Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTGGCAAAGCTAAATGGAAAAGAATGGTATTTCTTCAGCTTTAGAGATAGAAAATATGCAACAGGAGAGAGGGCAAACCGTGCAACAATAGGAGGATACTGGAAAGCAACTGGAAAAGATCGAATGGTGATGAATCCAAAAACTCGTCAGATCATTGGAATGAGAAAAACTTTGGTATTTTACACAAAAAGAGCTCCAAATGGCATCAAAACTGGTTGGATTATGCATGAATTTCGGATTCAGACCCCACACATGCCCCCAAAGGTCTCCCTCTCTTTTTTAATTCCCTTTTAATTTCCATTCTTATCTACTTACTATCACAAAAATAATAAAAATACTTAAAAAAAAAAACTTACAGTAAATCAGAAAAAAAGTCTGAGATTCCATCTTAATTAGAGAAGAAGACATTCAAGATGAATGAAGGAAAAAAAAAGTGAATATAATTTCCTTATCCTCATCAATTTCTTATGCTATTTATTCACACCAACTTTTGCACATACAGGAGGACTGGGTTTTGTGCAGAGTCTTTTACAAGAGCAAGCGAGACGAGATCACCACAGACATAACACAGATCAATCAGGTGTTTGACATGGTGGCGCACACCTCCGCTTCGTCGTCGTTCTATTCGCCGTCGAGCTACGTCCAGTTTCCGACTGCACCGGACGCCAATAGGCTGCCATGGAACAACATCAATATGGAAGAAGAAGCTGGAGGCTTAAGGTCAAATGGAGTTGATGATTCAACCATACAGCAAATGAAGTTTGAGATTGAAGATAGCATCCAAAATGGCTTCTTCCCTTTTGAGTATTTTGATGCTTGA
mRNA sequence
GTGGCAAAGCTAAATGGAAAAGAATGGTATTTCTTCAGCTTTAGAGATAGAAAATATGCAACAGGAGAGAGGGCAAACCGTGCAACAATAGGAGGATACTGGAAAGCAACTGGAAAAGATCGAATGGTGATGAATCCAAAAACTCGTCAGATCATTGGAATGAGAAAAACTTTGGTATTTTACACAAAAAGAGCTCCAAATGGCATCAAAACTGGTTGGATTATGCATGAATTTCGGATTCAGACCCCACACATGCCCCCAAAGGAGGACTGGGTTTTGTGCAGAGTCTTTTACAAGAGCAAGCGAGACGAGATCACCACAGACATAACACAGATCAATCAGGTGTTTGACATGGTGGCGCACACCTCCGCTTCGTCGTCGTTCTATTCGCCGTCGAGCTACGTCCAGTTTCCGACTGCACCGGACGCCAATAGGCTGCCATGGAACAACATCAATATGGAAGAAGAAGCTGGAGGCTTAAGGTCAAATGGAGTTGATGATTCAACCATACAGCAAATGAAGTTTGAGATTGAAGATAGCATCCAAAATGGCTTCTTCCCTTTTGAGTATTTTGATGCTTGA
Coding sequence (CDS)
AGGTGGCAAAGCTAAATGGAAAAGAATGGTATTTCTTCAGCTTTAGAGATAGAAAATATGCAACAGGAGAGAGGGCAAACCGTGCAACAATAGGAGGATACTGGAAAGCAACTGGAAAAGATCGAATGGTGATGAATCCAAAAACTCGTCAGATCATTGGAATGAGAAAAACTTTGGTATTTTACACAAAAAGAGCTCCAAATGGCATCAAAACTGGTTGGATTATGCATGAATTTCGGATTCAGACCCCACACATGCCCCCAAAGGAGGACTGGGTTTTGTGCAGAGTCTTTTACAAGAGCAAGCGAGACGAGATCACCACAGACATAACACAGATCAATCAGGTGTTTGACATGGTGGCGCACACCTCCGCTTCGTCGTCGTTCTATTCGCCGTCGAGCTACGTCCAGTTTCCGACTGCACCGGACGCCAATAGGCTGCCATGGAACAACATCAATATGGAAGAAGAAGCTGGAGGCTTAAGGTCAAATGGAGTTGATGATTCAACCATACAGCAAATGAAGTTTGAGATTGAAGATAGCATCCAAAATGGCTTCTTCCCTTTTGAGTATTTTGATGCTTGA
Protein sequence
VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVFYTKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTDITQINQVFDMVAHTSASSSFYSPSSYVQFPTAPDANRLPWNNINMEEEAGGLRSNGVDDSTIQQMKFEIEDSIQNGFFPFEYFDA
Homology
BLAST of Lag0002068 vs. NCBI nr
Match:
XP_038897326.1 (NAC domain-containing protein 21/22-like [Benincasa hispida])
HSP 1 Score: 299.3 bits (765), Expect = 2.4e-77
Identity = 149/196 (76.02%), Postives = 161/196 (82.14%), Query Frame = 0
Query: 1 VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVF 60
VAKLNGKEWYFFSFRDRKY GERANRATI GYWKATGKDRMV NPK+ +++GMRKTLVF
Sbjct: 58 VAKLNGKEWYFFSFRDRKYGKGERANRATIEGYWKATGKDRMVKNPKSGEVMGMRKTLVF 117
Query: 61 YTKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTDITQINQVFDMVA 120
Y KRAPNGIKT WIMHEFRIQ P +PPKEDWVLCRVF+KSKRDEIT +IT IN+ FD +
Sbjct: 118 YRKRAPNGIKTPWIMHEFRIQNPRLPPKEDWVLCRVFHKSKRDEITMEITPINRGFDTLP 177
