Lag0002232 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002232
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Coiled-coil domain-containing protein SCD2
Location	chr4: 40734155 .. 40735509 (-)
RNA-Seq Expression	Lag0002232
Synteny	Lag0002232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGTTCTTCTCGGTGCAGCAAATCCACACTCGCTGCGACTCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGGTACTGACCCATATCCTTCTCTCGCTTCTTCTTCATTTCGTTGAATTCATTCTAGTTTCCTTCAAAATTTGCAGCGGAAAGACCTCCTTGCTTTTTCAGTTCGCTTTTAATTTGGGTTTGGAGGGAAACGTTACATTCATCTGCAACCGCCGCAAATTAGAGAACAAACCTCCATATCTCTCGCAGGCATCTATCCTCTATCTCTGTTTCTGTCTGTGTGTGGTGGTTATATGAATATAATTGAATGCTGCACATTTTCTGAAACTTGAGGCCCTTTGGGCTTAACATCCAGGGAGTTGATCCAACATCCGAAACCTTTCAGCGCATACAAATGAAGTCGGTGATCCTTTCATTCTTTATCCTAATTAAGGATGTCATATTTGATGATTGTAAACTTTGGCTCGTCCTTCAGTTGCTTTACTTGAACCTGTATTCTCTAATTCTGAATTCCAAGGTATTTGGAGGACGACGAAGGAATTAAGAAGTACTTCTCTGCATTTCACCTGCATCATACACTTCCTGTGGCAGTTGTTATTGATGATTTTGGAGATTTTTTCGATGAAAGGTTTCCATTATTTCCCATATTTTATCTTTCACACTTTCATTCATAGGTACTCTGTGCATTGCTGTGTACTTTTGTAATAAGTTTCTCTTTTTCACTTTACCATCTTTTTGAAAGGCGATGTCAAGAAAAATATGCCAATCCTCGCGGAAGAGACTTGGCAATGGTTAGAACGCTAGCTCTTTGTCATAATGCCGTGAGCCTAGCAAAGTAGGTTTGCATCTCTCAGAACTGTCAATGAATAAATTAGCCTATGAGATGACACCTGTGCTGCTTCTAACTTGGAAGATTTTTCAGTCAAAGTAGGTCTTGCCAACTCGTGTTGTCTGATACGCACCATGGAGAGTCCCCAAGGCTGATCTTCATATATAAGAGATGGGTTTCAACCATTTTCACCATTAGAGGTTAGTTTTAGCTGACTGAGTGCTCAACCCAAATTCAAAGCAGTCGCCCGTTTTTTTTTTTGTTATTTGTGTTTTAAACTGATTGTGTGACCTTCATGATGGTTAACTGACATGCCCTTTTGACCTTCTATTATTGAATTAAGTTTGGTTTATGTTGAAGGGGATGGGACTGGATGGTTCATCCTGAGAAGTATAAACAATTGTGGAAACAACTGTTGTTTGAGGACTACAAGTGCAAAGTACTCGATTGCTCTTCAGTTCCTGAGTTTGGAGGAAATTTCTGAAGACAATAGTGAACAATGA

mRNA sequence

ATGGAGAGGTTCTTCTCGGTGCAGCAAATCCACACTCGCTGCGACTCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGGTATTTGGAGGACGACGAAGGAATTAAGAAGTACTTCTCTGCATTTCACCTGCATCATACACTTCCTGTGGCAGTTGTTATTGATGATTTTGGAGATTTTTTCGATGAAAGGCGATGTCAAGAAAAATATGCCAATCCTCGCGGAAGAGACTTGGCAATGGTTAGAACGCTAGCTCTTTGTCATAATGCCGTGAGCCTAGCAAATCAAAGTAGGTCTTGCCAACTCGTGTTGTCTGATACGCACCATGGAGAGTCCCCAAGGCTGATCTTCATATATAAGAGATGGGTTTCAACCATTTTCACCATTAGAGGGGATGGGACTGGATGGTTCATCCTGAGAAGTATAAACAATTGTGGAAACAACTGTTGTTTGAGGACTACAAGTGCAAAGTACTCGATTGCTCTTCAGTTCCTGAGTTTGGAGGAAATTTCTGAAGACAATAGTGAACAATGA

