Lag0002170 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002170
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNACHT, LRR and PYD domains-containing protein 5 isoform X3
Locationchr4: 40136184 .. 40136491 (-)
RNA-Seq ExpressionLag0002170
SyntenyLag0002170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGCTCCTTCGCTGCTCTCTCTGTGCACAGCCCTAGTTAGAGACGAGATTGTTCAAAGTAATCATCTCCATTCTTGTGTTACGTATACTCTGTTCCTCTGTATTCGTTTCTCTGCCTTGCTTTCTTAATGCCTTATTCTTTTTGACTGTTAGGGGATGACGTTCCACCGGCTGTCTATGACCTTCCTCCTCACCTTTTGGATGCTCTGGCTTTGCAGCTGCCACCGTTGGGTTTACATAATTTACAGTCAGGAATGTGCGTCGTCCCACCCTTATTAACTCGTTATCTCTTTCCATTTTAG

mRNA sequence

ATGGCGGAAGCTCCTTCGCTGCTCTCTCTGTGCACAGCCCTAGTTAGAGACGAGATTGTTCAAAGGGATGACGTTCCACCGGCTGTCTATGACCTTCCTCCTCACCTTTTGGATGCTCTGGCTTTGCAGCTGCCACCGTTGGGTTTACATAATTTACAGTCAGGAATGTGCGTCGTCCCACCCTTATTAACTCGTTATCTCTTTCCATTTTAG

Coding sequence (CDS)

ATGGCGGAAGCTCCTTCGCTGCTCTCTCTGTGCACAGCCCTAGTTAGAGACGAGATTGTTCAAAGGGATGACGTTCCACCGGCTGTCTATGACCTTCCTCCTCACCTTTTGGATGCTCTGGCTTTGCAGCTGCCACCGTTGGGTTTACATAATTTACAGTCAGGAATGTGCGTCGTCCCACCCTTATTAACTCGTTATCTCTTTCCATTTTAG

Protein sequence

MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGMCVVPPLLTRYLFPF
Homology
[Close]
BLAST of Lag0002170 vs. NCBI nr
Match: KAA0050632.1 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa] >TYK07801.1 NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1  MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGMCVVP 60
          MAEAPSLLSLC AL+ DEIVQRDDVPP++YDLPP LLD LALQLPPL LHNLQSGM V+P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of Lag0002170 vs. NCBI nr
Match: XP_008461991.1 (PREDICTED: uncharacterized protein LOC103500467 isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGM 57
          MAEAPSLLSLC ALV DEIVQRDDVPPA+YDLPP LLD LALQLPPL LHNLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

[Close]
BLAST of Lag0002170 vs. NCBI nr
Match: XP_008461992.1 (PREDICTED: uncharacterized protein LOC103500467 isoform X3 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGM 57
          MAEAPSLLSLC ALV DEIVQRDDVPPA+YDLPP LLD LALQLPPL LHNLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

[Close]
BLAST of Lag0002170 vs. NCBI nr
Match: XP_004139728.1 (protein NLRC3 isoform X2 [Cucumis sativus] >KGN44867.2 hypothetical protein Csa_016637 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGM 57
          MAEAPSLLSLC ALVRDEI+QRDDVPPA+YDLPPHLLD LAL+LPPL L NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 56

[Close]
BLAST of Lag0002170 vs. NCBI nr
Match: XP_031744906.1 (NACHT, LRR and PYD domains-containing protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAEAPSLLSLCTALVRDEIVQRDDVPPAVYDLPPHLLDALALQLPPLGLHNLQSGM 57
          MAEAPSLLSLC ALVRDEI+QRDDVPPA+YDLPPHLLD LAL+LPPL L NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 56

The following BLAST results are available for this feature:
BLAST of Lag0002170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050632.11.4e-1983.61NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. ma... [more]
XP_008461991.13.5e-1889.29PREDICTED: uncharacterized protein LOC103500467 isoform X2 [Cucumis melo][more]
XP_008461992.13.5e-1889.29PREDICTED: uncharacterized protein LOC103500467 isoform X3 [Cucumis melo][more]
XP_004139728.13.5e-1887.50protein NLRC3 isoform X2 [Cucumis sativus] >KGN44867.2 hypothetical protein Csa_... [more]
XP_031744906.13.5e-1887.50NACHT, LRR and PYD domains-containing protein 5 isoform X1 [Cucumis sativus][more]
BLAST of Lag0002170 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002170.1Lag0002170.1mRNA