Lag0002012 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002012
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr4: 38224654 .. 38225393 (+)
RNA-Seq Expression	Lag0002012
Synteny	Lag0002012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCCCCTTCCTCCATGCTCTTCCTCTGGTTCTCCTTCCTCTACTTCACCCCTTCAATGGCGGGTCCTTACTCTCTGAAGGAGGAACCCGATTCCAAGTCCATTTACGACGTGCTTTCCGCCCACGGCCTTCCCAAGGGGATACTTCCAAAGGGTGTCAGGGATTACGATTTCGATGAGGAGAGTGGGCGGTTTGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACCAATGTTTCGGGCACTTTGAGTTACGGTCAGATCGGCGCCTTGTCTGGGATTTCGGCGCAGGATCTCTTCTTGTGGTTCCCTGTTAAGGGGATTCGCGTCGACATTCCGAGCTCTGGCGTTATTTATTTCGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTGCGGTTCAGTCCGTTCTTGCCTCTAATTCCAAGGTCTTGATCTGATTTTGATCTTTCTTCCTCTTTCAGTTTCGTTTGTTTGTTTCTTTTTGCTGGAAAGTTATTGATATGGTGTGGTTGTTTGGTTTTCTGTTTGAATTTGATTCAATTTGTTAGAGCTTGGGATGCTGGATTTGTTGTTGAAGATAAATGTCTTAATGATATGGCTGTTTTTTTTCTTCTATATGCAGAGTCAACACAGAAAGATTGGGAATCATTTTGTTCAGCCAGGTTCAGTGGAAGTGGCTTGA

mRNA sequence

ATGCTTCCCCCTTCCTCCATGCTCTTCCTCTGGTTCTCCTTCCTCTACTTCACCCCTTCAATGGCGGGTCCTTACTCTCTGAAGGAGGAACCCGATTCCAAGTCCATTTACGACGTGCTTTCCGCCCACGGCCTTCCCAAGGGGATACTTCCAAAGGGTGTCAGGGATTACGATTTCGATGAGGAGAGTGGGCGGTTTGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACCAATGTTTCGGGCACTTTGAGTTACGGTCAGATCGGCGCCTTGTCTGGGATTTCGGCGCAGGATCTCTTCTTGTGGTTCCCTGTTAAGGGGATTCGCGTCGACATTCCGAGCTCTGGCGTTATTTATTTCGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTGCGGTTCAGTCCGTTCTTGCCTCTAATTCCAAGAGTCAACACAGAAAGATTGGGAATCATTTTGTTCAGCCAGGTTCAGTGGAAGTGGCTTGA

Coding sequence (CDS)

ATGCTTCCCCCTTCCTCCATGCTCTTCCTCTGGTTCTCCTTCCTCTACTTCACCCCTTCAATGGCGGGTCCTTACTCTCTGAAGGAGGAACCCGATTCCAAGTCCATTTACGACGTGCTTTCCGCCCACGGCCTTCCCAAGGGGATACTTCCAAAGGGTGTCAGGGATTACGATTTCGATGAGGAGAGTGGGCGGTTTGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACCAATGTTTCGGGCACTTTGAGTTACGGTCAGATCGGCGCCTTGTCTGGGATTTCGGCGCAGGATCTCTTCTTGTGGTTCCCTGTTAAGGGGATTCGCGTCGACATTCCGAGCTCTGGCGTTATTTATTTCGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTGCGGTTCAGTCCGTTCTTGCCTCTAATTCCAAGAGTCAACACAGAAAGATTGGGAATCATTTTGTTCAGCCAGGTTCAGTGGAAGTGGCTTGA

Protein sequence

MLPPSSMLFLWFSFLYFTPSMAGPYSLKEEPDSKSIYDVLSAHGLPKGILPKGVRDYDFDEESGRFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVDIPSSGVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPGSVEVA

Homology

[Close]

BLAST of Lag0002012 vs. NCBI nr
Match: XP_022991665.1 (uncharacterized protein At5g01610-like [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 3.5e-78
Identity = 148/180 (82.22%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MLPPSSMLFLWFSFLYFTPSMAGPYSLKEEPDSKSIYDVLSAHGLPKGILPKGVRDYDFD 60
           MLP SSMLFLWFSFLYFT SMA PY+L +   SKSIYDVL AHGLPKG+LPKGVRDY FD
Sbjct: 1   MLPSSSMLFLWFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVRDYQFD 60

Query: 61  EESGRFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVD 120
           +++GRF+VFLD+ECNAMFENQLHYETNVSGTLSYGQIGALSGISA+DLFLWFPVKGIRVD
Sbjct: 61  QDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120

Query: 121 IPSSGVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPGSVEVA 180
           +PSSGVIYFDVGVVFKQFSQSLFETPPECV        NSK+QHRKIGN FVQP  V+VA
Sbjct: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECV-------PNSKTQHRKIGNGFVQPVQVKVA 173

[Close]

BLAST of Lag0002012 vs. NCBI nr
Match: XP_022954139.1 (uncharacterized protein At5g01610-like [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 2.9e-77
Identity = 146/179 (81.56%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MLPPSSMLFLWFSFLYFTPSMAGPYSLKEEPDSKSIYDVLSAHGLPKGILPKGVRDYDFD 60
           MLP SS+LFLWFSFLYFT SMA PY+L +   SKSIYDVL AHGLPKG+LPKGVRDY FD
Sbjct: 1   MLPSSSVLFLWFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVRDYQFD 60

