Lag0002049 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002049
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionExtracellular ligand-binding receptor
Locationchr4: 38748869 .. 38749423 (+)
RNA-Seq ExpressionLag0002049
SyntenyLag0002049
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTATTCCTCCCTTAGCTTCAACTCTTCTCCTCCTCCTCCTCCTAATCCCATCTCTCAAACTCCTCATCAATGGCCTCAACTCCCTATCCACTCTGGCTCTCTGCCTGTTCTTCAAGGCTCCACCTTGCGTTCTTCTCTCACTTCTCAAGGGCCTCAAGCTCCCTGCAGAGGCCCTTCTCAGCGCGTCTCAGAGCCTTGCCGAAGCCTTGAGGTGGGCTCTGGTGAGCGCGATCGAGATGGGTTTGGGGATTTTGAGCTCTTTTGCCATGGCCGTGTTGGGGGTTGTGAAGAATGTGGTTTTTGGTTCTTTTGCTGAGTCTGGTTCGGCCTTTGGTGGCCTTTTGGACAAGACTAAGGCTTCTTGGGAAGGGTCGTCCTTGTTCGAACAACTGCGGGAGATTGTTGGGAGCGTTTGTGAGAAGCTGCTTGACCAGGTTTTGGACACGGCTGCCTCTTCTGCAGGTAGGGATCGTGATATCGAGAATAATGTGCATGAAAAGTTCTTTTCTTTGTTCTAG

mRNA sequence

ATGTCTTGTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTATTCCTCCCTTAGCTTCAACTCTTCTCCTCCTCCTCCTCCTAATCCCATCTCTCAAACTCCTCATCAATGGCCTCAACTCCCTATCCACTCTGGCTCTCTGCCTGTTCTTCAAGGCTCCACCTTGCGTTCTTCTCTCACTTCTCAAGGGCCTCAAGCTCCCTGCAGAGGCCCTTCTCAGCGCGTCTCAGAGCCTTGCCGAAGCCTTGAGGTGGGCTCTGGTGAGCGCGATCGAGATGGGTTTGGGGATTTTGAGCTCTTTTGCCATGGCCGTGTTGGGGGTTGTGAAGAATGTGGTTTTTGGTTCTTTTGCTGAGTCTGGTTCGGCCTTTGGTGGCCTTTTGGACAAGACTAAGGCTTCTTGGGAAGGGTCGTCCTTGTTCGAACAACTGCGGGAGATTGTTGGGAGCGTTTGTGAGAAGCTGCTTGACCAGGTTTTGGACACGGCTGCCTCTTCTGCAGGTAGGGATCGTGATATCGAGAATAATGTGCATGAAAAGTTCTTTTCTTTGTTCTAG

Coding sequence (CDS)

ATGTCTTGTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTATTCCTCCCTTAGCTTCAACTCTTCTCCTCCTCCTCCTCCTAATCCCATCTCTCAAACTCCTCATCAATGGCCTCAACTCCCTATCCACTCTGGCTCTCTGCCTGTTCTTCAAGGCTCCACCTTGCGTTCTTCTCTCACTTCTCAAGGGCCTCAAGCTCCCTGCAGAGGCCCTTCTCAGCGCGTCTCAGAGCCTTGCCGAAGCCTTGAGGTGGGCTCTGGTGAGCGCGATCGAGATGGGTTTGGGGATTTTGAGCTCTTTTGCCATGGCCGTGTTGGGGGTTGTGAAGAATGTGGTTTTTGGTTCTTTTGCTGAGTCTGGTTCGGCCTTTGGTGGCCTTTTGGACAAGACTAAGGCTTCTTGGGAAGGGTCGTCCTTGTTCGAACAACTGCGGGAGATTGTTGGGAGCGTTTGTGAGAAGCTGCTTGACCAGGTTTTGGACACGGCTGCCTCTTCTGCAGGTAGGGATCGTGATATCGAGAATAATGTGCATGAAAAGTTCTTTTCTTTGTTCTAG

Protein sequence

MSCSSSSSSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSLLKGLKLPAEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAESGSAFGGLLDKTKASWEGSSLFEQLREIVGSVCEKLLDQVLDTAASSAGRDRDIENNVHEKFFSLF
Homology
BLAST of Lag0002049 vs. NCBI nr
Match: XP_022991981.1 (uncharacterized protein LOC111488468 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48
Identity = 120/160 (75.00%), Postives = 131/160 (81.88%), Query Frame = 0

Query: 8   SSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSLLKGLKLP 67
           SSSC  IP LASTLLLLLLLIPSLKLLINGLNSL TL  CLFFKAPPCVL+SLL  L+ P
Sbjct: 2   SSSC--IPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPP 61

Query: 68  AEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAESGSAFGGLL 127
           AEA L A QSLA+AL+W  VS +EMGLGI+ SF MAVLG +KNVVFGSF E GSAFGGLL
Sbjct: 62  AEASLGALQSLADALKWVCVSTVEMGLGIIGSFLMAVLGALKNVVFGSFREFGSAFGGLL 121

Query: 128 DKTKASWEGSSLFEQLREIVGSVCEKLLDQVLDTAASSAG 168
           DK KAS EG SL EQ+REI+G V  K+LD VL+TA SSAG
Sbjct: 122 DKPKASGEG-SLLEQVREIIGFVSSKILDHVLETATSSAG 158

