Lag0002316 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002316
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein KINESIN LIGHT CHAIN-RELATED 1
Location	chr4: 41596596 .. 41597787 (+)
RNA-Seq Expression	Lag0002316
Synteny	Lag0002316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAATTTGTGGACAAACTGCCTCAAATTTCTTCCAGAAAGGGAAAAGTCGAAGAAAACCCCGAGCTGGAGGAGGCCTTCAACTCTGCAGAGACTGTTGATGAAATGCTCAAGGTGTTTAAGGACATGGGGTCCGCTTTTGAGGAGAAGGGTCTTGGATTCGCTTCCATGAGAATTGGTCTGAAACTTGACCAAGAAGGTGAGGATCCTGAAAATACCTCTGTCATATGCTAATAGAACTTTTAAAACTCTGTCATGACATTGCAATTAATGGGTTCTGTTTCATTATATCTTGAAAAGGTTCAATGACAATTTGGGGCACCAGAATAGTGCTAATTGGATACTGGGTTAGTTAGAGGAGAAGGGTTTTAGTGCTGAGAGTTCATGTTGAATCCAAAAGCTTAAGCTGAAAAATGGGGAGAAGAGAAGGAACTCTTTTTAATCTTTGGAAGTGTTTAAAAATCAGGGAGCTTACCTTGGAGAAGGATGGAAGAGAATTGGGGAACGTAAATCGCGATATAAGGATGTGCTTCCATTTTGTATGAAAGCATTGGAGATGCATAAGAAGCAATTAGGACACAATTCAGTTGATGTTGCCTATGATAGGAGACTTTTTAGGGGGTGATTTATGGTGGATTGGAAGAACATGAAAAGGCATTGGAGCATAATGATCTCAAGGGAAACAAATTTCATTGATAAATGAAATAAAACGAAGTAAAAAACTCCAACACCTAAAAACCTGAAAAATAATAAAATCTATAAAGTTGTCAAAAGATAAGAAAGAGACTCTGAAGATACGTTCATTCCTTTCGCCCCAAAGAAACCAGAAGAAGGCCCTATTAAGAGCAAGTTGATCTTCTTCACTCCATAGAAAGGATGTCCCACAAAAATGGAGGCAAGAACATCATAAATGTTGTTTGGTAAAGTCAAGGACCAACCAAAGACATGAAAGATTGTTGACCAATATTGAGAAGCAAAGACGCAGTGAGAAAATAAATGACATGCATCTTCCGAGGCAGAACAACACATAACACACCAAGATATTGTTCAAACATACAGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGTTGTTCAACATACAGATTGAAGCAGTGAAACTCAGGCAGTGA

mRNA sequence

ATGTTGAAATTTGTGGACAAACTGCCTCAAATTTCTTCCAGAAAGGGAAAAGTCGAAGAAAACCCCGAGCTGGAGGAGGCCTTCAACTCTGCAGAGACTGTTGATGAAATGCTCAAGGTGTTTAAGGACATGGGGTCCGCTTTTGAGGAGAAGGGTCTTGGATTCGCTTCCATGAGAATTGGTCTGAAACTTGACCAAGAAGGTTCAATGACAATTTGGGGCACCAGAATAGTGCTAATTGGATACTGGGGAGCTTACCTTGGAGAAGGATGGAAGAGAATTGGGGAACGTAAATCGCGATATAAGGATGTGCTTCCATTTTGTATGAAAGCATTGGAGATGCATAAGAAGCAATTAGGACACAATTCAGTTGATGTTGCCTATGATAGGAGACTTTTTAGGGGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGTTGTTCAACATACAGATTGAAGCAGTGAAACTCAGGCAGTGA

Coding sequence (CDS)