Coding sequence (CDS)

ATGGAGAGGTTCTTCTCGGTGCAGCAAATCCACACTCGCTGCGACTCTTCCCACTCAATCAAGCTTGTTTCAGGGCCTCCTTCCTGGTATTTGGAGGACGACGAAGGAATTAAGAAGTACTTCTCTGCATTTCACCTGCATCATACACTTCCTGTGGCAGTTGTTATTGATGATTTTGGAGATTTTTTCGATGAAAGGCGATGTCAAGAAAAATATGCCAATCCTCGCGGAAGAGACTTGGCAATGGTTAGAACGCTAGCTCTTTGTCATAATGCCGTGAGCCTAGCAAATCAAAGTAGGTCTTGCCAACTCGTGTTGTCTGATACGCACCATGGAGAGTCCCCAAGGCTGATCTTCATATATAAGAGATGGGTTTCAACCATTTTCACCATTAGAGGGGATGGGACTGGATGGTTCATCCTGAGAAGTATAAACAATTGTGGAAACAACTGTTGTTTGAGGACTACAAGTGCAAAGTACTCGATTGCTCTTCAGTTCCTGAGTTTGGAGGAAATTTCTGAAGACAATAGTGAACAATGA

Protein sequence

MERFFSVQQIHTRCDSSHSIKLVSGPPSWYLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRCQEKYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTIFTIRGDGTGWFILRSINNCGNNCCLRTTSAKYSIALQFLSLEEISEDNSEQ

Homology

[Close]

BLAST of Lag0002232 vs. NCBI nr
Match: XP_008459907.1 (PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >XP_008459908.1 PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >ADN33703.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 161/231 (69.70%), Postives = 169/231 (73.16%), Query Frame = 0


Query: 1   MERFFSVQQIHTRCDSSHSIKLVSGPPSW------------------------------- 60
           ME+FFSVQQIHTRC+SSHSIKLVSGPPS                                
Sbjct: 1   MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 60

Query: 61  ---------------------YLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRC 120
                                YLEDD+GIKKYFSAFHLH TLPVAVVIDDFGDFF+ERRC
Sbjct: 61  PPYLSQGVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 120

Query: 121 QEKYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTI 180
           Q KYANPRGRD+AMVRTLALCHNAVSLANQ R CQLVLSDTHHGESPRLIFIYKRWV TI
Sbjct: 121 QAKYANPRGRDIAMVRTLALCHNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 180

[Close]

BLAST of Lag0002232 vs. NCBI nr
Match: KAA0039853.1 (uncharacterized protein E6C27_scaffold122G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 161/231 (69.70%), Postives = 169/231 (73.16%), Query Frame = 0


Query: 1   MERFFSVQQIHTRCDSSHSIKLVSGPPSW------------------------------- 60
           ME+FFSVQQIHTRC+SSHSIKLVSGPPS                                
Sbjct: 56  MEKFFSVQQIHTRCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 115

Query: 61  ---------------------YLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRC 120
                                YLEDD+GIKKYFSAFHLH TLPVAVVIDDFGDFF+ERRC
Sbjct: 116 PPYLSQGVDPTSETFRRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 175

Query: 121 QEKYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTI 180
           Q KYANPRGRD+AMVRTLALCHNAVSLANQ R CQLVLSDTHHGESPRLIFIYKRWV TI
Sbjct: 176 QAKYANPRGRDIAMVRTLALCHNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 235

[Close]

BLAST of Lag0002232 vs. NCBI nr
Match: XP_011656789.1 (uncharacterized protein LOC101205665 [Cucumis sativus] >KAE8646754.1 hypothetical protein Csa_004885 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 161/231 (69.70%), Postives = 167/231 (72.29%), Query Frame = 0


Query: 1   MERFFSVQQIHTRCDSSHSIKLVSGPPSW------------------------------- 60
           ME+FFSVQQIHT C+SSHSIKLVSGPPS                                
Sbjct: 15  MEKFFSVQQIHTHCESSHSIKLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENK 74

Query: 61  ---------------------YLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRC 120
                                YLEDD+GIKKYFSAFHLH TLPVAVVIDDFGDFF+ERRC
Sbjct: 75  PPYLSQGVDPTSETFQRIQMKYLEDDDGIKKYFSAFHLHSTLPVAVVIDDFGDFFEERRC 134

Query: 121 QEKYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTI 180
           QEKYANPRGRDLAMVRTLALC NAVSLANQ R CQLVLSDTHHGESPRLIFIYKRWV TI
Sbjct: 135 QEKYANPRGRDLAMVRTLALCQNAVSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTI 194

[Close]

BLAST of Lag0002232 vs. NCBI nr
Match: XP_038906786.1 (uncharacterized protein LOC120092706 isoform X1 [Benincasa hispida])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 159/231 (68.83%), Postives = 166/231 (71.86%), Query Frame = 0


Query: 1   MERFFSVQQIHTRCDSSHSIKLVSGPPSW------------------------------- 60
           ME+FFSV+QIHT CDSSHSI LVSGPPS                                
Sbjct: 29  MEKFFSVRQIHTHCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLKGNVTFICNRRKLENK 88

Query: 61  ---------------------YLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRC 120
                                YLEDDEGIKKYFSAFHLH TLPVAVVIDDFGDFF+ERRC
Sbjct: 89  PPYLSQGVDPTSETFQRIQMKYLEDDEGIKKYFSAFHLHRTLPVAVVIDDFGDFFEERRC 148

Query: 121 QEKYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTI 180
           Q+KYANPRGRDLAMVRTLALCHNAVSLAN SR CQLVLSD +HGESPRLIFIYKRWV TI
Sbjct: 149 QDKYANPRGRDLAMVRTLALCHNAVSLANPSRPCQLVLSDAYHGESPRLIFIYKRWVPTI 208

[Close]

BLAST of Lag0002232 vs. NCBI nr
Match: XP_022959968.1 (uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959970.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_022959971.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 1.7e-80
Identity = 158/228 (69.30%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 3   RFFSVQQIHTRCDSSHSIKLVSGPPSW--------------------------------- 62
           RFFSV+QI T+CDSSHSI LVSGPPS                                  
Sbjct: 6   RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPP 65

Query: 63  -------------------YLEDDEGIKKYFSAFHLHHTLPVAVVIDDFGDFFDERRCQE 122
                              YLEDDEGI KYFSAFHLH TLPVAVVIDDFGDFF+ERRCQE
Sbjct: 66  YLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDFFEERRCQE 125

Query: 123 KYANPRGRDLAMVRTLALCHNAVSLANQSRSCQLVLSDTHHGESPRLIFIYKRWVSTIFT 179
           KYANPRGRDLAMVRTLALCHNA+SLANQ R CQLVLSDTHHGESPRLIFIYKRWV TIFT
Sbjct: 126 KYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFT 185

The following BLAST results are available for this feature:

BLAST of Lag0002232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459907.1	1.0e-82	69.70	PREDICTED: uncharacterized protein LOC103498887 [Cucumis melo] >XP_008459908.1 P...	[more]
KAA0039853.1	2.3e-82	69.70	uncharacterized protein E6C27_scaffold122G001280 [Cucumis melo var. makuwa]	[more]
XP_011656789.1	1.5e-81	69.70	uncharacterized protein LOC101205665 [Cucumis sativus] >KAE8646754.1 hypothetica...	[more]
XP_038906786.1	1.3e-80	68.83	uncharacterized protein LOC120092706 isoform X1 [Benincasa hispida]	[more]
XP_022959968.1	1.7e-80	69.30	uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata] >XP_0229599...	[more]

BLAST of Lag0002232 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28653	FAMILY NOT NAMED	coord: 30..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002232.1	Lag0002232.1	mRNA