Lag0002255 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002255
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutaredoxin
Location	chr4: 40964232 .. 40964627 (+)
RNA-Seq Expression	Lag0002255
Synteny	Lag0002255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCATTACCAGCCAGAGCGATCATGGGACTACTACATGCCGCCCACGGCGGCGACGGCGGCGGCGTCCAGAGACCCAGTGGACCGAGTGGTCCGGCTGGCGGCGGAGAGCGCGGTGGTGATATTCAGCGTCAGCAGCTGCTGCATGTGCCACGCCCTGAAGCGGCTCCTCTGCGGAATGGGAGTGAGCCCGACGGTGTACGAGCTCGACCACGATCCCAGAGGAAAGGACATTGAAAGGGCTTTGATGAGGCTCGTCGGAGCAGCCTCGCCGCCGGTGCCGGTGGTCTTCATCGGCGGGAAGCTGGTGGGGTCCATGGACAGAGTTATGGCTTCTCATATCAATGGCACTTTAGTCCCTCTTCTCAAGGAAGCTGGGGCCTTGTGGCTTTAG

mRNA sequence

ATGATGCATTACCAGCCAGAGCGATCATGGGACTACTACATGCCGCCCACGGCGGCGACGGCGGCGGCGTCCAGAGACCCAGTGGACCGAGTGGTCCGGCTGGCGGCGGAGAGCGCGGTGGTGATATTCAGCGTCAGCAGCTGCTGCATGTGCCACGCCCTGAAGCGGCTCCTCTGCGGAATGGGAGTGAGCCCGACGGTGTACGAGCTCGACCACGATCCCAGAGGAAAGGACATTGAAAGGGCTTTGATGAGGCTCGTCGGAGCAGCCTCGCCGCCGGTGCCGGTGGTCTTCATCGGCGGGAAGCTGGTGGGGTCCATGGACAGAGTTATGGCTTCTCATATCAATGGCACTTTAGTCCCTCTTCTCAAGGAAGCTGGGGCCTTGTGGCTTTAG

Coding sequence (CDS)

ATGATGCATTACCAGCCAGAGCGATCATGGGACTACTACATGCCGCCCACGGCGGCGACGGCGGCGGCGTCCAGAGACCCAGTGGACCGAGTGGTCCGGCTGGCGGCGGAGAGCGCGGTGGTGATATTCAGCGTCAGCAGCTGCTGCATGTGCCACGCCCTGAAGCGGCTCCTCTGCGGAATGGGAGTGAGCCCGACGGTGTACGAGCTCGACCACGATCCCAGAGGAAAGGACATTGAAAGGGCTTTGATGAGGCTCGTCGGAGCAGCCTCGCCGCCGGTGCCGGTGGTCTTCATCGGCGGGAAGCTGGTGGGGTCCATGGACAGAGTTATGGCTTCTCATATCAATGGCACTTTAGTCCCTCTTCTCAAGGAAGCTGGGGCCTTGTGGCTTTAG

Protein sequence

MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALWL

Homology

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BLAST of Lag0002255 vs. NCBI nr
Match: NP_001295802.1 (glutaredoxin-C1-like [Cucumis sativus] >AGX01499.1 glutaredoxin [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCG 60
           MMHYQ ERSW+YYMP    TA+ASRDPVDRV+RLAAESAVVIFSVSSCCMCHALKRLLCG
Sbjct: 1   MMHYQAERSWEYYMP---VTASASRDPVDRVIRLAAESAVVIFSVSSCCMCHALKRLLCG 60

Query: 61  MGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120
           MGVSPTVYELDHDPRGKDIERALMRLVGA SPPVPVVFIGGKLVGSMDRVMASHINGTLV
Sbjct: 61  MGVSPTVYELDHDPRGKDIERALMRLVGATSPPVPVVFIGGKLVGSMDRVMASHINGTLV 120

Query: 121 PLLKEAGALWL 132
           PLLKEAGALWL
Sbjct: 121 PLLKEAGALWL 128

[Close]

BLAST of Lag0002255 vs. NCBI nr
Match: XP_038875997.1 (glutaredoxin-C1-like [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCG 60
           MM YQ ERSW+YYMP TA  AAA+RDPVDRV+RLAAESAVVIFSVSSCCMCHALKRLLCG
Sbjct: 1   MMRYQAERSWEYYMPATA--AAAARDPVDRVIRLAAESAVVIFSVSSCCMCHALKRLLCG 60

Query: 61  MGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120
           MGVSPTVYELDHDPRGK+IERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV
Sbjct: 61  MGVSPTVYELDHDPRGKEIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120

Query: 121 PLLKEAGALWL 132
           PLLKEAGALWL
Sbjct: 121 PLLKEAGALWL 129

[Close]

BLAST of Lag0002255 vs. NCBI nr
Match: XP_008459889.1 (PREDICTED: glutaredoxin-C1-like [Cucumis melo] >KAA0039838.1 glutaredoxin-C1-like [Cucumis melo var. makuwa] >TYK24661.1 glutaredoxin-C1-like [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCG 60
           MMHYQ ERSW+YYMP    +A+ASRDPVDRV+RLAAESAVVIFSVSSCCMCHALKRLLCG
Sbjct: 1   MMHYQAERSWEYYMP---VSASASRDPVDRVIRLAAESAVVIFSVSSCCMCHALKRLLCG 60

Query: 61  MGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120
           MGVSPTVYELDHDPRGKDIERALMRLVGA SPPVPVVFIGGKLVGSMDRVMASHINGTLV
Sbjct: 61  MGVSPTVYELDHDPRGKDIERALMRLVGATSPPVPVVFIGGKLVGSMDRVMASHINGTLV 120

Query: 121 PLLKEAGALWL 132
           PLLKEAGALWL
Sbjct: 121 PLLKEAGALWL 128

[Close]

BLAST of Lag0002255 vs. NCBI nr
Match: XP_022960351.1 (glutaredoxin-C1-like [Cucurbita moschata] >XP_023513924.1 glutaredoxin-C1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.5 bits (615), Expect = 4.1e-60
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCG 60
           MMHYQ ERSW+YYMPPTAA     RDPVDRV+RLAAESAVVIFSVSSCCMCHALKRLLCG
Sbjct: 1   MMHYQAERSWEYYMPPTAA-----RDPVDRVLRLAAESAVVIFSVSSCCMCHALKRLLCG 60

Query: 61  MGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120
           MGVSPTVYELDHDPRGK+IERALMRLVG  +PPVPVVFIGGKLVGSMDRVMASHINGTLV
Sbjct: 61  MGVSPTVYELDHDPRGKEIERALMRLVGPTAPPVPVVFIGGKLVGSMDRVMASHINGTLV 120

Query: 121 PLLKEAGALWL 132
           PLLKEAGALWL
Sbjct: 121 PLLKEAGALWL 126

[Close]

BLAST of Lag0002255 vs. NCBI nr
Match: XP_022953384.1 (glutaredoxin-C3-like [Cucurbita moschata] >XP_023548380.1 glutaredoxin-C3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 120/131 (91.60%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MMHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCG 60
           MMHYQ ERSWDYYMP TAA     RDPVDRVVRLAA SAVVIFSVSSCCMCHALKRLLCG
Sbjct: 1   MMHYQAERSWDYYMPATAA-----RDPVDRVVRLAAGSAVVIFSVSSCCMCHALKRLLCG 60

Query: 61  MGVSPTVYELDHDPRGKDIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGTLV 120
           MGVS TVYELDHDPRGK+IERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHING+LV
Sbjct: 61  MGVSSTVYELDHDPRGKEIERALMRLVGAASPPVPVVFIGGKLVGSMDRVMASHINGSLV 120

Query: 121 PLLKEAGALWL 132
           PLLKEAGALWL
Sbjct: 121 PLLKEAGALWL 126

[Close]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot
Match: Q0JDM4 (Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 5.5e-44
Identity = 93/129 (72.09%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 7   ERSWDYYMPPTA-ATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSP 66
           E++W  YMP  A   AAA+    +RV RLA+ESAVV+FSVSSCCMCHA+KRL CGMGV P
Sbjct: 9   EQAW--YMPAAAMVVAAAAETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHP 68

Query: 67  TVYELDHDPRGKDIERALMRLV---GAASPPVPVVFIGGKLVGSMDRVMASHINGTLVPL 126
            V+ELD DPRG+D+ERAL RLV   GAA+  VPVVFIGGKLVG+MDRVMA+HING+LVPL
Sbjct: 69  AVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPL 128

Query: 127 LKEAGALWL 132
           LKEAGALWL
Sbjct: 129 LKEAGALWL 135

[Close]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot
Match: Q6K609 (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-43
Identity = 96/136 (70.59%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 2   MHYQPERSWDYYMPPTAATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLLCGM 61
           M Y       +YM P AA A      V RV RLA+ESAVV+FSVSSCCMCHA+KRL CGM
Sbjct: 1   MQYGAAAEQAWYM-PAAAPAPMVESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGM 60

