Lag0002138 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002138
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionthioredoxin-like protein 4B
Locationchr4: 39739105 .. 39740481 (+)
RNA-Seq ExpressionLag0002138
SyntenyLag0002138
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGTTTGTCTCCTCCTTGACGATATTGTATGTTGCCAAAATCCCTGAATTTTGTTTTATTCTTCTAGGGTTGATATGGTTTTTCAGAATTGATGGTTTTGTTTGCCTACTTTTCATTCTTTTTAATTGTTTAGCTTGCAAAGTGCGCACGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTCAAGTATTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGTAAGCCTTTTCCTGCTGGTCTTAGTTAATTTATTTCCTTAATTCTATTCAAATATGTCTAGTATGGATGGATATGTAAGCAATGCATATGGTCTATCAGTGTGGCTTTAGCTACTTGATCTTGCAAAGTAGAGGATCTAATATTCTTGACCAAAAAGCTGGTTGATCTTGTTTTTACTTAACTCAAAAAACCCCTTGGGAGTTGTAGCAAATTACTGCCGTTGAAATGAGAAGCAAAAGGTATTTATATTTATTGGACAAAATCAACAATTGGCTATCGTTTGGGAGGATGTGTCATCCTCTCAAAAATTTTGTCTTCTCGTTTCCTCTAAGAGTTTGTTACACAGCACGCTGAGATTGTTGTTGTTTTGTTAAGTTTAATATTTTCTTATTGTGGTCTTTGATTGTAAGTGTACTGAAGACAAGCTTCGAATAAGTAGTTTGTAATATGCTGTTTCTCCTGCTTGTTGTACATAAGTAAGAAGCAAGGAGGATATGCAAATGATCTTTATTTTATGCTCTTATTGCAATACCAGGTTGATACATTCGTTTTCCAGTTGCTCTTTGAGTGACTCTTCCCTATAAAGCTAAAGTCCTCTGGATTGCTCTTTGTCGGACTTGTAATTAGATTCATTAGAAAAGTCAATGAGTTTTCCGTGAGGAAGAGAGATCTTTTAGTTTTCAGGATTTTACTATCTTAATTGCTTTGAACTGAAGTATTCTCTTGAAAGTCTTTTATAATCATCTCTTGTTTAGTTTTGATAAGTTAAGGAGTCAGGTTTAGAATTATCTGATTATGCCTCTTTATGTACTCTCCGTTTTTTGATGATGAAAGGGTGATTCTTTTGACATGCAGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAAAAGCAGGATTTTATTGATGTTGTGGAGGTATGGCCACTGGCTGTTGAACATAAAAGAGAAGCTGTGTATGAAACAGATTGTTGA

mRNA sequence

ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGTTTGTCTCCTCCTTGACGATATTCTTGCAAAGTGCGCACGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTCAAGTATTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAAAAGCAGGATTTTATTGATGTTGTGGAGGTATGGCCACTGGCTGTTGAACATAAAAGAGAAGCTGTGTATGAAACAGATTGTTGA

Coding sequence (CDS)

ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGTTTGTCTCCTCCTTGACGATATTCTTGCAAAGTGCGCACGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTCAAGTATTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAAAAGCAGGATTTTATTGATGTTGTGGAGGTATGGCCACTGGCTGTTGAACATAAAAGAGAAGCTGTGTATGAAACAGATTGTTGA

Protein sequence

MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEVWPLAVEHKREAVYETDC
Homology
[Close]
BLAST of Lag0002138 vs. NCBI nr
Match: XP_022152114.1 (thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-like protein 4B [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE
Sbjct: 61  VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 119

[Close]
BLAST of Lag0002138 vs. NCBI nr
Match: KAG6575968.1 (Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014491.1 Thioredoxin-like protein 4B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 4.4e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVE
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVE 119

[Close]
BLAST of Lag0002138 vs. NCBI nr
Match: XP_022953679.1 (thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-like protein 4B [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 4.4e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVE
Sbjct: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVE 119

[Close]
BLAST of Lag0002138 vs. NCBI nr
Match: XP_004139666.1 (thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745245.1 thioredoxin-like protein 4B [Cucumis sativus] >XP_031745246.1 thioredoxin-like protein 4B [Cucumis sativus] >KGN44925.2 hypothetical protein Csa_015728 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 5.7e-57
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+AL
Sbjct: 1   MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKW+GAFHQKQDFIDVVE
Sbjct: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWVGAFHQKQDFIDVVE 119

[Close]
BLAST of Lag0002138 vs. NCBI nr
Match: XP_022991475.1 (thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like protein 4B [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 7.5e-57
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL
Sbjct: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFH+KQDFIDVVE
Sbjct: 61  VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHEKQDFIDVVE 119

[Close]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match: Q9NX01 (Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-33
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEV 120
           VD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++EV
Sbjct: 61  VDVD--QTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 118

[Close]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match: Q8BUH1 (Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-33
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I L
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVEV 120
           VD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ DHTK++G+F  KQDFID++EV
Sbjct: 61  VDVD--HTPVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 118

[Close]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIE 117

[Close]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I L
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVVE 120
           VDI   E+  + K +++    + +FFF   H+ +D GT ++ K   A   KQ+ +D++E
Sbjct: 61  VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIE 117

[Close]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0 

Query: 1   MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60
           MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGTADHTKWIGAFHQKQDFIDVV 120
           VDI +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 117

The following BLAST results are available for this feature:
BLAST of Lag0002138 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152114.11.2e-5798.32thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-li... [more]
KAG6575968.14.4e-5797.48Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KA... [more]
XP_022953679.14.4e-5797.48thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-lik... [more]
XP_004139666.15.7e-5796.64thioredoxin-like protein 4B [Cucumis sativus] >XP_011659173.1 thioredoxin-like p... [more]
XP_022991475.17.5e-5796.64thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like ... [more]
BLAST of Lag0002138 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9NX011.2e-3360.00Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1[more]
Q8BUH12.1e-3360.00Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2[more]
P838761.0e-1134.45Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
P838771.0e-1134.45Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
Q9FE621.7e-1137.19Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..137
e-value: 1.0E-57
score: 207.7
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..120
e-value: 9.1E-40
score: 135.5
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..128
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..136
e-value: 1.7E-41
score: 143.0
NoneNo IPR availablePANTHERPTHR12052:SF4THIOREDOXIN-LIKE PROTEIN 4Bcoord: 1..128
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 7..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002138.1Lag0002138.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP