Lag0002109 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002109
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr4: 39394375 .. 39395412 (-)
RNA-Seq Expression	Lag0002109
Synteny	Lag0002109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCATGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATTTTTGAACTACGTTATGACTTGATTCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTACAAACAAAAAAAAAAGAAAGTGCAACAAATTTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGAAAGTTGCTTCCTCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGATTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

mRNA sequence

ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGATTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGATTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

Protein sequence

MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLPPKFEGSHALRYSSFLTVRRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEGSHALRCSFFSLSSKVLTRFDAVPSSLSSKILTRFAAVPSSKFEGFEGSHAL

Homology

[Close]

BLAST of Lag0002109 vs. NCBI nr
Match: KAA0032941.1 (hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-21
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 3  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL 62
          MA  KEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1  MATKKEENQCLTSTYTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKYLKAKP 60

Query: 63 FDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
          F E N D K+HSR+SSRMKRK SV INTEGS    P
Sbjct: 61 FHEENDDVKIHSRVSSRMKRKLSVNINTEGSFNMKP 96

[Close]

BLAST of Lag0002109 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-21
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 189

[Close]

BLAST of Lag0002109 vs. NCBI nr
Match: KAA0041771.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 6.2e-21
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  KEENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ 
Sbjct: 398 LSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKA 457

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+SSRMKRKFSV INTE SL   P
Sbjct: 458 KPFHEENDDDKIHSRVSSRMKRKFSVDINTEDSLTVKP 495

[Close]

BLAST of Lag0002109 vs. NCBI nr
Match: KAA0057874.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 8.1e-21
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 3  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL 62
          MA  +EENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1  MATKEEENQCPTSTCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKP 60

Query: 63 FDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
          F E N D K+H+R+SSRMKRK SV INTEGSL   P
Sbjct: 61 FHEENDDDKIHTRVSSRMKRKLSVDINTEGSLTVKP 96

[Close]

BLAST of Lag0002109 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 8.1e-21
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 248

[Close]

BLAST of Lag0002109 vs. ExPASy TrEMBL
Match: A0A5A7STU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00150 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 3  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL 62
          MA  KEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1  MATKKEENQCLTSTYTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKYLKAKP 60

Query: 63 FDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
          F E N D K+HSR+SSRMKRK SV INTEGS    P
Sbjct: 61 FHEENDDVKIHSRVSSRMKRKLSVNINTEGSFNMKP 96

[Close]

BLAST of Lag0002109 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 189

[Close]

BLAST of Lag0002109 vs. ExPASy TrEMBL
Match: A0A5A7TJH2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001260 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-21
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  KEENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ 
Sbjct: 398 LSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKA 457

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+SSRMKRKFSV INTE SL   P
Sbjct: 458 KPFHEENDDDKIHSRVSSRMKRKFSVDINTEDSLTVKP 495

[Close]

BLAST of Lag0002109 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 189

[Close]

BLAST of Lag0002109 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP 99
           K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 248

The following BLAST results are available for this feature:

BLAST of Lag0002109 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032941.1	3.6e-21	66.67	hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]	[more]
KAA0036008.1	4.7e-21	64.29	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0041771.1	6.2e-21	65.31	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0057874.1	8.1e-21	65.63	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	8.1e-21	64.29	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0002109 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0002109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STU1	1.8e-21	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SZJ7	2.3e-21	64.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TJH2	3.0e-21	65.31	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BBF9	3.9e-21	64.29	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TQ06	3.9e-21	64.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Lag0002109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002109.1	Lag0002109.1	mRNA