Query: 121 HTSASSSFYSPSSYVQFPTAPDANRLPWNNINME-EEAGGLRSNGVDD--STIQQMKFEI 180
SASS SP SY+QFP A D N+LPWNNIN E A G+R N VD STIQQMKFEI
Sbjct: 178 PASASSLLCSPLSYIQFPPAADTNKLPWNNINNNVEVAEGIRLNEVDHDYSTIQQMKFEI 237
Query: 181 EDSIQNGFFPFEYFDA 194
EDSIQN FFPFEYF A
Sbjct: 238 EDSIQNDFFPFEYFIA 253
BLAST of Lag0002068 vs. NCBI nr
Match:
XP_022155089.1 (NAC domain-containing protein 21/22-like [Momordica charantia] >XP_022155090.1 NAC domain-containing protein 21/22-like [Momordica charantia])
HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 147/196 (75.00%), Postives = 158/196 (80.61%), Query Frame = 0
Query: 1 VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVF 60
VAKLN EWYFFSF+DRKYATG RANRATIGGYWKATGKDR VMNPKT +++GMRKTLVF
Sbjct: 58 VAKLNRNEWYFFSFQDRKYATGVRANRATIGGYWKATGKDRTVMNPKTSEVMGMRKTLVF 117
Query: 61 YTKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTD-ITQINQVFDMV 120
Y KRAPNGIKTGWIMHEFRIQTPHM PK DWVLCRVF +SKRDEITT T I +
Sbjct: 118 YRKRAPNGIKTGWIMHEFRIQTPHMSPKADWVLCRVFPQSKRDEITTQTATHIYRPITFD 177
Query: 121 AHTSASSSFYSPSSYVQFPTAPDANRLPWNNINM--EEEAGGLRSNGVDDSTIQQMKFEI 180
A T A SSFYS S+VQFP A D N LP+NN+N+ E EAGGL SNGVDDST QQ KFE
Sbjct: 178 AATPAPSSFYSLPSHVQFPPAADVNMLPFNNVNLEVEAEAGGLISNGVDDSTTQQRKFES 237
Query: 181 EDSIQNGFFPFEYFDA 194
ED IQNGFF F+YF A
Sbjct: 238 EDCIQNGFFHFDYFVA 253
BLAST of Lag0002068 vs. NCBI nr
Match:
XP_023548957.1 (NAC domain-containing protein 21/22-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 282.0 bits (720), Expect = 4.0e-72
Identity = 141/191 (73.82%), Postives = 152/191 (79.58%), Query Frame = 0
Query: 2 AKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVFY 61
AKLNGKEWYFFSFRDRKYATG+RANRAT+ GYWKATGKDR VMNPKT Q+IGMRKTLVFY
Sbjct: 59 AKLNGKEWYFFSFRDRKYATGQRANRATLEGYWKATGKDRTVMNPKTGQVIGMRKTLVFY 118
Query: 62 TKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTDITQINQVFDMVAH 121
KRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSK DEITT T+I+Q FDM A
Sbjct: 119 RKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKPDEITTGTTKIHQTFDMAAP 178
Query: 122 TSASSSFYSPSSYVQFPTAPDANRLPWNNI-NMEEEAGGLRSNGVDDSTIQQMKFEIEDS 181
SSS Y S+ VQ P+ D NR+ W NI N++EEAGG FEIEDS
Sbjct: 179 VPISSSSYLASN-VQLPSVEDGNRVSWKNINNVDEEAGG---------------FEIEDS 233
Query: 182 IQNGFFPFEYF 192
IQNGFFP+EYF
Sbjct: 239 IQNGFFPYEYF 233
BLAST of Lag0002068 vs. NCBI nr
Match:
KAG7014527.1 (NAC domain-containing protein 21/22, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 276.2 bits (705), Expect = 2.2e-70
Identity = 137/189 (72.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 2 AKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVFY 61
AKLNGKEWYFFSFRDRKYATG+RANRAT+ GYWKATGKDR VMNPKT ++IGMRKTLVFY
Sbjct: 59 AKLNGKEWYFFSFRDRKYATGQRANRATLEGYWKATGKDRTVMNPKTGEVIGMRKTLVFY 118
Query: 62 TKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTDITQINQVFDMVAH 121
KRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSK DEITT T+INQ FDM A
Sbjct: 119 RKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKPDEITTGTTKINQTFDMAAP 178
Query: 122 TSASSSFYSPSSYVQFPTAPDANRLPWNNINMEEEAGGLRSNGVDDSTIQQMKFEIEDSI 181
SSS Y +S VQ P+A D N + W NIN ++A G FEIEDSI
Sbjct: 179 VPISSSSYL-ASIVQLPSADDGNGVSWKNINNVDKAAG--------------GFEIEDSI 232
Query: 182 QNGFFPFEY 191
QNGFFP+EY
Sbjct: 239 QNGFFPYEY 232
BLAST of Lag0002068 vs. NCBI nr
Match:
KAG6576006.1 (NAC domain-containing protein 21/22, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 276.2 bits (705), Expect = 2.2e-70
Identity = 137/189 (72.49%), Postives = 148/189 (78.31%), Query Frame = 0
Query: 2 AKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVFY 61
AKLNGKEWYFFSFRDRKYATG+RANRAT+ GYWKATGKDR VMNPKT ++IGMRKTLVFY
Sbjct: 59 AKLNGKEWYFFSFRDRKYATGQRANRATLEGYWKATGKDRTVMNPKTGEVIGMRKTLVFY 118
Query: 62 TKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKRDEITTDITQINQVFDMVAH 121
KRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSK DEITT T INQ+FDM A
Sbjct: 119 RKRAPNGIKTGWIMHEFRIQTPHMPPKEDWVLCRVFYKSKPDEITTGTTNINQMFDMAAP 178
Query: 122 TSASSSFYSPSSYVQFPTAPDANRLPWNNINMEEEAGGLRSNGVDDSTIQQMKFEIEDSI 181
SSS Y +S VQ P+A D N + W NIN ++A G FEIEDSI
Sbjct: 179 VPISSSSYL-ASIVQLPSADDGNGVSWKNINNVDKAAG--------------GFEIEDSI 232
Query: 182 QNGFFPFEY 191
QNGFFP+EY
Sbjct: 239 QNGFFPYEY 232
BLAST of Lag0002068 vs. ExPASy Swiss-Prot
Match:
Q84TE6 (NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE=1 SV=2)
HSP 1 Score: 142.9 bits (359), Expect = 3.8e-33
Identity = 75/150 (50.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query: 1 VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVF 60
+A + GK+WYF+S RDRKYATG R NRAT GYWKATGKDR ++ + +++GMRKTLVF
Sbjct: 68 MACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTIL--RKGKLVGMRKTLVF 127
Query: 61 YTKRAPNGIKTGWIMHEFRIQTPHMP-------PKEDWVLCRVFYKSKRDEITTDITQIN 120
Y RAP G KT W+MHEFR+Q H P PKEDWVLCRVF+K+ I D +
Sbjct: 128 YQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGVICRD--NMG 187
Query: 121 QVFDMVAHTSASSSFYSPSSYVQFPTAPDA 144
FD A S Y+ F P +
Sbjct: 188 SCFDETASASLPPLM---DPYINFDQEPSS 210
BLAST of Lag0002068 vs. ExPASy Swiss-Prot
Match:
Q9S851 (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana OX=3702 GN=NAC031 PE=1 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0
Query: 1 VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVF 60
+AK+ +EWYF+S RDRKY TG R NRAT GYWKATGKD+ V + Q++GM+KTLVF
Sbjct: 70 MAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVF 129
Query: 61 YTKRAPNGIKTGWIMHEFRIQTPHM---PPKEDWVLCRVFYKS 101
Y RAP G+KT W+MHE+R++ H KE+WV+CRVF K+
Sbjct: 130 YKGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKT 172
BLAST of Lag0002068 vs. ExPASy Swiss-Prot
Match:
Q5CD17 (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC077 PE=2 SV=2)
HSP 1 Score: 127.5 bits (319), Expect = 1.7e-28
Identity = 70/157 (44.59%), Postives = 93/157 (59.24%), Query Frame = 0
Query: 2 AKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVM--------------NPK 61