Query: 62  GVSPTVYELDHDPRGKDIERALMRLVG-----AASPP-VPVVFIGGKLVGSMDRVMASHI 121
           GV PTV+ELD DPRG+++ERAL RLVG     AASPP VPVVFIGGKLVG+MDRVMA+HI
Sbjct: 61  GVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHI 120

Query: 122 NGTLVPLLKEAGALWL 132
           NG+LVPLLKEAGALWL
Sbjct: 121 NGSLVPLLKEAGALWL 135

[Close]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot
Match: Q96305 (Glutaredoxin-C7 OS=Arabidopsis thaliana OX=3702 GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-34
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 2   MHYQPERSWDYYMPPT---AATAAASRDPVDRVVRLAAESAVVIFSVSSCCMCHALKRLL 61
           M YQ E SW  Y   +         +   + R+  LA+ESAVVIFSVS+CCMCHA+K L 
Sbjct: 1   MQYQTE-SWGSYKMSSLGFGGLGMVADTGLLRIESLASESAVVIFSVSTCCMCHAVKGLF 60

Query: 62  CGMGVSPTVYELDHDPRGKDIERALMRLV---GAASP-PVPVVFIGGKLVGSMDRVMASH 121
            GMGVSP V+ELD  P G DI+RAL+RL+   G++SP  +PVVFIGGKLVG+MDRVMASH
Sbjct: 61  RGMGVSPAVHELDLHPYGGDIQRALIRLLGCSGSSSPGSLPVVFIGGKLVGAMDRVMASH 120

Query: 122 INGTLVPLLKEAGALWL 132
           ING+LVPLLK+AGALWL
Sbjct: 121 INGSLVPLLKDAGALWL 136

[Close]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot
Match: Q7G8Y5 (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-34
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 28  VDRVVRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSPTVYELDHDPRGKDIERALMRLV 87
           +DRV RLAA+ AVVIFS+SSCCMCH + RL C +GV+PTV ELD DPRGK++E+AL RL+
Sbjct: 1   MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLL 60

Query: 88  GAASPPVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALWL 132
           G  SP VP VFIGG+LVGS D+VM+ H++G LVPLL+ AGALW+
Sbjct: 61  G-RSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103

[Close]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot
Match: Q0IMV4 (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-33
Identity = 65/104 (62.50%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 28  VDRVVRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSPTVYELDHDPRGKDIERALMRLV 87
           +DRV++LA+E AVVIF++SSCCMCH + RL C +GV+  V+ELD DPRGK++ERAL++L+
Sbjct: 1   MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLL 60

Query: 88  GAASPPVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALWL 132
           G   PPVPVVFIGGKLVG  +++M+ H+ G L+P+LK AGALWL
Sbjct: 61  G-RGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103

The following BLAST results are available for this feature:

BLAST of Lag0002255 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001295802.1	1.3e-61	93.13	glutaredoxin-C1-like [Cucumis sativus] >AGX01499.1 glutaredoxin [Cucumis sativus...	[more]
XP_038875997.1	3.7e-61	93.13	glutaredoxin-C1-like [Benincasa hispida]	[more]
XP_008459889.1	3.7e-61	92.37	PREDICTED: glutaredoxin-C1-like [Cucumis melo] >KAA0039838.1 glutaredoxin-C1-lik...	[more]
XP_022960351.1	4.1e-60	90.84	glutaredoxin-C1-like [Cucurbita moschata] >XP_023513924.1 glutaredoxin-C1-like [...	[more]
XP_022953384.1	3.4e-59	91.60	glutaredoxin-C3-like [Cucurbita moschata] >XP_023548380.1 glutaredoxin-C3-like [...	[more]

BLAST of Lag0002255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JDM4	5.5e-44	72.09	Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2	[more]
Q6K609	1.2e-43	70.59	Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1	[more]
Q96305	1.4e-34	61.31	Glutaredoxin-C7 OS=Arabidopsis thaliana OX=3702 GN=GRXC7 PE=1 SV=2	[more]
Q7G8Y5	2.3e-34	67.31	Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1	[more]
Q0IMV4	1.5e-33	62.50	Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC14 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 23..130 e-value: 9.8E-29 score: 101.3
None	No IPR available	PANTHER	PTHR10168:SF215	GLUTAREDOXIN-C5	coord: 7..130
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 28..130 score: 22.073509
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 39..122 e-value: 1.69867E-37 score: 120.337
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 40..104 e-value: 4.6E-13 score: 49.2
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 31..131 e-value: 1.0E-42 score: 142.1
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 7..130
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 28..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002255.1	Lag0002255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity