Lag0002059 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002059
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontranscription initiation factor TFIID subunit 1 isoform X1
Locationchr4: 38865317 .. 38868531 (+)
RNA-Seq ExpressionLag0002059
SyntenyLag0002059
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGAAACATATGGTGATTCCCAAGACGAAAGGGATGAAGGTAAGCCAGTTGATTTAACGAGTTTTAGGTTATTTGTTTGAATGAATTTGTTATTATTATTATTTTAATTTTTAATGTTAGGAAGTTTATGGTTTGATGGTCTAAACATCTTTTCTTTCGTACTGTTCTCTTCATCTTAGGTATGAATGAGGTTGGTGGAGTAAACTGAAATTATGAGTTTTTATTAATATCAAATCTGGTAGTCTGTACCTTTGTTCAAATAACATCTGGTATTTGATACCCGGGGTGTCTTATTTATAGGCTTAGTATGACAATGAAGTCAAAATATATGACAGTGAACTCGTAGTGAACGATGAGACTCCTTAATTCTAATCCCCACTGTAATTATACTAATGTATACTAATATTAAGTAACTAGTCACTCATGGTAATTGAATTAGGCACGAGTTACCCACATCAGTTTCCTCCCCTTCCCCCCAACAAAAGTACCTGTTCTATAGCATAAGCATTAGGGCCCACTTTGTTAAGATCCGGATGTAGTTCAATCTGATGTAGGGATTTCAGGCAATATAGGTTTTTAGGCAATGAAGGATGTTTGGAAATTTTTTAGAATACATACTGAGGTATTTTTAGAATACATGATGAAGGATATGTGGAACGTCCACATGTTTTGTATGTCACTCCTACTTTAAATGCTGCGGATCTCCAAGAAGAGTAAACACCAGACTGGTTTGTATATCTACGTAACTCATGGGTGTGTTATTTTTTGGTGGTGGAAGGGGTGAGGGAGGAAATTGATGTAGGATTTTAAACAATGAGGTTGTTAGGTTGTTTGTTGTGTTAATTGTTATATATATATATATATATATATATTATAATGATAGCAAACAAAAACCATTTCATATGAAATAGATACAAAAGTAGGTCCTATATGTGATAGTTACAAAAAAGAGATATCCATTGAGATATAAGGGTTGATAGTCCATAATTACGAAAGGGAGGAGATAATGCAAAGTAGGGAGTAGACTCAATGAAGGAGATAGTTATTCTGTTGCCTATCTGTAAAGACTTGAGCATTTCTTTCCATCCATAAATTCCAGAGAAAAGCATTATGTTTTTCCCCCTTTTTTTTGGAGTGCATCCTTTCTTTCTCTTGGTTTCTGCCGTATGTTGTCCGATAGGGGACGACATATATTGTAGCCCTCTTATCTTTGATTGAGGAGTTTTTAGTTGGCCATGGGAGAGGGGATTATCATCTTTGGGATCTAGCCTTATGCTCTCTGATTGAGGACTTGTTCCTTAATCTACCTTTTCGTGTTAAAGGACATTTTTTGTGGCTCATCGGGGTTTGTGCGATTTTGTGGGGCCCTTGGGCGGGGAAGAACAATAGAATTTTTTGGGAGTTGAGAGACCTAAGGAGGAGGTGTGGTTTCACGTTTATTTTGTAATAATTATTCTATAGGTTTCATTCTTTTGGATTGGAACCCCTTTATCTAATGGGGTCTCTTTTTTGGGGGGGGGTTGATATTTTTTGTTTGCGGGTATTCTTTCATTCATTCTCAATGAAAGTGTGGTCCATTATCAAAAACGTTTCCATTTTGGCTTCGATCTCTAAGCAAGTCTTATTTTGCTCGATCAGAGCCATTTTTTTTTTCTAGTTTGGCTCTTTTTGGTGTGGATGCTCCTTGTATTCTTTCCATTTATTCCCCATGGAAGGTTTGATTTTCTCATTTTAAAAAAAGAGAAGCTAATCCCTTGGATTGTATCCTAAGGTAGTCTTTTGTGCTGTCTCCTTTGTAGTAGGGCATTATAGGATATTGATCACATTCTTGGGAGTTGCTAGTTTGCGTTTTCGGTCTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTCCAAGTGTTTGGTTTTTTATTAGGTCGACATAGAGAATTAGGTCCATGATGGAAAGAGTTTCTTCAAACCGTTGAGGGTCTCCTTTCGTGGCTTGCTGGGGTTAATGTTATTCTGTGAGGCTTTGGTTAGAGAGAAATGATAAGATTTTTATGAGGATTGAGAGATTGAGTGAGAAGGTGTTGTCTCTTTAAGGTTTCATGTTTCTCTTTGAACTTTTGGTGCATAGGGACTTTGTAATTATCGTTTAGGTCTTATTTTGTTAAGATCGGAACCCTTTCTTGTTTTAGTTTGACTTCTTTTGTTGGACTGTATTTTTGTATACCCTTTGTATTCTTTTATTCAATCAATCAAAGCATGGTTTCTCATTCACAAAAAAATTTGGGGAAAATAATTTTAATTTGAACAGTAATGTTATTAACTTTTACAAGTCATTCAGCCACAATGACGTAATTAACTTTCACAATTTTCAAAATCCATTTTGAAAACTAACAAATATTGTATATTGTTGTGGATCGTGAGTAGAAAACCATGCATTATATACTTATGATATTTTGTCTGCAGATGACGACGACTATGAGGATGCTGGTGGTGGCAATCGATTCTTGGGGTTTATGTTCGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGTAATATTATTGCTCCTTGTGGCATTTTTGTAGAACTAGATTTGTTAGAGGACAATGTGCCTGAAATATGTAAGCTGTGAGCTCATTCTAGTGGAAGATTTCCACACGGAAATGCTGGTTTTGGCACCATAGGTTTTGCAAATGGACTTGTTATCTTCCAAATATGAGCTTTTGCATTCTGCAAATTCTGGAGAAAGCCTTAACTTGTTACACTTGTAATGAGTAGTTCTTTAAATAATCTGACCTTTCATCTTATTTTTCTGACCCTTAAGTTCTGATCAATATTGTATTATGGATGCTGAAGATATAATCTTCTGTTTTTAGGATGCTAAGGAACATCTAGATGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAAGTCATTTATGATTCTGAATATTATATAGTTTTCACTTGGTTTTGGGGTCTTCGTATGTAGCTTCTTGTGTTTGTATACCATCTCTCATTTCATTTCTCTTCAATAACATAAAACTACTGAATCTTTCCCCTTCTACCTTTTTTCTTTGATGCCTGCACTTTTTCAATTTTTTCAGTTGTCAACGAAGTCACCAAAAGTACCATCGGATGCTGTTGAACCAGGTGAAGTTGTATTCATGGGAAAATTTACCCAGTAG

mRNA sequence

ATGGGTGGCGAAACATATGGTGATTCCCAAGACGAAAGGGATGAAGATGACGACGACTATGAGGATGCTGGTGGTGGCAATCGATTCTTGGGGTTTATGTTCGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCTAAGGAACATCTAGATGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATTTGTCAACGAAGTCACCAAAAGTACCATCGGATGCTGTTGAACCAGGTGAAGTTGTATTCATGGGAAAATTTACCCAGTAG

Coding sequence (CDS)

ATGGGTGGCGAAACATATGGTGATTCCCAAGACGAAAGGGATGAAGATGACGACGACTATGAGGATGCTGGTGGTGGCAATCGATTCTTGGGGTTTATGTTCGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCTAAGGAACATCTAGATGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATTTGTCAACGAAGTCACCAAAAGTACCATCGGATGCTGTTGAACCAGGTGAAGTTGTATTCATGGGAAAATTTACCCAGTAG

Protein sequence

MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEPGEVVFMGKFTQ
Homology
[Close]
BLAST of Lag0002059 vs. NCBI nr
Match: XP_023513701.1 (transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513702.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513703.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513704.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 9.4e-38
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60
          MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61 DKLGPTLTDIDLSTKSPKVPSDAVEP 87
          DKLGPTLTDIDLSTKSPK+PSDAVEP
Sbjct: 61 DKLGPTLTDIDLSTKSPKIPSDAVEP 86

[Close]
BLAST of Lag0002059 vs. NCBI nr
Match: KAG6593022.1 (Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60
          MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61 DKLGPTLTDIDLSTKSPKVPSDAVEP 87
          DKLGPTLTDIDLSTKSPK+PSDA+EP
Sbjct: 61 DKLGPTLTDIDLSTKSPKIPSDAIEP 86

[Close]
BLAST of Lag0002059 vs. NCBI nr
Match: KAG7025432.1 (Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60
          MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61 DKLGPTLTDIDLSTKSPKVPSDAVEP 87
          DKLGPTLTDIDLSTKSPK+PSDA+EP
Sbjct: 61 DKLGPTLTDIDLSTKSPKIPSDAIEP 86

[Close]
BLAST of Lag0002059 vs. NCBI nr
Match: XP_022959797.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959798.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959799.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959800.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60
          MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61 DKLGPTLTDIDLSTKSPKVPSDAVEP 87
          DKLGPTLTDIDLSTKSPK+PSDA+EP
Sbjct: 61 DKLGPTLTDIDLSTKSPKIPSDAIEP 86

[Close]
BLAST of Lag0002059 vs. NCBI nr
Match: XP_023004897.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004898.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004899.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004900.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 8.0e-37
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60
          MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60

Query: 61 DKLGPTLTDIDLSTKSPKVPSDAVEP 87
          DKLG TLTDIDLSTKSPK+PSDAVEP
Sbjct: 61 DKLGSTLTDIDLSTKSPKIPSDAVEP 86

[Close]
BLAST of Lag0002059 vs. ExPASy Swiss-Prot
Match: Q67W65 (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 14 DEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLS 73
          D+DD+DY++ GGGN FLGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DIDL 
Sbjct: 19 DDDDEDYDEPGGGNHFLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDL- 78

Query: 74 TKSPKVPSDAVE 86
           K    P+D  E
Sbjct: 79 IKPSAAPTDPSE 89

[Close]
BLAST of Lag0002059 vs. ExPASy Swiss-Prot
Match: Q8LRK9 (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 GN=TAF1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-17
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 0 

Query: 7  GDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPT 66
          G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL ALADKLG +
Sbjct: 8  GSHNETSSDDDDEYEDNSRGFN-LGFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSS 67

Query: 67 LTDIDLSTKSPKVPSDAVE 86
          L DI+L  KS +  SD  E
Sbjct: 68 LPDINLLAKSERTASDPAE 85

The following BLAST results are available for this feature:
BLAST of Lag0002059 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023513701.19.4e-3896.51transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP... [more]
KAG6593022.11.2e-3795.35Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma... [more]
KAG7025432.11.2e-3795.35Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. a... [more]
XP_022959797.11.2e-3795.35transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] ... [more]
XP_023004897.18.0e-3795.35transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >X... [more]
BLAST of Lag0002059 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q67W651.3e-2173.61Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ... [more]
Q8LRK91.5e-1763.29Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036741TAFII-230 TBP-binding domain superfamilyGENE3D1.10.1100.10coord: 21..67
e-value: 1.9E-6
score: 30.0
IPR036741TAFII-230 TBP-binding domain superfamilySUPERFAMILY47055TAF(II)230 TBP-binding fragmentcoord: 22..61
IPR009067TAFII-230 TBP-bindingPFAMPF09247TBP-bindingcoord: 18..61
e-value: 9.0E-11
score: 41.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR13900:SF3BNAA01G26290D PROTEINcoord: 12..85
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 12..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002059.1Lag0002059.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
biological_process GO:0006413 translational initiation
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0017025 TBP-class protein binding
molecular_function GO:0003743 translation initiation factor activity