ATGTTGAAATTTGTGGACAAACTGCCTCAAATTTCTTCCAGAAAGGGAAAAGTCGAAGAAAACCCCGAGCTGGAGGAGGCCTTCAACTCTGCAGAGACTGTTGATGAAATGCTCAAGGTGTTTAAGGACATGGGGTCCGCTTTTGAGGAGAAGGGTCTTGGATTCGCTTCCATGAGAATTGGTCTGAAACTTGACCAAGAAGGTTCAATGACAATTTGGGGCACCAGAATAGTGCTAATTGGATACTGGGGAGCTTACCTTGGAGAAGGATGGAAGAGAATTGGGGAACGTAAATCGCGATATAAGGATGTGCTTCCATTTTGTATGAAAGCATTGGAGATGCATAAGAAGCAATTAGGACACAATTCAGTTGATGTTGCCTATGATAGGAGACTTTTTAGGGGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGTTGTTCAACATACAGATTGAAGCAGTGAAACTCAGGCAGTGA

Protein sequence

MLKFVDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKLDQEGSMTIWGTRIVLIGYWGAYLGEGWKRIGERKSRYKDVLPFCMKALEMHKKQLGHNSVDVAYDRRLFRGLEQNELPQKVLKNWGLKSDWHRRTPNSRMLFNIQIEAVKLRQ

Homology

[Close]

BLAST of Lag0002316 vs. NCBI nr
Match: XP_028056057.1 (protein KINESIN LIGHT CHAIN-RELATED 1 isoform X2 [Camellia sinensis])

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-29
Identity = 90/208 (43.27%), Postives = 121/208 (58.17%), Query Frame = 0


Query: 5   VDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKL 64
           VD+ P ISSR+ K++E  +L+EAF SA+T ++MLK FKDM ++F+E+ LG A +++GLKL
Sbjct: 87  VDQQPPISSRQRKIKERSQLDEAFESAKTTEDMLKAFKDMEASFDERELGLACLKLGLKL 146

Query: 65  DQE------GSMTIWGTRIVLIGYWGAYLGEGWKRIGERKSR------------------ 124
           DQE       S T  G R   +G     L +  K   E+ SR                  
Sbjct: 147 DQEVQLELANSKTAMGRREEALGNLRNCL-DIKKMTLEKNSREIGNANRDLAEAYVAVLN 206

Query: 125 YKDVLPFCMKALEMHKKQLGHNSVDVAYDRRLF-----------RGLEQNELPQKVLKNW 178
           +K+ LPFC+KALE+HK QLG+NSV+VA+DRRL            + LEQN+L QKVLKNW
Sbjct: 207 FKEALPFCLKALEIHKGQLGNNSVEVAHDRRLLGVIYTGLEEHEKALEQNQLSQKVLKNW 266

[Close]

BLAST of Lag0002316 vs. NCBI nr
Match: XP_038899312.1 (protein KINESIN LIGHT CHAIN-RELATED 1 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 99/264 (37.50%), Postives = 121/264 (45.83%), Query Frame = 0


Query: 5   VDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKL 64
           V+K PQISSR+ KV+E  ELEEAF SA+TVDEM+K FKDM SAFEE+ LG AS++IGLKL
Sbjct: 74  VEKRPQISSRQRKVKEKSELEEAFESADTVDEMVKAFKDMESAFEERDLGLASLKIGLKL 133

Query: 65  DQEG----SMTIWGTR--------------------IVLIGYWG----------AYLGEG 124
           DQEG    ++ ++  R                    + L+G              YL   
Sbjct: 134 DQEGEDPENILLYANRALKALDKDVNGNPSLPVAMTLQLMGSVNYSLKRFSDSLGYLNRA 193

Query: 125 WKRIG---------------------------------------------------ERKS 155
            + +G                                                   E+ S
Sbjct: 194 NRILGQLVEKGFSAEDVRPVLHAVQLELANVKTAMGRREEALSNLRKCLEIKELTLEKDS 253

[Close]

BLAST of Lag0002316 vs. NCBI nr
Match: XP_022143612.1 (protein KINESIN LIGHT CHAIN-RELATED 1 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-26
Identity = 96/266 (36.09%), Postives = 118/266 (44.36%), Query Frame = 0


Query: 5   VDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKL 64
           V+K PQISSR+ K++E  ELEEAF SA TVDEML  FKDM SAFEE+ LG AS++IGLKL
Sbjct: 71  VEKRPQISSRQRKIKEKSELEEAFESANTVDEMLSAFKDMESAFEERDLGLASLKIGLKL 130

