Lag0002162 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002162
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	S-protein homolog
Location	chr4: 40025323 .. 40026713 (+)
RNA-Seq Expression	Lag0002162
Synteny	Lag0002162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATCTTCAAGAGTTGCATTCTCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAACACAAGTGAGCGATGCAATTTTGGAGTTCGATAAGTATTACGTCGATATCATCAATGGCTTCAACAATGCGACAATCGGAGTTCATTGCAGGTCGAAAGACAACGATCTAGGCAACCAATTCGTCCCGGTTGGGGGTAAGTTTCAATGGCATTTTCGAACGAACTTTTTAGGGACGACGCTATTCTATTGTCATATTTGGTGGATTGAAGGGTACATTACGTATCGGGCATATTGGCACGACGTTGACTTTGAGAGAGATCAATGTAGAGATGGACATTGTAGATGGAAAGCAGACACTAAGGGAATTTCTGGTTTTAATTTTAACCAAAATGCTTATCAATTGCAATTCAAATGGCAACATTGAAGCCATGTTATTCACATGGAGGACATTGTAATGGAAGATTATTCAAGAAATAAAGGCTTTAATCTTTTCTCTAAAGTGCTTTCCATTGTCACAATGAAAAAATAATAATAATAATTTCGCTCTAGAATAACCTCTCCTAATATTTTTCTTTCTTTTTCTATTTTTCTTTTCTCTTTCTTTGTTTGACTCTAATTGAAAAAAAAATGGTGTAGAAAATATATGAACTTAATTAATTATGAACATTTCAAGAGAGTGTGGAAGAATAACAATATAGGAAATAATTATACATTTATTTCAAAAGGGTATCAAGTTATCACACATGAATCTTTTTGCATTCGTACAAAGAATCTATACAAATCAAAATAATAAAATTTGAACAAGTCATTCTATTTTTTTTTTTTTTTTTTGAATTAAAGTACTCTATACACATGAATCTTTAGCATCAAAATTTGAATATAACTTTAATAGATAAGAGAACATATTACCTTCTTTAAAATTAAGGGTTTGATTTACCGTTCTCCAGCGAAGTCAATAAAATATATATGGTTTTATAGTCTCTATATCCTCTCCATTTTTTTTATTTGGCTCTATTTGATGAATAGAGCGAGGAAGTACTTTTATGTTTGTTAACAATTTAAGTTTTTAAACTTTTACATATTAAAGTTCATAGACTTAACTGTCACAAATTTGAAAGTATATATGGACTAAACTGTTACAAAACTAAAGTTTAGGGACTAAATTATCGTAAAAATTAATTCAACAACATGTGGAGGTGGAAATTTGAACATCTAACCTCTTTTGATCGAGAATATATACTTTCTACTGTAGGTTGTGACAGAAGAGGGCAAGTGGAAGGGGAGAAAGAGAGAGAGGCGAGGGAGCTAGAAGAGAGGAGAGGAGAAAAAAAGACAATAAAGAAGGAGAGAGAGGAAGAAGAGAAGAGAGCTCGACAGAGAAGATGA

mRNA sequence

ATGGGCATCTTCAAGAGTTGCATTCTCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAACACAAGTGAGCGATGCAATTTTGGAGTTCGATAAGTATTACGTCGATATCATCAATGGCTTCAACAATGCGACAATCGGAGTTCATTGCAGGTCGAAAGACAACGATCTAGGCAACCAATTCGTCCCGGTTGGGGGTTGTGACAGAAGAGGGCAAGTGGAAGGGGAGAAAGAGAGAGAGGCGAGGGAGCTAGAAGAGAGGAGAGGAGAAAAAAAGACAATAAAGAAGGAGAGAGAGGAAGAAGAGAAGAGAGCTCGACAGAGAAGATGA

Coding sequence (CDS)

ATGGGCATCTTCAAGAGTTGCATTCTCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAACACAAGTGAGCGATGCAATTTTGGAGTTCGATAAGTATTACGTCGATATCATCAATGGCTTCAACAATGCGACAATCGGAGTTCATTGCAGGTCGAAAGACAACGATCTAGGCAACCAATTCGTCCCGGTTGGGGGTTGTGACAGAAGAGGGCAAGTGGAAGGGGAGAAAGAGAGAGAGGCGAGGGAGCTAGAAGAGAGGAGAGGAGAAAAAAAGACAATAAAGAAGGAGAGAGAGGAAGAAGAGAAGAGAGCTCGACAGAGAAGATGA

Protein sequence

MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGNQFVPVGGCDRRGQVEGEKEREARELEERRGEKKTIKKEREEEEKRARQRR

Homology

[Close]

BLAST of Lag0002162 vs. NCBI nr
Match: XP_031745088.1 (S-protein homolog 3-like [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGN 60
          MGI KS I+LLVISI LS ELTQVS A+  F+K+YV IINGF+NATIG HCRSKD+DLGN
Sbjct: 1  MGIRKSYIILLVISIALSAELTQVSSAL--FEKFYVHIINGFDNATIGAHCRSKDDDLGN 60

Query: 61 QFVPV 66
          QF+PV
Sbjct: 61 QFIPV 63

[Close]

BLAST of Lag0002162 vs. NCBI nr
Match: KAE8646226.1 (hypothetical protein Csa_016670 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGN 60
          MGI KS I+LLVISI LS ELTQVS A+  F+K+YV IINGF+NATIG HCRSKD+DLGN
Sbjct: 1  MGIRKSYIILLVISIALSAELTQVSSAL--FEKFYVHIINGFDNATIGAHCRSKDDDLGN 60

Query: 61 QFVPV 66
          QF+PV
Sbjct: 61 QFIPV 63

[Close]

BLAST of Lag0002162 vs. NCBI nr
Match: KAA0050599.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGN 60
          MG  KS I+LLVIS  LS ELTQVS+A   FDK+YV IINGF+NATIG HCRSKD+DL N
Sbjct: 1  MGNRKSFIILLVISTALSTELTQVSNAF--FDKFYVHIINGFDNATIGAHCRSKDDDLSN 60

Query: 61 QFVPVGG 68
          QF+PV G
Sbjct: 61 QFIPVNG 65

[Close]

BLAST of Lag0002162 vs. NCBI nr
Match: KAB2636493.1 (hypothetical protein D8674_027027 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGN 60
          M   K C+L LV+ ICL    TQ+S++I  FDK  V +ING    T+ VHC+SKD+DLG+
Sbjct: 1  MRTMKPCLLFLVLLICLC--QTQISNSI--FDKMRVHVINGLTKETLNVHCQSKDDDLGS 60

Query: 61 QFVPV 66
            V V
Sbjct: 61 HDVSV 61

[Close]

BLAST of Lag0002162 vs. NCBI nr
Match: KAB2636490.1 (hypothetical protein D8674_027024 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MGIFKSCILLLVISICLSIELTQVSDAILEFDKYYVDIINGFNNATIGVHCRSKDNDLGN 60
          M   K C+L LV+ ICL    TQ+S++I  FDK  V +ING    T+ VHC+SKD+DLG+
Sbjct: 1  MRTMKPCLLFLVLLICLC--QTQISNSI--FDKMRVHVINGLTKETLNVHCQSKDDDLGS 60

Query: 61 QFVPV 66
            V V
Sbjct: 61 HDVSV 61

The following BLAST results are available for this feature:

BLAST of Lag0002162 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745088.1	1.5e-15	75.38	S-protein homolog 3-like [Cucumis sativus]	[more]
KAE8646226.1	1.5e-15	75.38	hypothetical protein Csa_016670 [Cucumis sativus]	[more]
KAA0050599.1	2.2e-14	71.64	pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like...	[more]
KAB2636493.1	2.7e-04	49.23	hypothetical protein D8674_027027 [Pyrus ussuriensis x Pyrus communis]	[more]
KAB2636490.1	2.7e-04	49.23	hypothetical protein D8674_027024 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Lag0002162 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..110
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 36..66 e-value: 2.8E-4 score: 21.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002162.1	Lag0002162.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region