AK+ KEWYFFS +D KY TG R NRAT GYWKATGKDR + + K
Sbjct: 68 AKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNK 127
Query: 62 TRQIIGMRKTLVFYTKRAPNGIKTGWIMHEFRIQT---PHMP-----PKEDWVLCRVFYK 121
+Q++GM+KTLVFY RAP G KT W+MHEFR+ H P PK++WV+C+VF+K
Sbjct: 128 KKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHK 187
Query: 122 SKRDEITTDITQINQVFDMVAHTSASSSFYSPSSYVQ 137
+ DE + Q Q + +++ + + S SS VQ
Sbjct: 188 KQGDEAINNQQQQPQYAAVDQYSAETPN--SGSSVVQ 222
BLAST of Lag0002068 vs. ExPASy Swiss-Prot
Match:
O04017 (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 0
Query: 2 AKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVFY 61
AK+ KEWYFFS RDRKY TG R NRAT GYWKATGKDR + + KT ++GM+KTLVFY
Sbjct: 66 AKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFY 125
Query: 62 TKRAPNGIKTGWIMHEFRIQTP------HMPPKEDWVLCRVFYKS 101
RAP G K+ W+MHE+R++ K++WV+ RVF K+
Sbjct: 126 KGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170
BLAST of Lag0002068 vs. ExPASy Swiss-Prot
Match:
Q9SQQ6 (NAC domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=NAC046 PE=1 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 2.8e-28
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = 0
Query: 1 VAKLNGKEWYFFSFRDRKYATGERANRATIGGYWKATGKDRMVMNPKTRQIIGMRKTLVF 60
+AK+ KE+YFF RDRKY TG R NRAT+ GYWKATGKD+ + K ++GM+KTLVF
Sbjct: 68 IAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGK-GCLVGMKKTLVF 127
Query: 61 YTKRAPNGIKTGWIMHEFRIQ---TPHMPPK---EDWVLCRVFYKSKRDEITTDITQINQ 120
YT RAP G KT W+MHE+R+ + H PK ++WV+CRVF+K+ T Q+++
Sbjct: 128 YTGRAPKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNAPSTTITTTKQLSR 187
Query: 121 V--FDMVAHTSASSS 128
+ D + H SS
Sbjct: 188 IDSLDNIDHLLDFSS 201
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038897326.1 | 2.4e-77 | 76.02 | NAC domain-containing protein 21/22-like [Benincasa hispida] | [more] |
XP_022155089.1 | 1.1e-74 | 75.00 | NAC domain-containing protein 21/22-like [Momordica charantia] >XP_022155090.1 N... | [more] |
XP_023548957.1 | 4.0e-72 | 73.82 | NAC domain-containing protein 21/22-like [Cucurbita pepo subsp. pepo] | [more] |
KAG7014527.1 | 2.2e-70 | 72.49 | NAC domain-containing protein 21/22, partial [Cucurbita argyrosperma subsp. argy... | [more] |
KAG6576006.1 | 2.2e-70 | 72.49 | NAC domain-containing protein 21/22, partial [Cucurbita argyrosperma subsp. soro... | [more] |
Match Name | E-value | Identity | Description | |
Q84TE6 | 3.8e-33 | 50.00 | NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE... | [more] |
Q9S851 | 1.8e-30 | 57.28 | Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana OX=3702 GN=NAC031 PE=1 SV... | [more] |
Q5CD17 | 1.7e-28 | 44.59 | NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC... | [more] |
O04017 | 2.2e-28 | 55.24 | Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV... | [more] |
Q9SQQ6 | 2.8e-28 | 48.15 | NAC domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=NAC046 PE=1 ... | [more] |