Lag0002015 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0002015
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionacidic repeat-containing protein
Locationchr4: 38265569 .. 38265904 (+)
RNA-Seq ExpressionLag0002015
SyntenyLag0002015
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCTGTACCTAAAAGCCAGAAGAGAATTGTGGTGGCTTTGACATGTAGAAGAACTGAGACTCGGAATAATGGAGCTATAGTGCAACGAGTGTATAGTACAAGAAGGTCTGTTAGATTGTTGGAGAAGAACATGGAGAGCTTGAGTTTAGGGGAAGATGGGAAAATGGAGCCAATTACTGTCCATATGTCGTTCGATGAAATGCCCAACAGTACAGGACTCATGAAGGAGGACATGGACTTAGAAATTAAGTCAAAGAAAACCGATGAATCAGTAAGCAAATTAGAGGAGGATTTGGATTTGGAAATTGATGATCCACGCCGAAGAAAATGA

mRNA sequence

ATGCCTGCTGTACCTAAAAGCCAGAAGAGAATTGTGGTGGCTTTGACATGTAGAAGAACTGAGACTCGGAATAATGGAGCTATAGTGCAACGAGTGTATAGTACAAGAAGGTCTGTTAGATTGTTGGAGAAGAACATGGAGAGCTTGAGTTTAGGGGAAGATGGGAAAATGGAGCCAATTACTGTCCATATGTCGTTCGATGAAATGCCCAACAGTACAGGACTCATGAAGGAGGACATGGACTTAGAAATTAAGTCAAAGAAAACCGATGAATCAGTAAGCAAATTAGAGGAGGATTTGGATTTGGAAATTGATGATCCACGCCGAAGAAAATGA

Coding sequence (CDS)

ATGCCTGCTGTACCTAAAAGCCAGAAGAGAATTGTGGTGGCTTTGACATGTAGAAGAACTGAGACTCGGAATAATGGAGCTATAGTGCAACGAGTGTATAGTACAAGAAGGTCTGTTAGATTGTTGGAGAAGAACATGGAGAGCTTGAGTTTAGGGGAAGATGGGAAAATGGAGCCAATTACTGTCCATATGTCGTTCGATGAAATGCCCAACAGTACAGGACTCATGAAGGAGGACATGGACTTAGAAATTAAGTCAAAGAAAACCGATGAATCAGTAAGCAAATTAGAGGAGGATTTGGATTTGGAAATTGATGATCCACGCCGAAGAAAATGA

Protein sequence

MPAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPITVHMSFDEMPNSTGLMKEDMDLEIKSKKTDESVSKLEEDLDLEIDDPRRRK
Homology
[Close]
BLAST of Lag0002015 vs. NCBI nr
Match: XP_011654865.2 (probable serine/threonine-protein kinase kinX isoform X2 [Cucumis sativus] >KAE8647937.1 hypothetical protein Csa_000497 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 4.4e-31
Identity = 77/110 (70.00%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 2   PAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPIT 61
           PAVPKSQKR+  A T +RTET+++GA  QRVYSTRRSVRLLEKNMES+SLG D KMEPIT
Sbjct: 159 PAVPKSQKRVAGASTRKRTETKDSGAAEQRVYSTRRSVRLLEKNMESMSLGGDEKMEPIT 218

Query: 62  VHMSFDEMPNSTGLMKEDMDLEIKSKKTDESVSKLEEDLDLEIDDPRRRK 112
           VHMSFD+MPN +  +KE+M+LE +SKKTDESVSKL+EDL +E+DD  + +
Sbjct: 219 VHMSFDDMPNISEPVKENMELETESKKTDESVSKLDEDLSVEVDDGEKNE 268

[Close]
BLAST of Lag0002015 vs. NCBI nr
Match: XP_031742149.1 (probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 0 

Query: 2   PAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPIT 61
           PAVPKSQKR+  A T +RTET+++GA  QRVYSTRRSVRLLEKNMES+SLG D KMEPIT
Sbjct: 159 PAVPKSQKRVAGASTRKRTETKDSGAAEQRVYSTRRSVRLLEKNMESMSLGGDEKMEPIT 218

Query: 62  VHMSFDEMPNSTGL----MKEDMDLEIKSKKTDESVSKLEEDLDLEIDDPRRRK 112
           VHMSFD+MPN + +    +KE+M+LE +SKKTDESVSKL+EDL +E+DD  + +
Sbjct: 219 VHMSFDDMPNISAIGAEPVKENMELETESKKTDESVSKLDEDLSVEVDDGEKNE 272

[Close]
BLAST of Lag0002015 vs. NCBI nr
Match: XP_031740824.1 (midasin-like [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 2   PAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPIT 61
           PAVPKSQKR+V A T +RTET+NNGA  QRVYSTRRSVRLLEKNMESLSL  D KMEPIT
Sbjct: 159 PAVPKSQKRVVGASTRKRTETKNNGAAEQRVYSTRRSVRLLEKNMESLSLEGDEKMEPIT 218

Query: 62  VHMSFDEMPNSTGLMKEDMDLEIKSKKTDESVSKLEEDLDLEIDDPRRRK 112
           VHM FD+MP  +  MKE+M+LE +SKKTDES SKL+E+L +E+DD  + +
Sbjct: 219 VHMPFDDMPKISEPMKENMELETESKKTDESKSKLDENLSVEVDDGEKNE 268

[Close]
BLAST of Lag0002015 vs. NCBI nr
Match: KAE8648245.1 (hypothetical protein Csa_018446, partial [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 2   PAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPIT 61
           PAVPKSQKR+V A T +RTET+NNGA  QRVYSTRRSVRLLEKNMESLSL  D KMEPIT
Sbjct: 159 PAVPKSQKRVVGASTRKRTETKNNGAAEQRVYSTRRSVRLLEKNMESLSLEGDEKMEPIT 218

Query: 62  VHMSFDEMPNSTGLMKEDMDLEIKSKKTDESVSKLEEDLDLEIDDPRRRK 112
           VHM FD+MP  +  MKE+M+LE +SKKTDES SKL+E+L +E+DD  + +
Sbjct: 219 VHMPFDDMPKISEPMKENMELETESKKTDESKSKLDENLSVEVDDGEKNE 268

[Close]
BLAST of Lag0002015 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 2   PAVPKSQKRIVVALTCRRTETRNNGAIVQRVYSTRRSVRLLEKNMESLSLGEDGKMEPIT 61
           PAVPKSQKR+V A T +RTETRNNGA  QRVYSTRRSVRLLEKNMESLSLG D +MEPI+
Sbjct: 159 PAVPKSQKRVVGASTRKRTETRNNGAAEQRVYSTRRSVRLLEKNMESLSLGGDEEMEPIS 218

Query: 62  VHMSFDEMPNSTGLMKEDMDLEIKSKKTDESVSKLEEDLDLEIDD 107
           VHMSF++MPNS+  +KE+ +LEI+SK  DES SKL+EDL +E+DD
Sbjct: 219 VHMSFEDMPNSSVPVKENTELEIESKIIDESESKLDEDLRVEVDD 263

The following BLAST results are available for this feature:
BLAST of Lag0002015 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654865.24.4e-3170.00probable serine/threonine-protein kinase kinX isoform X2 [Cucumis sativus] >KAE8... [more]
XP_031742149.13.7e-3067.54probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus][more]
XP_031740824.16.3e-3070.00midasin-like [Cucumis sativus][more]
KAE8648245.16.3e-3070.00hypothetical protein Csa_018446, partial [Cucumis sativus][more]
XP_008467303.16.3e-3073.33PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo][more]
BLAST of Lag0002015 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0002015.1Lag0002015.1mRNA