Lag0002151 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002151
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAcanthoscurrin-1-like
Locationchr4: 39896950 .. 39897336 (+)
RNA-Seq ExpressionLag0002151
SyntenyLag0002151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATTGTTTATGGCTTTGCTCTTGGCTCTTGTGGCCACTCACGCCTTAGCTAGGCCTACGCCCAAGGATGCCACCTTCAATGACCAAAAGAACTTCCTAACTTACGGCGGTGTCGGTGGCTACTCCGGCATTGGCAACAACGGCCTCCCGTTCGGTGGGATCGGCGGTGCAATTGGAGGAGGTGGCCTCGGTGGCGGTCTCGGTGGTGGTCTCGGTGGTCTCGGTGGGTTAGGAGGCACTGGAGGTGCCATTGGTGGAACTCTTGGAGGTACAACGACTGGCGGTGGTCTCGGCGGTGGTCTTGGTGGTGGGCTCGGTGGCGGTCTCGGTGGTGGTCTTGGTGGTGGCGTTGGTGGTGGGTCTGGTCTTCCTTATCCTTGA

mRNA sequence

ATGGCCAAATTGTTTATGGCTTTGCTCTTGGCTCTTGTGGCCACTCACGCCTTAGCTAGGCCTACGCCCAAGGATGCCACCTTCAATGACCAAAAGAACTTCCTAACTTACGGCGGTGTCGGTGGCTACTCCGGCATTGGCAACAACGGCCTCCCGTTCGGTGGGATCGGCGGTGCAATTGGAGGAGGTGGCCTCGGTGGCGGTCTCGGTGGTGGTCTCGGTGGTCTCGGTGGGTTAGGAGGCACTGGAGGTGCCATTGGTGGAACTCTTGGAGGTACAACGACTGGCGGTGGTCTCGGCGGTGGTCTTGGTGGTGGGCTCGGTGGCGGTCTCGGTGGTGGTCTTGGTGGTGGCGTTGGTGGTGGGTCTGGTCTTCCTTATCCTTGA

Coding sequence (CDS)

ATGGCCAAATTGTTTATGGCTTTGCTCTTGGCTCTTGTGGCCACTCACGCCTTAGCTAGGCCTACGCCCAAGGATGCCACCTTCAATGACCAAAAGAACTTCCTAACTTACGGCGGTGTCGGTGGCTACTCCGGCATTGGCAACAACGGCCTCCCGTTCGGTGGGATCGGCGGTGCAATTGGAGGAGGTGGCCTCGGTGGCGGTCTCGGTGGTGGTCTCGGTGGTCTCGGTGGGTTAGGAGGCACTGGAGGTGCCATTGGTGGAACTCTTGGAGGTACAACGACTGGCGGTGGTCTCGGCGGTGGTCTTGGTGGTGGGCTCGGTGGCGGTCTCGGTGGTGGTCTTGGTGGTGGCGTTGGTGGTGGGTCTGGTCTTCCTTATCCTTGA

Protein sequence

MAKLFMALLLALVATHALARPTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGGAIGGGGLGGGLGGGLGGLGGLGGTGGAIGGTLGGTTTGGGLGGGLGGGLGGGLGGGLGGGVGGGSGLPYP
Homology
BLAST of Lag0002151 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-35
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 0

Query: 1   MAKLFMALLLALVATHALARPTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGGAI 60
           MAKLFMALLLALVATHALARPTPKD TF+DQKNFLTYGGVGGYSGIG+NGLPFGG+GGAI
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGGGLGGGLGGGL-------GGLGGLGGTGGAIGGTLGGTTTGGGLGGGLGGGLGGGLGG 120
           GGGGLGGGLGGGL       GGLGGLGGTGG +GG +GGTT  GGLGGGLGGGLGGGLGG
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGG-IGGTT--GGLGGGLGGGLGGGLGG 120

Query: 121 GLGGGVGGGSGLPYP 129
           GLGGGVGG SG+ YP
Sbjct: 121 GLGGGVGGASGVTYP 132

BLAST of Lag0002151 vs. NCBI nr
Match: XP_008462124.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 7.0e-33
Identity = 110/130 (84.62%), Postives = 116/130 (89.23%), Query Frame = 0