BLAST of Lag0002049 vs. NCBI nr
Match: XP_022954027.1 (uncharacterized protein LOC111456411 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-46
Identity = 117/160 (73.12%), Postives = 131/160 (81.88%), Query Frame = 0

Query: 8   SSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSLLKGLKLP 67
           SSSC  IP LASTLLLLLLLIPSLKLLINGLNSL TL  CLFFKAPPCVL+SLL  L+ P
Sbjct: 2   SSSC--IPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPP 61

Query: 68  AEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAESGSAFGGLL 127
           AEA L A QSLA+AL+W  VS++EMGLGI+ SF MAVLG +KNVVFGSF E GS FGGLL
Sbjct: 62  AEASLGALQSLADALKWVFVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLL 121

Query: 128 DKTKASWEGSSLFEQLREIVGSVCEKLLDQVLDTAASSAG 168
           DK +AS EG SL E +REI+G V  K+LD+VL+TA SSAG
Sbjct: 122 DKPQASGEG-SLLELVREIIGFVSSKILDRVLETATSSAG 158

BLAST of Lag0002049 vs. NCBI nr
Match: KAG6576012.1 (hypothetical protein SDJN03_26651, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.7e-46
Identity = 118/160 (73.75%), Postives = 130/160 (81.25%), Query Frame = 0

Query: 8   SSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSLLKGLKLP 67
           SSSC  IP LASTLLLLLLLIPSLKLLINGLNSL TL  CLFFKAP CVL+SLL  L+ P
Sbjct: 2   SSSC--IPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPTCVLVSLLNALRPP 61

Query: 68  AEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAESGSAFGGLL 127
           AEA L A QSLA+AL+W  VS +EMGLGI+ SF MAVLG +KNVVFGSF E GSAFG LL
Sbjct: 62  AEASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGEFGSAFGRLL 121

Query: 128 DKTKASWEGSSLFEQLREIVGSVCEKLLDQVLDTAASSAG 168
           DK KAS EG SL EQ+REI+G V  K+LD VL+TA+SSAG
Sbjct: 122 DKPKASGEG-SLLEQVREIIGFVSSKILDHVLETASSSAG 158

BLAST of Lag0002049 vs. NCBI nr
Match: XP_011659765.2 (uncharacterized protein LOC105436268 [Cucumis sativus] >KAE8646263.1 hypothetical protein Csa_016506 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-42
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 0

Query: 1   MSCSSSSSSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSL 60
           M CSSSSS+    I  + ST LLLLLLIPSLK++ING NSLSTLA+CLF KAPPC++LS 
Sbjct: 1   MPCSSSSSN----ISHMVSTFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLILSF 60

Query: 61  LKGLKLPAEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAE-S 120
           LK +KLPAEA LSA QSL EAL+   VS IEMG GI+SSF M VL  V NVVFGSF E S
Sbjct: 61  LKAIKLPAEAFLSAFQSLGEALKSIFVSTIEMGFGIISSFVMGVLEAVMNVVFGSFVESS 120

Query: 121 GSAFGGLLDKTKASWEGSSLFEQLREIVGSVCEKLLDQVLDTAASSAG 168
            SAFGGLL+ TK SWEG +LFEQ+R I+ S CE +L QV + A S AG
Sbjct: 121 ASAFGGLLENTKGSWEGFNLFEQVRGIIESFCEFVLQQVWEIATSFAG 164

BLAST of Lag0002049 vs. NCBI nr
Match: KAG7014533.1 (hypothetical protein SDJN02_24711, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-39
Identity = 111/177 (62.71%), Postives = 127/177 (71.75%), Query Frame = 0

Query: 8   SSSCSIIPPLASTLLLLLLLIPSLKLLINGLNSLSTLALCLFFKAPPCVLLSLLKGLKLP 67
           SSSC  IP LASTLLLLLLLIPSLKLLINGLNSL TL  CLFFKAPPCVL+SLL  L+ P
Sbjct: 2   SSSC--IPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPP 61

Query: 68  AEALLSASQSLAEALRWALVSAIEMGLGILSSFAMAVLGVVKNVVFGSFAESGSAFGGLL 127
           AEA L A QSLA+AL+W  VS +EMGLGI+ SF MAVLG +KNVVFGSF E GS FGGLL
Sbjct: 62  AEASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLL 121

Query: 128 DKTKASWEG-SSLFEQLREIVGSVCEKLLDQVLDTAASSAGRDRDIENNVHEKFFSL 184
           DK +AS EG S+L       +G +   +L  +L+   SS G  R I  ++ EK   L
Sbjct: 122 DKPQASGEGISALLNDPGSAMGKLV-GILKGLLEGTGSSMGGVRGIVESLVEKVAEL 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022991981.18.5e-4875.00uncharacterized protein LOC111488468 [Cucurbita maxima][more]
XP_022954027.11.6e-4673.13uncharacterized protein LOC111456411 [Cucurbita moschata][more]
KAG6576012.12.7e-4673.75hypothetical protein SDJN03_26651, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011659765.23.1e-4266.07uncharacterized protein LOC105436268 [Cucumis sativus] >KAE8646263.1 hypothetica... [more]
KAG7014533.13.3e-3962.71hypothetical protein SDJN02_24711, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002049.1Lag0002049.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane