Lag0002111 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002111
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	4F5 domain-containing protein
Location	chr4: 39400741 .. 39401267 (+)
RNA-Seq Expression	Lag0002111
Synteny	Lag0002111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCATATCCTTTCATCTTTTCTTCTTGTGTTCCAGTTTTCTCATCTTTACTTTCTGTTTGTTTTTAGAAACAGAGGAGAAGTAGAATCAGAGGTTTTTTTTTTCTGATTGTAGTGATCTTTGCAACACCTGCTGGTGATCGATGATTTTAGGCATTAACATTTTAGAAATCGAAACGAATTAGGTTAGATTTTATGGAATTAAAGAGCGATTTCGTGTTTTTATGTTGTGTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGAGCTCAAGCTAGGGCTGGAAACAAGTCCAAGCAACCGAGAAACGACGGCTTGACGCCGGAACAGCGACGTGAAAGGTTCGATTGCTCTTTCGATTAGGAATCTGTGTTGGAGAAGCATAGTTCTTAACTTTCGGTGGATTCTTAACTTTCAGGGATGCAAAAGCACTTCAGGAGAAGACAGCGAGGAAGGCCGCAATGGCTGCCGGAGGAAACAACGCCGGCGGCGGAGGTAAAAAGTAA

mRNA sequence

ATGACTCATATCCTTTCATCTTTTCTTCTTGTGTTCCAGTTTTCTCATCTTTACTTTCTCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGAGCTCAAGCTAGGGCTGGAAACAAGTCCAAGCAACCGAGAAACGACGGCTTGACGCCGGAACAGCGACGTGAAAGGGATGCAAAAGCACTTCAGGAGAAGACAGCGAGGAAGGCCGCAATGGCTGCCGGAGGAAACAACGCCGGCGGCGGAGGTAAAAAGTAA

Coding sequence (CDS)

ATGACTCATATCCTTTCATCTTTTCTTCTTGTGTTCCAGTTTTCTCATCTTTACTTTCTCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGAGCTCAAGCTAGGGCTGGAAACAAGTCCAAGCAACCGAGAAACGACGGCTTGACGCCGGAACAGCGACGTGAAAGGGATGCAAAAGCACTTCAGGAGAAGACAGCGAGGAAGGCCGCAATGGCTGCCGGAGGAAACAACGCCGGCGGCGGAGGTAAAAAGTAA

Protein sequence

MTHILSSFLLVFQFSHLYFLERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGNNAGGGGKK

Homology

[Close]

BLAST of Lag0002111 vs. NCBI nr
Match: XP_023547529.1 (putative SERF-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-21
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 21 ERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGNNAG 80
          ERGNQRDRDRERAQARAG+K+KQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGG NAG
Sbjct: 11 ERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGINAG 70

Query: 81 GGGK 85
          GGGK
Sbjct: 71 GGGK 74

[Close]

BLAST of Lag0002111 vs. NCBI nr
Match: XP_022953785.1 (putative SERF-like protein [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-21
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 21 ERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGNNAG 80
          ERGNQRDRDRERAQARAG+K+KQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGG NAG
Sbjct: 11 ERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGINAG 70

Query: 81 GGGK 85
          GGGK
Sbjct: 71 GGGK 74

[Close]

BLAST of Lag0002111 vs. NCBI nr
Match: KRH07555.1 (hypothetical protein GLYMA_16G094600v4, partial [Glycine max] >RZB60300.1 hypothetical protein D0Y65_043189, partial [Glycine soja])

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-21
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 10  LVFQFSHLYFL--ERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRERDAKALQEKTA 69
           L    S+L F+  +RGNQR+RDRERAQARAG K+KQP+NDGLTPEQRRERDAKALQEKTA
Sbjct: 36  LCLSLSYLSFILSQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTA 95

Query: 70  RKAAMAAGGNNAGGGGKK 86
           +KAA AAGGNNAGGGGKK
Sbjct: 96  KKAAQAAGGNNAGGGGKK 113

[Close]

BLAST of Lag0002111 vs. NCBI nr
Match: KHN26512.1 (hypothetical protein glysoja_047978, partial [Glycine soja])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1   MTHILSSFLLVFQFSH---LYFLERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRER 60
           ++ IL +F L+  F +       +RGNQR+RDRERAQARAG K+KQP+NDGLTPEQRRER
Sbjct: 43  LSFILRAFCLILLFKNQLKKMTHQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRER 102

Query: 61  DAKALQEKTARKAAMAAGGNNAGGGGKK 86
           DAKALQEKTA+KAA AAGGNNAGGGGKK
Sbjct: 103 DAKALQEKTAKKAAQAAGGNNAGGGGKK 130

[Close]

BLAST of Lag0002111 vs. NCBI nr
Match: XP_022991972.1 (putative SERF-like protein [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-20
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 21 ERGNQRDRDRERAQARAGNKSKQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGNNAG 80
          ERGNQRDRDRERAQARAG+K+KQPRNDG TPEQRRERDAKALQEKTARKAAMAAGG NAG
Sbjct: 11 ERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAG 70

Query: 81 GGGK 85
          GGGK
Sbjct: 71 GGGK 74

The following BLAST results are available for this feature:

BLAST of Lag0002111 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547529.1	7.0e-21	95.31	putative SERF-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022953785.1	7.0e-21	95.31	putative SERF-like protein [Cucurbita moschata]	[more]
KRH07555.1	9.2e-21	79.49	hypothetical protein GLYMA_16G094600v4, partial [Glycine max] >RZB60300.1 hypoth...	[more]
KHN26512.1	2.0e-20	71.59	hypothetical protein glysoja_047978, partial [Glycine soja]	[more]
XP_022991972.1	3.5e-20	93.75	putative SERF-like protein [Cucurbita maxima]	[more]

BLAST of Lag0002111 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 22..55 e-value: 4.4E-9 score: 37.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..65
None	No IPR available	PANTHER	PTHR13596:SF11	SERF-LIKE PROTEIN-RELATED	coord: 21..82
IPR040211	Small EDRK-rich factor 1/2	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 21..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002111.1	Lag0002111.1	mRNA