Query: 6   MALLLALVATHALARPTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGGAIGGGGL 65
           MALLLALVATHALARPTPKD TF+DQKNFLTYGGVGGYSGIG+NGLPFGG+GGAIGGGGL
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGGLGGGL-------GGLGGLGGTGGAIGGTLGGTTTGGGLGGGLGGGLGGGLGGGLGGG 125
           GGGLGGGL       GGLGGLGGTGG +GG +GGTT  GGLGGGLGGGLGGGLGGGLGGG
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGG-IGGTT--GGLGGGLGGGLGGGLGGGLGGG 120

Query: 126 VGGGSGLPYP 129
           VGG SG+ YP
Sbjct: 121 VGGASGVTYP 127

BLAST of Lag0002151 vs. NCBI nr
Match: XP_011659762.1 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 0

Query: 1   MAKLFMALLLALVATHALARPTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGGAI 60
           MAKLFMALLLALVATHALARPTPKD TF+DQKNFLTYGGVGGYSGIGNNGLPFGG+GGAI
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGGGLGGGLGGGL-GGLGGLGGTGGAIGGTLGGTTTG----GGLGGGLGGGLGGGLGGGL 120
           GGGGLGGGLGGGL GGLGG  G GG +GG LGG   G    GG  GGLGGGLGGGLGGGL
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGG-LGGPGGGFGGIGGTTGGLGGGLGGGLGGGL 120

Query: 121 GGGVGGGSGLPYP 129
           GGGVGG SG+ YP
Sbjct: 121 GGGVGGASGVTYP 132

BLAST of Lag0002151 vs. NCBI nr
Match: KAE8646236.1 (hypothetical protein Csa_016187 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 0

Query: 1   MAKLFMALLLALVATHALARPTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGGAI 60
           MAKLFMALLLALVATHALARPTPKD TF+DQKNFLTYGGVGGYSGIGNNGLPFGG+GGAI
Sbjct: 38  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 97

Query: 61  GGGGLGGGLGGGL-GGLGGLGGTGGAIGGTLGGTTTG----GGLGGGLGGGLGGGLGGGL 120
           GGGGLGGGLGGGL GGLGG  G GG +GG LGG   G    GG  GGLGGGLGGGLGGGL
Sbjct: 98  GGGGLGGGLGGGLGGGLGGGTGIGGGLGG-LGGPGGGFGGIGGTTGGLGGGLGGGLGGGL 157

Query: 121 GGGVGGGSGLPYP 129
           GGGVGG SG+ YP
Sbjct: 158 GGGVGGASGVTYP 169

BLAST of Lag0002151 vs. NCBI nr
Match: XP_022143624.1 (glycine-rich protein 23-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 103/137 (75.18%), Postives = 112/137 (81.75%), Query Frame = 0

Query: 1   MAKLFMALLLALVATHALAR--PTPKDATFNDQKNFLTYGGVGGYSGIGNNGLPFGGIGG 60
           MAK+FM LLLALVATHA+AR  PTP DATF DQKNF TYGG+GGYSGIGNNGLPFGG+GG
Sbjct: 1   MAKVFMTLLLALVATHAMARPTPTPTDATFKDQKNFFTYGGLGGYSGIGNNGLPFGGVGG 60

Query: 61  AIGGGGLGGGLGGGL-------GGLGGLGGTGGAIGGTLGGTTTGGGLGGGLGGGLGGGL 120
           A+GGGGLGGGLGGGL       GGLGGLGGTGG +GG +GG   GG +G   GGG  GGL
Sbjct: 61  AVGGGGLGGGLGGGLGGGTGIGGGLGGLGGTGGGLGGNVGG--IGGTIG---GGGASGGL 120

Query: 121 GGGLGGGVGGGSGLPYP 129
           GGGLGGG+GGGS LPYP
Sbjct: 121 GGGLGGGLGGGSALPYP 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050560.12.0e-3585.19acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li... [more]
XP_008462124.17.0e-3384.62PREDICTED: acanthoscurrin-1-like [Cucumis melo][more]
XP_011659762.13.9e-3183.46glycine-rich protein 5 [Cucumis sativus][more]
KAE8646236.13.9e-3183.46hypothetical protein Csa_016187 [Cucumis sativus][more]
XP_022143624.11.4e-2875.18glycine-rich protein 23-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 1..128
NoneNo IPR availablePANTHERPTHR34463:SF11GLYCINE-RICH PROTEINcoord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002151.1Lag0002151.1mRNA