Lag0002345 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002345
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr4: 41906922 .. 41907343 (-)
RNA-Seq ExpressionLag0002345
SyntenyLag0002345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAGAAGATCAGTGGATACTTATGAGTACATGGCAGGATTTCGATCTTATCTGTGTAGGAGCTTGGGCGATATGGAATGATAGAAATCATTTGGTGTATAATCGGCCTATTCCTACCATTGAGGAACGATGCACGTGGATTCTTGATTATATTGCCGATTATCGCAAGGCTAATCGACCGAACCCCAAGTCTATAGTGTTAGTGGAGGATTATTATGAATTGATAGTCCAGGGGAAGATATTATCATGAATACGGATGCAGCCTACGATTTGATAAATCGTAAATCTGGTCTTGGAATTGTGCTTAGAGATAAGCAAGGTACTTTGCTAGCAGGGTCATCGTCGTCTTCCAATATTTGTATCACTCCAATTTGTGCAAAAGCGGCGGCTATTCTTGAAGGATTACGTTTTGCCTGA

mRNA sequence

ATGGATATAGAAGATCAGTGGATACTTATGAGTACATGGCAGGATTTCGATCTTATCTGTGTAGGAGCTTGGGCGATATGGAATGATAGAAATCATTTGGTGTATAATCGGCCTATTCCTACCATTGAGGAACGATGCACGTGGATTCTTGATTATATTGCCGATTATCGCAAGGCTAATCGACCGAACCCCAAGTCTATAGTAGATAAGCAAGGTACTTTGCTAGCAGGGTCATCGTCGTCTTCCAATATTTGTATCACTCCAATTTGTGCAAAAGCGGCGGCTATTCTTGAAGGATTACGTTTTGCCTGA

Coding sequence (CDS)

ATGGATATAGAAGATCAGTGGATACTTATGAGTACATGGCAGGATTTCGATCTTATCTGTGTAGGAGCTTGGGCGATATGGAATGATAGAAATCATTTGGTGTATAATCGGCCTATTCCTACCATTGAGGAACGATGCACGTGGATTCTTGATTATATTGCCGATTATCGCAAGGCTAATCGACCGAACCCCAAGTCTATAGTAGATAAGCAAGGTACTTTGCTAGCAGGGTCATCGTCGTCTTCCAATATTTGTATCACTCCAATTTGTGCAAAAGCGGCGGCTATTCTTGAAGGATTACGTTTTGCCTGA

Protein sequence

MDIEDQWILMSTWQDFDLICVGAWAIWNDRNHLVYNRPIPTIEERCTWILDYIADYRKANRPNPKSIVDKQGTLLAGSSSSSNICITPICAKAAAILEGLRFA
Homology
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BLAST of Lag0002345 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 15  DFDLICVGAWAIWNDRNHLVYNRPIPTIEERCTWILDYIADYRKANRPN 64
           DFDL+ VG WAIWNDRN +   R IP  + R  WIL Y+ D++  + P+
Sbjct: 84  DFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPS 132

The following BLAST results are available for this feature:
BLAST of Lag0002345 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145060.11.7e-0548.98uncharacterized protein LOC111014578 [Momordica charantia][more]
BLAST of Lag0002345 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002345.1Lag0002345.1mRNA