Lag0002350 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002350
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr4: 41944642 .. 41945241 (+)
RNA-Seq Expression	Lag0002350
Synteny	Lag0002350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAATGATGAAGGTTCTTCTTCAAAATCCATCTCCAACCAGCAAGATACTCCCATTCATCCCACCACCCCAATAGCAACTCCGACTGGAACCCCCATCCATAACCCACCTCAAAATCCCACCTCTGCTGTTCAACCCAACTTTTGCCCTCCTCAAAACCTAAATCGAAGTTTCCAGCCTCAAAATCCTAATCCTAATCCTCCCCTGTATGCTCCCTTCAATCCAAACACGCCTCCCCCTGGCTTTTATCCTTATCATTATCCACCCCAAACCTCTTATCCCCAGCCCATTTTTCCTCCGAATCAGCCGCAACAGCAGTTTCCTCGCCCAATGTTTCCTGCTCAACCTCCGCCTTTCCCACCACATCCAAATTTCTTCACACCCAATCCCTATCCTACTCTTCCACAACCGCTCAGTGTGAAGCTCAACGACACAAACTTCTTACTCTGGAAAAATCAGTTGCTGAATGCCGTACTCGCCAATGGGTTGTCCGGTTTTCTTGATGGCTCGATTCCAGCTCCTTCCCAATTTCTCGATCAGAATCGCACCCAACCAAACCCTGAGTATCTCGGCTGGGAGAGGTATAATCGTTTATAA

mRNA sequence

ATGACGAATGATGAAGGTTCTTCTTCAAAATCCATCTCCAACCAGCAAGATACTCCCATTCATCCCACCACCCCAATAGCAACTCCGACTGGAACCCCCATCCATAACCCACCTCAAAATCCCACCTCTGCTGTTCAACCCAACTTTTGCCCTCCTCAAAACCTAAATCGAAGTTTCCAGCCTCAAAATCCTAATCCTAATCCTCCCCTGTATGCTCCCTTCAATCCAAACACGCCTCCCCCTGGCTTTTATCCTTATCATTATCCACCCCAAACCTCTTATCCCCAGCCCATTTTTCCTCCGAATCAGCCGCAACAGCAGTTTCCTCGCCCAATGTTTCCTGCTCAACCTCCGCCTTTCCCACCACATCCAAATTTCTTCACACCCAATCCCTATCCTACTCTTCCACAACCGCTCAGTGTGAAGCTCAACGACACAAACTTCTTACTCTGGAAAAATCAGTTGCTGAATGCCGTACTCGCCAATGGGTTGTCCGGTTTTCTTGATGGCTCGATTCCAGCTCCTTCCCAATTTCTCGATCAGAATCGCACCCAACCAAACCCTGAGTATCTCGGCTGGGAGAGGTATAATCGTTTATAA

Coding sequence (CDS)

ATGACGAATGATGAAGGTTCTTCTTCAAAATCCATCTCCAACCAGCAAGATACTCCCATTCATCCCACCACCCCAATAGCAACTCCGACTGGAACCCCCATCCATAACCCACCTCAAAATCCCACCTCTGCTGTTCAACCCAACTTTTGCCCTCCTCAAAACCTAAATCGAAGTTTCCAGCCTCAAAATCCTAATCCTAATCCTCCCCTGTATGCTCCCTTCAATCCAAACACGCCTCCCCCTGGCTTTTATCCTTATCATTATCCACCCCAAACCTCTTATCCCCAGCCCATTTTTCCTCCGAATCAGCCGCAACAGCAGTTTCCTCGCCCAATGTTTCCTGCTCAACCTCCGCCTTTCCCACCACATCCAAATTTCTTCACACCCAATCCCTATCCTACTCTTCCACAACCGCTCAGTGTGAAGCTCAACGACACAAACTTCTTACTCTGGAAAAATCAGTTGCTGAATGCCGTACTCGCCAATGGGTTGTCCGGTTTTCTTGATGGCTCGATTCCAGCTCCTTCCCAATTTCTCGATCAGAATCGCACCCAACCAAACCCTGAGTATCTCGGCTGGGAGAGGTATAATCGTTTATAA

Protein sequence

MTNDEGSSSKSISNQQDTPIHPTTPIATPTGTPIHNPPQNPTSAVQPNFCPPQNLNRSFQPQNPNPNPPLYAPFNPNTPPPGFYPYHYPPQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL

Homology

[Close]

BLAST of Lag0002350 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-24
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 99  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNA 158
           FPP       P P F AQP      PN F+ NP+PTLPQPL+VKLND NFLLWKNQLLNA
Sbjct: 3   FPP-------PTPNFLAQP------PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNA 62