Query: 61  EESGRFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVD 120
           +++GRF+VFLD+ECNAMFENQLHYETNVSGTLSYGQIGALSGISA+DLFLWFPVKGIRVD
Sbjct: 61  QDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120

Query: 121 IPSSGVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPGSVEV 180
           +PSSGVIYFDVGVVFKQFSQSLFETPPECV        NSK+QHRKIGN FVQP  V+V
Sbjct: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECV-------PNSKTQHRKIGNGFVQPVQVKV 172

[Close]

BLAST of Lag0002012 vs. NCBI nr
Match: KAG6576031.1 (hypothetical protein SDJN03_26670, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 3.6e-75
Identity = 143/179 (79.89%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MLPPSSMLFLWFSFLYFTPSMAGPYSLKEEPDSKSIYDVLSAHGLPKGILPKGVRDYDFD 60
           MLP SS+LF  FSFLYFT SMA PY+L +   SKSIYDVL AHGLPKG+LPKGVRDY FD
Sbjct: 1   MLPSSSVLFFCFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVRDYQFD 60

Query: 61  EESGRFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVD 120
           +++GRF+VFLD+ECNAMFENQLHYETNVSGTLSYGQIGALSGISA+DLFLWFPVKGIRVD
Sbjct: 61  QDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120

Query: 121 IPSSGVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPGSVEV 180
           +PSSGVIYFDVGVVFKQFSQSLFETPPECV        NSK+QHRK+GN FVQP  V+V
Sbjct: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECV-------PNSKTQHRKVGNGFVQPVQVKV 172

[Close]

BLAST of Lag0002012 vs. NCBI nr
Match: XP_022156077.1 (uncharacterized protein At5g01610-like [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 6.1e-75
Identity = 146/172 (84.88%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 7   MLFLWFSFLYFTPSMAGPYSLKEEP--DSKSIYDVLSAHGLPKGILPKGVRDYDFDEESG 66
           MLFLWF FLYFT  MA P      P  DSKSIYD+LSAHGLPKG+LP+GVRDY+ DEESG
Sbjct: 1   MLFLWFFFLYFTLPMAAPTRSYAAPKQDSKSIYDLLSAHGLPKGLLPEGVRDYEIDEESG 60

Query: 67  RFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVDIPSS 126
           RF VFLDRECNAMFENQLHY+ NVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVD+PSS
Sbjct: 61  RFQVFLDRECNAMFENQLHYDMNVSGTLSYGQIGALSGISAQDLFLWFPVKGIRVDVPSS 120

Query: 127 GVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPGS 177
           GVIYFDVGVVFKQFSQSLF+TPPECVAVQS LA+NSKSQHRKIGN FVQ GS
Sbjct: 121 GVIYFDVGVVFKQFSQSLFDTPPECVAVQS-LAANSKSQHRKIGNQFVQLGS 171

[Close]

BLAST of Lag0002012 vs. NCBI nr
Match: XP_023549341.1 (uncharacterized protein At5g01610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.8e-74
Identity = 145/184 (78.80%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MLPPSSML-----FLWFSFLYFTPSMAGPYSLKEEPDSKSIYDVLSAHGLPKGILPKGVR 60
           MLP SS+L     FLWFSFLYFT SMA PY+L +   SKSIYDVL AHGLPKG+LPKGVR
Sbjct: 1   MLPSSSVLFLWFSFLWFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVR 60

Query: 61  DYDFDEESGRFVVFLDRECNAMFENQLHYETNVSGTLSYGQIGALSGISAQDLFLWFPVK 120
           DY FD+++GRF+VFLD+ECNAMFENQLHYETNVSGTLSYGQIGALSGISA+DLFLWFPVK
Sbjct: 61  DYQFDQDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVK 120

Query: 121 GIRVDIPSSGVIYFDVGVVFKQFSQSLFETPPECVAVQSVLASNSKSQHRKIGNHFVQPG 180
            IRVD+PSSGVIYFDVGVVFKQFSQSLFETPPECV        NSK+QHRKIGN FVQP 
Sbjct: 121 EIRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECV-------PNSKTQHRKIGNGFVQPV 177

The following BLAST results are available for this feature:

BLAST of Lag0002012 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991665.1	3.5e-78	82.22	uncharacterized protein At5g01610-like [Cucurbita maxima]	[more]
XP_022954139.1	2.9e-77	81.56	uncharacterized protein At5g01610-like [Cucurbita moschata]	[more]
KAG6576031.1	3.6e-75	79.89	hypothetical protein SDJN03_26670, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022156077.1	6.1e-75	84.88	uncharacterized protein At5g01610-like [Momordica charantia]	[more]
XP_023549341.1	1.8e-74	78.80	uncharacterized protein At5g01610-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0002012 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 25..155 e-value: 1.7E-35 score: 123.7
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 8..153
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 36..144 e-value: 1.2E-31 score: 109.4
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 20..166
None	No IPR available	PANTHER	PTHR31676:SF110	OS01G0913100 PROTEIN	coord: 20..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002012.1	Lag0002012.1	mRNA