCRVNHQVSHCPYVVHQEE 226

The following BLAST results are available for this feature:

BLAST of Lag0002375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039827601.1	6.9e-18	33.74	uncharacterized protein LOC120689378 [Panicum virgatum]	[more]
XP_021318626.1	9.0e-18	31.36	uncharacterized protein LOC110436290 [Sorghum bicolor]	[more]
TXG48193.1	2.6e-17	28.51	hypothetical protein EZV62_027487 [Acer yangbiense]	[more]
XP_039815364.1	5.8e-17	33.33	uncharacterized protein LOC120678302 [Panicum virgatum]	[more]
TXG60307.1	7.6e-17	31.28	hypothetical protein EZV62_014880 [Acer yangbiense]	[more]

BLAST of Lag0002375 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GHD2	9.7e-18	29.29	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2671...	[more]
A0A5C7GU64	1.3e-17	28.51	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02748...	[more]
A0A5C7HT75	3.7e-17	31.28	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014880 PE=4 SV=1	[more]
A0A1Z5S941	1.1e-16	40.00	CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347...	[more]
A0A5C7I3H2	1.8e-16	32.09	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01106...	[more]

BLAST of Lag0002375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	5.5e-05	29.41	nucleic acid binding;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..417
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 429..475
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 136..298
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 170..218 e-value: 2.8E-12 score: 46.1
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 136..298
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 204..217 score: 9.372511

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002375.1	Lag0002375.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding