Lag0002115 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002115
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	chr4: 39452424 .. 39455045 (-)
RNA-Seq Expression	Lag0002115
Synteny	Lag0002115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTAAAGACAGTCTCTCGGTTATCATCTCGCATGCACTCTTTTGTTTTGAAGCTCAATAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTCAATCACAGTCCTCTACAGTTTCTACATCACGTCTTTCTTGCACTTCACGGTGAGACTTGTCTTTTTTCTCCATTTCCAATCTCATACTTCATTCCATCAAATCATCGTTAGTTAGAGAAAAAAATTTGGTTCAATTCTTTATTGTGGAATAGATTTTTACAATAGGTTACCATTGGAGTTAAGTAGCCAGGGGTCACTGATGCCATTGCACAGTGCCATTGCTGCAGCAAGATTGATTTCGAGTCTGACTATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTTTCATGCTAATGATTCTCTATGATTTTCTATTATTTTATTTGCACTTGGTTGTGAGTTTTTATAACTCTTAGGATCTGATCATAGTTCAGGTCAAGTTCAATGCATATGTCTTGCAGAATTCCCGTACGATTGAATTAATCTGCCGATTGCTATTTGGATAGCTAGCAATGTTGCTGCTTGTCTGTATTACTAGAATTATCATCACCTTTGAATTGTGATCAGAACAACATAGGTGAAAATGATAGAAGGAAAACATCACTTTGACTGGTATGTGAAAGAAACAAGCTGAATGGTGCAATCAATTTTAGTATTTAAACCAAAGTTTAATATAACTGATCATACATTTGGAGGATTTTAGCATTAATCTAGTTTTTTAACAACTGGACTGTGGTAGCTTATGTGTTGACTCTTCAAATTGATCACCAAGCTTCAAATTATACTCGAGTAATGTAGTTTTCAACTTGTTGATGGCAGATAATTTTTCTGATCTTCAATTTATATGAAACCTTCAAAAACATTTGTGATGTTTAGCCATTTTTATTCTGTCTATTATTACCACTATCTGAAATGTGTGTGTATACCCACACTAACTTATGCACATCTCAGTCATTCTCAATGGACTATCACTTGATCCTACAACTGTTAGAGCTACATCTCTTAGAATTAATTGTTGTCATGCATCGTGACTTAGTAGGCTTTTGGTGGGTGCACATGTTTGGGTTATTTGGCCAAAAAGAATTCAAAGAATAAATAATTGAACATTTGAGTAAGTTTTCTCCACTTTGCAAATGACTTTTGATCCACTTTTTGGTTCTTGGAGTTCTATAATTATCATTCGCATTCTAGTCGATAGGATGTGTGTGCGGGTGTGTAATTATTGGCTAATTGGGAGGTTCCTCTCACCCCCTTTTGATGTAAAATCCTCCTTTGAACAAATATCCTCTTTTCTTCCTCAAGAAAAAAGATTATGTTCATCTCATAGTGACAACAAAACTACCTGAAGAAAGTAATCTATTTGATGTGTTTCATTCAGTGTAACAAAGTAACATTACTAAACTTTCAGTGGCAAGAAGTTGGTTGCATCATTGTTCATTACGCCTCTTGCACCTGAACCCTCGTAATGTATGCCTGTTTGGGTGGCTAGGATGATAATGGCCCCTTGTTCATTCTCTGCTGGTTCCCTGGAAAATTTTGGGGATTGTTATTTTGTTCATATAGTTGGACCTGGGTAGAATTTTTGTAAGCTGAGGGTTTTGCACTTCAGATGCTGCTACGTTTAGATTTCAAAAACCAAGCTAAATCAATCTAGACTGATGCTATATTGCTTATCTTTGTAAGGCATGGAAAGTAAAAAATAGTAGAAATTTTCACAAAATCGAGATATTCAACTTTTTGGTATCTCTTTTAACTCTTAAACTTTGGTTAGATGTCTAGTACTCTATCTCCTCTCTTCTAATTTCTTTATAGTATTCACAGTACAGAGTTTCTTTCGAAAAAAATAACTTATTTTCCCAAAGTATACACTAATTGAAACTATTGTGCTTGAGAACTTTGAGAAGAGTGTGAAAGTTGGGGGTAAAGGAAATCATTTAGAGGCGTTTAAGGCATGAGTTCGGCTTCTTGAAGCTTGGGTTTAGTAAGTTTAGGGTTTAAGTTAAAGGTTTAGGAAGCCTGGTTTTGGAAAATTATGTTGGGGTGCAGCTTTAGAAAGCCTGGGTTTAGAAAAACTGTGTAAAGGGCTTAAATAGTGGGTTATTTTTCGAACTCATTAATTTCTCCAATGAAATTTGTTTTTGGTAATTCCTCATTCTAACGTTGGTTAGGCTTAGAAAGTCAAACCCTAAGCCAAACCCATGCCCCAAACACCCCTTTAGAGGTGTAGGGTAATTCTTTTTTTTTTTTTTTTTTTGAGTACATGGGGTGGGGGATTCGAACCTCTGACCTCTTGGTCGAAGGTATATGCCAATTACCACTGAGCTAAGCTCACTTTGGCGGTGTAGGGTAATTCTGGTCACATAATAAGTTGTGACAAATGTAATGATAGATGTGTTTATAGTTTACGTCATTTCTAGTTTCATGCACGACAATTTATTTGTGTGAGAACCATCTTGATGTTCTTTTGTCTCTGCAGGTATTTCAATGCCTTTATGACAGTTTTGCTGTGCAGGAAGTTGTTCTCAGCAGTTTCTGTTTTGTTGACAATTTGCGTTTCCATTAA

mRNA sequence

ATGGCGTCCTTAAAGACAGTCTCTCGGTTATCATCTCGCATGCACTCTTTTGTTTTGAAGCTCAATAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTCAATCACAGTCCTCTACAGTTTCTACATCACGTCTTTCTTGCACTTCACGGTTACCATTGGAGTTAAGTAGCCAGGGGTCACTGATGCCATTGCACAGTGCCATTGCTGCAGCAAGATTGATTTCGAGTCTGACTATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGTGGCAAGAAGTTGGTTGCATCATTGTTCATTACGCCTCTTGCACCTGAACCCTCGTAATGTATTTCAATGCCTTTATGACAGTTTTGCTGTGCAGGAAGTTGTTCTCAGCAGTTTCTGTTTTGTTGACAATTTGCGTTTCCATTAA

Coding sequence (CDS)

ATGGCGTCCTTAAAGACAGTCTCTCGGTTATCATCTCGCATGCACTCTTTTGTTTTGAAGCTCAATAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTCAATCACAGTCCTCTACAGTTTCTACATCACGTCTTTCTTGCACTTCACGGTTACCATTGGAGTTAAGTAGCCAGGGGTCACTGATGCCATTGCACAGTGCCATTGCTGCAGCAAGATTGATTTCGAGTCTGACTATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGTGGCAAGAAGTTGGTTGCATCATTGTTCATTACGCCTCTTGCACCTGAACCCTCGTAATGTATTTCAATGCCTTTATGACAGTTTTGCTGTGCAGGAAGTTGTTCTCAGCAGTTTCTGTTTTGTTGACAATTTGCGTTTCCATTAA

Protein sequence

MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQVARSWLHHCSLRLLHLNPRNVFQCLYDSFAVQEVVLSSFCFVDNLRFH

Homology

[Close]

BLAST of Lag0002115 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELS 60
          MASLKTVSRLSSR+ S   K NKRSS SELSPFKS CQSQ ST STSRL CTSRLP+ELS
Sbjct: 1  MASLKTVSRLSSRLQSLAPKFNKRSSYSELSPFKSPCQSQPSTASTSRLPCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 93

[Close]

BLAST of Lag0002115 vs. NCBI nr
Match: KAG7021289.1 (hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-30
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELS 60
          MASLK VSRLSSR+HS   KLNKRSSSS+ SPFKSTCQS+ S  STSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSL IES+GWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQ 93

[Close]

BLAST of Lag0002115 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELS 60
          MASL+ VSRLSSR+ S   KLNKRS SSELSPFKS+CQSQ S  STSR+SCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ 93

[Close]

BLAST of Lag0002115 vs. NCBI nr
Match: KAG6586435.1 (hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELS 60
          MASLK VSRLSSR+HS   KLNKRSSSS+ SPFKSTCQS+ S  STSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAI+AARLISSL IES+GWGLVPQ
Sbjct: 61 SQGSLMPLHSAISAARLISSLAIESRGWGLVPQ 93

[Close]

BLAST of Lag0002115 vs. NCBI nr
Match: KAG7030432.1 (hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 79/93 (84.95%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MASLKTVSRLSSRMHSFVLKLNKRSSSSELSPFKSTCQSQSSTVSTSRLSCTSRLPLELS 60
          MASL+ VSRLSSR+ S   KLNKRS SSELSPFKS CQSQ S  STSR+SCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ 93

The following BLAST results are available for this feature:

BLAST of Lag0002115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889658.1	2.8e-30	87.10	uncharacterized protein LOC120079520 [Benincasa hispida]	[more]
KAG7021289.1	4.7e-30	86.02	hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023547330.1	1.0e-29	84.95	uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331....	[more]
KAG6586435.1	1.0e-29	84.95	hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030432.1	1.4e-29	84.95	hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0002115 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 1..96
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002115.1	Lag0002115.1	mRNA