Query: 159 VLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           V+ANGL G+LDG+I  P QFLD ++ QPNP Y  WERYNRL
Sbjct: 63  VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRL 90

[Close]

BLAST of Lag0002350 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-14
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 114 PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVL 173
           PA PPP            P+P     +P P +P   QPL+VKL+D N+++WK QLLN V+
Sbjct: 13  PAPPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVI 72

Query: 174 ANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Sbjct: 73  ANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRL 111

[Close]

BLAST of Lag0002350 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-13
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 114 PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVL 173
           PA PPP            P+P     +P    P++ QPL+VKL+D N+++WK QLLN V+
Sbjct: 13  PAPPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVI 72

Query: 174 ANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Sbjct: 73  ANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRL 111

[Close]

BLAST of Lag0002350 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 90  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFL 149
           PQ   P PIF PN                         T   YP+L QPL++KL++TN  
Sbjct: 15  PQNINPTPIFSPN------------------------ITQANYPSLSQPLTIKLDETNLF 74

Query: 150 LWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           LWKNQLLN ++ANGL  F++G  P P++FLD  + Q NP ++ WER N L
Sbjct: 75  LWKNQLLNVIIANGLEDFIEGETPIPAKFLDDAQLQVNPLFIQWERTNIL 100

[Close]

BLAST of Lag0002350 vs. NCBI nr
Match: RVX04814.1 (hypothetical protein CK203_024917 [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 131 PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEY 190
           P P+L QPLS+KL++TN LLW NQL+N ++ANGL  F++     P ++LD  R Q NP++
Sbjct: 32  PSPSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKF 91

Query: 191 LGWERYNR 199
           + WER NR
Sbjct: 92  VQWERLNR 99

[Close]

BLAST of Lag0002350 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.1e-25
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 99  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNA 158
           FPP       P P F AQP      PN F+ NP+PTLPQPL+VKLND NFLLWKNQLLNA
Sbjct: 3   FPP-------PTPNFLAQP------PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNA 62

Query: 159 VLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           V+ANGL G+LDG+I  P QFLD ++ QPNP Y  WERYNRL
Sbjct: 63  VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRL 90

[Close]

BLAST of Lag0002350 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 114 PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVL 173
           PA PPP            P+P     +P P +P   QPL+VKL+D N+++WK QLLN V+
Sbjct: 13  PAPPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVI 72

Query: 174 ANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Sbjct: 73  ANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRL 111

[Close]

BLAST of Lag0002350 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 114 PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVL 173
           PA PPP            P+P     +P    P++ QPL+VKL+D N+++WK QLLN V+
Sbjct: 13  PAPPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVI 72

Query: 174 ANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Sbjct: 73  ANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRL 111

[Close]

BLAST of Lag0002350 vs. ExPASy TrEMBL
Match: A0A438F8X3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2675 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 90  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFL 149
           PQ   P PIF PN                         T   YP+L QPL++KL++TN  
Sbjct: 15  PQNINPTPIFSPN------------------------ITQANYPSLSQPLTIKLDETNLF 74

Query: 150 LWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL 200
           LWKNQLLN ++ANGL  F++G  P P++FLD  + Q NP ++ WER N L
Sbjct: 75  LWKNQLLNVIIANGLEDFIEGETPIPAKFLDDAQLQVNPLFIQWERTNIL 100

[Close]

BLAST of Lag0002350 vs. ExPASy TrEMBL
Match: A0A438J785 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.8e-12
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 131 PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEY 190
           P P+L QPLS+KL++TN LLW NQL+N ++ANGL  F++     P ++LD  R Q NP++
Sbjct: 32  PSPSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKF 91

Query: 191 LGWERYNR 199
           + WER NR
Sbjct: 92  VQWERLNR 99

The following BLAST results are available for this feature:

BLAST of Lag0002350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	1.9e-24	64.36	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
GFY85402.1	3.9e-14	48.48	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]
GFZ12741.1	3.3e-13	47.47	UBX domain-containing protein [Actinidia rufa]	[more]
RVW56403.1	5.7e-13	41.82	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVX04814.1	1.8e-11	51.47	hypothetical protein CK203_024917 [Vitis vinifera]	[more]

BLAST of Lag0002350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	9.1e-25	64.36	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A7J0EGI5	1.9e-14	48.48	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]
A0A7J0GPN0	1.6e-13	47.47	UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4...	[more]
A0A438F8X3	2.7e-13	41.82	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438J785	8.8e-12	51.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1	[more]

BLAST of Lag0002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 69..90 score: 36.36 coord: 57..69 score: 30.77 coord: 93..109 score: 27.06 coord: 17..33 score: 41.18 coord: 121..138 score: 41.11
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..96
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 139..175 e-value: 7.5E-7 score: 28.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002350.1	Lag0002350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding