Lag0002247 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002247
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 40865713 .. 40867864 (+)
RNA-Seq Expression	Lag0002247
Synteny	Lag0002247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGATCCTCTCTTTCTAATGATATTGTGGAGGTATTTATTTAGTCTTAGTTATGGCCAAAATGTATCTTTTGACCGTTTATTGTTGAGGGAGTGAGTGCAATTTTGTTTTTAGTTGACTTGTATAAATTATGCTTCTCAAATACATTCATCTAAAGATGGTTCATTCTAGAGCCAATGCATTTTCTCCCCAAATTTTCTATTTTGTTATATCTTCTGTATTTGTACTTGAGAAATGTAGATGCTATGCCCTTCTTGGTTATTACCATGGAATTCTATTTTGAATTTCTGTTCTGTTCTTGTTTTATATATTGTTATTTTATAAAATGAAAAGTTACCAATTCTAACAAGATCTTTTAAATTGTTGATATGTGTTCTAAATTCGTTTTATTCCTTCTTTCCAGAATGAGGCTGTTCTGAAGGCATGTTCCGAGCCACCTCCAGCTAAATCTTCCGGAGATAAAATTAGCCAAGTTGGAAAAAAAGAGTAAGAATTCCATAGAATCCAAAAGAGTTTGGCAACTTCGGCATTGCAGTGCCAATCTTTTTCCTTATTTGGTCCTTTTAGAAAGGAAGAGTAAACATTAAGTAGTTGAGTGATGTCAAAAGTTTTCATCCTCATATGTAAGTGATGACAGTACACTAGTGTGGAATTACTGCCTCGAGTTTCACATCATTTTTATTTGTTTTTGTCATTTGATTTTATGTGATTAGTTTTTCATGGTCCTGGCTGCCTCATGAATGGCTCTTGTATTTCAGTAAAGATATTTGATATTTAGCTTTCTGAGCAAATTCACTATCGAAGTTTGGGGCTAAAAATATCTGAACTGGAAAAGGCAAGCCTTCAAGGAGAAGTTCATCCTTTCTAGTGTTCGTCTGCTCGTACTTTTGCCTGGTCACAACCCTTGAAAACGTGAGATGGATTTGTATGATCGAGTAGAATGAGCCTTTTGGGTAGGTTGATGGAAGATGAAACTATGTGAACTTTTATTGGAATGCTTGCTCGTTTATGTTGGATTGACAGAAAATATAAAAATGATATATAATGTTGTTATCCAAATTAGCCAACTTGAGCATAGCTCAACTAGTTAAGATGTTGTGTCTTCGACCAACAGATCAAAAGTTCGAGTCTGTACTCAATCAAAGATGGTGTTATCCAAAATCATATCTAGAAAATAGTTAGGAAGAAAACAGAAACCAAACTGATTTAACCAAGTTGAAAATCCTCGAGCTTTATTATATTGAGTGGGACTGGGACTGATATAGACTTTGCATACAGTTCTAATCTGTTTAGTAGCAATTTCTGCAGATCTCTCTATAACTCAAAGTTCTTTAGGTCATTCTTGGGGAATTTTCCCTCGATGGTGAGTCTGTTCGATTTCAGACATCAACATGATGATACCTTTACTAGTTGCTAAAGGCAAATGCAGTTATAAAAACTTCAGGATAAACTTGTTTGTACAGTTTGATACTTAAATGCTTAACTTGTATCATACGGTAAGTAGTACTCCACTCCTAATGGTAGATAGGGTATGTGGGTTATCGCCCTCCATCATCATCATGGAGGTATCTCTCTTCATCCACTTGTGTATTAGGCTGAACCATCTAAAACTCCCAAGTCTCTGAATATCATTTCTTTTGCAGCAGCAACTGTTTCCAGTTTCATATCTGCTGAGCATGAGATGTGGCCAATTACTTGCAGGTACTTCCCTGCTGCCCAGTGTTCATTTTAACACTGAATATTACATTTCTTGAAAGTCTTTCCATTAAAGATTGGAAATATCTGTCTCTGAATGTCAAGCATATTTACTAGCCATTGAACTGGAGAAGTATGAGTAGGTTGATCAAACATTGACATGAAAGGAATCTTGCTTGTTCCTCACTTGCTCAACTGGACCCCACCAACCAGAACTTTCTGGGATGGATTTATTTTGCATAAGAGGACTTTGATCTTTTATTTTGCAGAGATTCAGGGAAAGAAAAAGAGGAAAATAAAAAGGGATTGGAGATAGATATATGTCTTTGTTGCAGGGATGCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATGACAATTCCTTCTGTAATGGGTAA

mRNA sequence

ATGTGTGGATCCTCTCTTTCTAATGATATTGTGGAGAATGAGGCTGTTCTGAAGGCATGTTCCGAGCCACCTCCAGCTAAATCTTCCGGAGATAAAATTAGCCAAGTTGGAAAAAAAGAATCTCTCTATAACTCAAAGTTCTTTAGGTCATTCTTGGGGAATTTTCCCTCGATGGCTGAACCATCTAAAACTCCCAAGTCTCTGAATATCATTTCTTTTGCAGCAGCAACTGTTTCCAGTTTCATATCTGCTGAGCATGAGATGTGGCCAATTACTTGCAGGGATGCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATGACAATTCCTTCTGTAATGGGTAA

Coding sequence (CDS)

ATGTGTGGATCCTCTCTTTCTAATGATATTGTGGAGAATGAGGCTGTTCTGAAGGCATGTTCCGAGCCACCTCCAGCTAAATCTTCCGGAGATAAAATTAGCCAAGTTGGAAAAAAAGAATCTCTCTATAACTCAAAGTTCTTTAGGTCATTCTTGGGGAATTTTCCCTCGATGGCTGAACCATCTAAAACTCCCAAGTCTCTGAATATCATTTCTTTTGCAGCAGCAACTGTTTCCAGTTTCATATCTGCTGAGCATGAGATGTGGCCAATTACTTGCAGGGATGCAAAGCAACCTCTCTTATTTAATGTTTGTCCAAAACAAACAGCTTATAAGAGTGGTTGGGTGAAGAACTGGTCAACTTACATAATTGATGACAATTCCTTCTGTAATGGGTAA

Protein sequence

MCGSSLSNDIVENEAVLKACSEPPPAKSSGDKISQVGKKESLYNSKFFRSFLGNFPSMAEPSKTPKSLNIISFAAATVSSFISAEHEMWPITCRDAKQPLLFNVCPKQTAYKSGWVKNWSTYIIDDNSFCNG

Homology

[Close]

BLAST of Lag0002247 vs. NCBI nr
Match: XP_023004313.1 (uncharacterized protein LOC111497672 isoform X2 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 75  AATVSSFISAEHEMWPIT-------------------CRDAKQPLLFNVCPKQTAYKSGW 133
           AA  S  ++A HE+WP T                   CRDAKQPLLFNVCPKQTAYKSGW
Sbjct: 2   AAVFSFVVTAGHELWPTTVLLQRFREKKKMEIDKCFCCRDAKQPLLFNVCPKQTAYKSGW 61

[Close]

BLAST of Lag0002247 vs. NCBI nr
Match: XP_023004311.1 (uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima] >XP_023004312.1 uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 93  CRDAKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDDNSFCNG 133
           CRDAKQPLLFNVCPKQTAYKSGWVK WS YI  ID+NSF +G
Sbjct: 54  CRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSDG 95

[Close]

BLAST of Lag0002247 vs. NCBI nr
Match: XP_023004314.1 (uncharacterized protein LOC111497672 isoform X3 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 93  CRDAKQPLLFNVCPKQTAYKSGWVKNWSTYI--IDDNSFCNG 133
           CRDAKQPLLFNVCPKQTAYKSGWVK WS YI  ID+NSF +G
Sbjct: 54  CRDAKQPLLFNVCPKQTAYKSGWVKKWSAYIILIDENSFSDG 95

[Close]

BLAST of Lag0002247 vs. NCBI nr
Match: KAG6576111.1 (hypothetical protein SDJN03_26750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 12  ENEAVLKACSEPPPAKSSGDKISQVGKKESLYNSKFFRSFLGNFPSMAEPSKTPKSLNII 71
           +NEAVLKACSEPPP KSSGDKISQVGK E  ++             +AE +   ++  I 
Sbjct: 46  QNEAVLKACSEPPPPKSSGDKISQVGKNEPQHDDTL---------PVAEVNAAKRNFRIN 105

Query: 72  SFAAATVSSFISAEHEMWPIT-CRDAKQPL 101
            F  +     I+A HEMWPIT C+   +PL
Sbjct: 106 LFVQSGSVLIITAGHEMWPITECQAFSKPL 126

[Close]

BLAST of Lag0002247 vs. NCBI nr
Match: KAG6592813.1 (hypothetical protein SDJN03_12289, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 12  ENEAVLKACSEPPPAKSSGDKISQVGKKESLYNSKFFRSFLG-------------NFPSM 71
           +NEAVLKACSEPPP KSSGD ISQV KK++       R ++G             +    
Sbjct: 46  QNEAVLKACSEPPPPKSSGDGISQVEKKDTPLLMVEDRVYVGGVALHHGDTSLHIHLCIR 105

Query: 72  AEPSKTPKSLNIISFAAATVSSFISAEHEMWPIT 93
                +   LN I +AAA  S  ++A HE+WP T
Sbjct: 106 LNHLNSQSLLNNIFYAAAVFSFVVTAGHELWPTT 139

The following BLAST results are available for this feature:

BLAST of Lag0002247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004313.1	1.7e-13	55.70	uncharacterized protein LOC111497672 isoform X2 [Cucurbita maxima]	[more]
XP_023004311.1	4.6e-11	83.33	uncharacterized protein LOC111497672 isoform X1 [Cucurbita maxima] >XP_023004312...	[more]
XP_023004314.1	4.6e-11	83.33	uncharacterized protein LOC111497672 isoform X3 [Cucurbita maxima]	[more]
KAG6576111.1	5.6e-09	46.67	hypothetical protein SDJN03_26750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592813.1	1.3e-05	41.49	hypothetical protein SDJN03_12289, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0002247 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002247.1	Lag0002247.1	mRNA