Lag0002269 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002269
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 41130623 .. 41132111 (-)
RNA-Seq Expression	Lag0002269
Synteny	Lag0002269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGTAGGCGCCGTCTGTGTGAAAGAGTGCTGGCCAGTTCAGACCGCGCATCGGTGGTGGTCTGCAGGAGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTATGAGTAGAAAGCGCCGAACCAGACTGGGGTTGACCTCGGTATAGAAAAGGCCGACCCTAACTTCGGAGATGGTTGTAAGGTTCCGTGTGCCCACGATGTTGTGCACCTAACCTAAGTGGACAACCAACAGAAGAACTGGAGTTTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAAGGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACCAGCATCGAGAAGTTAGAGGAAAAGGACGCCGGGTAGAAGATAGAGGCCAGATCCGACATGAGCACTCCTCGACCGATAACCGAGGTCAAGCAGAAGCCCAATCGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGGTACGTACACAGGGAATAATGACCGGAAAAAGTCAGAAGCTCGGGCAAAGCCCGAGGTCGAGCAGGGACAAAAGGGGCGAGAGCTATCCAAATGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTTCGCGCTAACCCCCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCACGAAAGTCAATCGGTTCGTTTAAAGAATTGGCCTGAGCGTTTGTTACGCAATTCCTCGGGGCCCAGAGCCGACAGAAGCCTCAGATCAATTTGCTAGCAGTAAAGCAGGGGCCCCGAGAAAGCTTGAAGGATTATATTAACAGATTTAGTAACGAAGCTTTGCAGGTAGAAGGCTATGACGATGGGTTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATAAAATACTGCTCAACTCGATCGGTGAGAGACAGCCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGTCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAAAGAGGCCGAAGCCGTCAAAAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTTTGACAGGTGTACACCACTACCAACTCCACTTGAACAGGCCCTAGCCACAATACAGGATACAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAAGAGGAATCAGAACAAGTACTGCACGTTCCACGCAGACCACGGTCACACAACCCGGATAGAAGCCCTAATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCTAGAGGCCATTACCAACAGGTCAAGGTAAAGGCGGTGTCAACCCACCGCTCGAGTTACATACAATTTTAGGAGGACCATCCGGTCGAGAGTCAGGCAGAAAGCGAAAGGTGGAGATTCGAAAGGCACAACGAGAGCTCGAAGGGCAAGAAGTTTACAGCAGCTTGAAGAGAGGCTCGGGAAATTCCTAG

mRNA sequence

ATGAACAGTAGGCGCCGTCTGTGTGAAAGAGTGCTGGCCAGTTCAGACCGCGCATCGGTGGTGGTCTGCAGGAGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGAAGAACTGGAGTTTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAAGGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACCAGCATCGAGAAGTTAGAGGAAAAGGACGCCGGGTAGAAGATAGAGGCCAGATCCGACATGAGCACTCCTCGACCGATAACCGAGGTCAAGCAGAAGCCCAATCGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGATTTAGTAACGAAGCTTTGCAGGTAGAAGGCTATGACGATGGGTTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATAAAATACTGCTCAACTCGATCGGTGAGAGACAGCCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGTCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAAAGAGGCCGAAGCCGTCAAAAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTCAAGGTAAAGGCGGTGTCAACCCACCGCTCGAGTTACATACAATTTTAGGAGGACCATCCGGTCGAGAGTCAGGCAGAAAGCGAAAGGTGGAGATTCGAAAGGCACAACGAGAGCTCGAAGGGCAAGAAGTTTACAGCAGCTTGAAGAGAGGCTCGGGAAATTCCTAG

Coding sequence (CDS)

ATGAACAGTAGGCGCCGTCTGTGTGAAAGAGTGCTGGCCAGTTCAGACCGCGCATCGGTGGTGGTCTGCAGGAGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGAAGAACTGGAGTTTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAAGGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACCAGCATCGAGAAGTTAGAGGAAAAGGACGCCGGGTAGAAGATAGAGGCCAGATCCGACATGAGCACTCCTCGACCGATAACCGAGGTCAAGCAGAAGCCCAATCGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGATTTAGTAACGAAGCTTTGCAGGTAGAAGGCTATGACGATGGGTTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATAAAATACTGCTCAACTCGATCGGTGAGAGACAGCCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGTCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAAAGAGGCCGAAGCCGTCAAAAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTCAAGGTAAAGGCGGTGTCAACCCACCGCTCGAGTTACATACAATTTTAGGAGGACCATCCGGTCGAGAGTCAGGCAGAAAGCGAAAGGTGGAGATTCGAAAGGCACAACGAGAGCTCGAAGGGCAAGAAGTTTACAGCAGCTTGAAGAGAGGCTCGGGAAATTCCTAG

Protein sequence

MNSRRRLCERVLASSDRASVVVCRRIGFRNQKETSEELEFVPLTSEEMLRSKQKERESREVSVSDQHREVRGKGRRVEDRGQIRHEHSSTDNRGQAEAQSQKDPQKFAAKDSVRFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLRSKQEEKEAEAVKSSPRPMAEADQRLGSLGVVRNQKPGQGKGGVNPPLELHTILGGPSGRESGRKRKVEIRKAQRELEGQEVYSSLKRGSGNS

Homology

[Close]

BLAST of Lag0002269 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-07
Identity = 63/228 (27.63%), Postives = 92/228 (40.35%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  +L+A +SG++D+ L  S G+R P T++E ++RAQRY+S  E   
Sbjct: 296 RFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFY 355

Query: 174 SKQ-----------------------EEKEAEAVKSSPRP---------------MAEAD 233
           SK+                       E+++  + K  PR                M   D
Sbjct: 356 SKREPDGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKD 415

Query: 234 QRLGSL--------------------------------------GVVRN----------Q 256
           QRL                                         G++R           +
Sbjct: 416 QRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPK 475

[Close]

BLAST of Lag0002269 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-05
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  ALIA +SG++D+ L+ S G+R P T+ E ++RAQ+Y+S  EL+ 
Sbjct: 112 RFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIH 171

Query: 174 SKQEEKEAEAVKSSPR 190
             ++ +   A  S+ R
Sbjct: 172 LSRDLERERANYSTKR 187

[Close]

BLAST of Lag0002269 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 35/101 (34.65%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           R++NE  QV+GYDDG AL  ++ GL+   L  S+ +R P +Y+E + RA++Y + EE  +
Sbjct: 293 RYNNEITQVDGYDDGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYANAEERFK 352

Query: 174 SKQEEKEAEAVKSSPRPMAEADQRL--GSLGVVRNQ-KPGQ 212
           ++ +EK  E+ K   +   + ++R+      + RNQ +PG+
Sbjct: 353 NRNQEK-GESTKGKKKKDDQRERRVVRPDQSLRRNQFRPGE 392

[Close]

BLAST of Lag0002269 vs. NCBI nr
Match: XP_022150104.1 (uncharacterized protein LOC111018365 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELL- 173
           RF+ E LQVEG  D  +L+A +SG++D+ L  S  ++ P T++E ++RAQRY+S  E   
Sbjct: 60  RFNEEKLQVEGLTDTVSLLAFMSGVRDEHLSFSFRKKTPSTFSEELSRAQRYMSAGEFFY 119

Query: 174 ----------------------RSKQEEKEAEAVKSSPRPM---------AEADQ----- 233
                                 RS+ E+++  + K  P+            E D      
Sbjct: 120 SKREPDEKRTDQKRERSGDKPPRSRWEKRDRSSQKDPPQKFEKYTPTTVPLEQDHGHATQ 179

Query: 234 -------------RLGSL-GVVRNQKPGQ-GKGGVNPPLELHTILGGPSGRESGRKRKVE 256
                        R+G L   V + K  Q G+   +P  E+ TI+GG   RESGRK K +
Sbjct: 180 DCFDLKEEVKGLIRMGYLKEYVEDSKATQNGESDKSPAREIRTIIGGLIERESGRKIKAD 239

[Close]

BLAST of Lag0002269 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-05
Identity = 58/228 (25.44%), Postives = 89/228 (39.04%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  +L+A I G++D+ L  S G+R P T++E ++RAQRY+S  E   
Sbjct: 121 RFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRYMSAGEFFY 180

Query: 174 SKQE----------------------EKEAEAVKSSP----------------------- 233
           SK+E                      EK   + +  P                       
Sbjct: 181 SKRESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKN 240

Query: 234 RPMAEADQRLGSLGVVRN-----------------------------------------Q 256
           + + +  +R+ +    R+                                         +
Sbjct: 241 QRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPK 300

[Close]

BLAST of Lag0002269 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 63/228 (27.63%), Postives = 92/228 (40.35%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  +L+A +SG++D+ L  S G+R P T++E ++RAQRY+S  E   
Sbjct: 296 RFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFY 355

Query: 174 SKQ-----------------------EEKEAEAVKSSPRP---------------MAEAD 233
           SK+                       E+++  + K  PR                M   D
Sbjct: 356 SKREPDGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKD 415

Query: 234 QRLGSL--------------------------------------GVVRN----------Q 256
           QRL                                         G++R           +
Sbjct: 416 QRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPK 475

[Close]

BLAST of Lag0002269 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-06
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  ALIA +SG++D+ L+ S G+R P T+ E ++RAQ+Y+S  EL+ 
Sbjct: 112 RFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIH 171

Query: 174 SKQEEKEAEAVKSSPR 190
             ++ +   A  S+ R
Sbjct: 172 LSRDLERERANYSTKR 187

[Close]

BLAST of Lag0002269 vs. ExPASy TrEMBL
Match: A0A6J1D911 (uncharacterized protein LOC111018365 OS=Momordica charantia OX=3673 GN=LOC111018365 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELL- 173
           RF+ E LQVEG  D  +L+A +SG++D+ L  S  ++ P T++E ++RAQRY+S  E   
Sbjct: 60  RFNEEKLQVEGLTDTVSLLAFMSGVRDEHLSFSFRKKTPSTFSEELSRAQRYMSAGEFFY 119

Query: 174 ----------------------RSKQEEKEAEAVKSSPRPM---------AEADQ----- 233
                                 RS+ E+++  + K  P+            E D      
Sbjct: 120 SKREPDEKRTDQKRERSGDKPPRSRWEKRDRSSQKDPPQKFEKYTPTTVPLEQDHGHATQ 179

Query: 234 -------------RLGSL-GVVRNQKPGQ-GKGGVNPPLELHTILGGPSGRESGRKRKVE 256
                        R+G L   V + K  Q G+   +P  E+ TI+GG   RESGRK K +
Sbjct: 180 DCFDLKEEVKGLIRMGYLKEYVEDSKATQNGESDKSPAREIRTIIGGLIERESGRKIKAD 239

[Close]

BLAST of Lag0002269 vs. ExPASy TrEMBL
Match: A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-06
Identity = 58/228 (25.44%), Postives = 89/228 (39.04%), Query Frame = 0


Query: 114 RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISVEELLR 173
           RF+ E LQVEG  D  +L+A I G++D+ L  S G+R P T++E ++RAQRY+S  E   
Sbjct: 121 RFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRYMSAGEFFY 180

Query: 174 SKQE----------------------EKEAEAVKSSP----------------------- 233
           SK+E                      EK   + +  P                       
Sbjct: 181 SKRESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKN 240

Query: 234 RPMAEADQRLGSLGVVRN-----------------------------------------Q 256
           + + +  +R+ +    R+                                         +
Sbjct: 241 QRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPK 300

[Close]

BLAST of Lag0002269 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 110 KDSV-RFSNEALQVEGYDDGFALIAVISGLQDKILLNSIGERQPRTYAEFMTRAQRYISV 169
           KD V RF+ E LQVEG  D   L+  ISG++D+ L+ S G+R   T++E  +RAQ Y+SV
Sbjct: 107 KDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSV 166

Query: 170 EELLRSKQEEK 180
            EL+ SK++ K
Sbjct: 167 GELIHSKRDPK 177

The following BLAST results are available for this feature:

BLAST of Lag0002269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	2.1e-07	27.63	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022158344.1	1.2e-05	43.42	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_024041095.1	1.5e-05	34.65	uncharacterized protein LOC112098853 [Citrus clementina]	[more]
XP_022150104.1	1.5e-05	29.38	uncharacterized protein LOC111018365 [Momordica charantia]	[more]
XP_022142767.1	2.0e-05	25.44	uncharacterized protein LOC111012805 [Momordica charantia]	[more]

BLAST of Lag0002269 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	1.0e-07	27.63	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DZ49	5.6e-06	43.42	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D911	7.4e-06	29.38	uncharacterized protein LOC111018365 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CNT2	9.6e-06	25.44	uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1D3B7	1.3e-05	47.89	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Lag0002269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002269.1	Lag0002269.1	mRNA