Query: 65  DQEG----SMTIWGTRIV-----------------------------------LIGYWG- 124
           DQEG       ++ +R +                                    +GY   
Sbjct: 131 DQEGEDPEKTLLYASRALKALDNDDNGGKPSLLVAMTLQLMGSVNYSLKKFSDSLGYLNR 190

Query: 125 ----------------------------------AYLGEGWKRIG-------------ER 155
                                               +G   + +G             E+
Sbjct: 191 ANRVLSQLEEKGFSAAEDIRPVLHAVQLELANVKTAMGRREEALGNLRKCLEIKELTLEK 250

[Close]

BLAST of Lag0002316 vs. NCBI nr
Match: KAG7014584.1 (Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-26
Identity = 96/264 (36.36%), Postives = 118/264 (44.70%), Query Frame = 0


Query: 5   VDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKL 64
           V+K PQISSR+ K +E  ELEEAF SA TVDEM+K FKDM S FEE+ LG AS++IGLKL
Sbjct: 84  VEKRPQISSRQRKFKEKSELEEAFESANTVDEMVKAFKDMESTFEERDLGLASLKIGLKL 143

Query: 65  DQEG----SMTIWGTR--------------------IVLIGYWG----------AYLGEG 124
           +QE      + ++ TR                    + L+G              YL   
Sbjct: 144 EQEDEDPEKILVYATRALKALDKDDNGKPSLPVAMTLQLLGSVNYSLKRFSDSLGYLNRA 203

Query: 125 WKRIG---------------------------------------------------ERKS 155
            + +G                                                   E+ S
Sbjct: 204 NRILGQLEESGFSAEGIRPVLHAVQLELANVKTAMGRREEALASLRKCLEIKELTLEKDS 263

[Close]

BLAST of Lag0002316 vs. NCBI nr
Match: KAG6576067.1 (Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-26
Identity = 96/264 (36.36%), Postives = 118/264 (44.70%), Query Frame = 0


Query: 5   VDKLPQISSRKGKVEENPELEEAFNSAETVDEMLKVFKDMGSAFEEKGLGFASMRIGLKL 64
           V+K PQISSR+ K +E  ELEEAF SA TVDEM+K FKDM S FEE+ LG AS++IGLKL
Sbjct: 74  VEKRPQISSRQRKFKEKSELEEAFESANTVDEMVKAFKDMESTFEERDLGLASLKIGLKL 133

Query: 65  DQEG----SMTIWGTR--------------------IVLIGYWG----------AYLGEG 124
           +QE      + ++ TR                    + L+G              YL   
Sbjct: 134 EQEDEDPEKILVYATRALKALDKDDNGKPSLPVAMTLQLLGSVNYSLKRFSDSLGYLNRA 193

Query: 125 WKRIG---------------------------------------------------ERKS 155
            + +G                                                   E+ S
Sbjct: 194 NRILGQLEESGFSAEGIRPVLHAVQLELANVKTAMGRREEALASLRKCLEIKELTLEKDS 253

The following BLAST results are available for this feature:

BLAST of Lag0002316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028056057.1	2.9e-29	43.27	protein KINESIN LIGHT CHAIN-RELATED 1 isoform X2 [Camellia sinensis]	[more]
XP_038899312.1	2.1e-27	37.50	protein KINESIN LIGHT CHAIN-RELATED 1 [Benincasa hispida]	[more]
XP_022143612.1	5.2e-26	36.09	protein KINESIN LIGHT CHAIN-RELATED 1 [Momordica charantia]	[more]
KAG7014584.1	8.8e-26	36.36	Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6576067.1	8.8e-26	36.36	Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Lag0002316 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47459	KINESIN LIGHT CHAIN-RELATED	coord: 97..154 coord: 7..69
None	No IPR available	PANTHER	PTHR47459:SF1	KINESIN LIGHT CHAIN-RELATED	coord: 7..69
None	No IPR available	PANTHER	PTHR47459:SF1	KINESIN LIGHT CHAIN-RELATED	coord: 97..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002316.1	Lag0002316.1	mRNA