Lag0002007 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002007
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AUGMIN subunit 3 isoform X2
Location	chr4: 38164497 .. 38165847 (+)
RNA-Seq Expression	Lag0002007
Synteny	Lag0002007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTATCAGTTGTATGTTGGTAATGGCTACCATGCTAAATTTTTTGTAACTTTTTTCATTGTAAAACGTGTCCAGTTCTCAAAACAGCTTGTGACCTACTGTTTAATAAGTTTCATCTTCTATATTCCTGTCTACTTCATGCTCTTTCTTTTCATGTTTTATTAAGGGGTTCTTTCTATCTTTAATTGTAGGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCGATACTGACACCACGGGTACAAGTCTTCATCATAATAATTTCCTTCTGGGATTGCTCTTATCAATACATATTTTAGTTATCCTTGTATGAAGCTGGTTGGAATCAATAGACACCCAGATAACCTACGTTCCCTTTTTCAAAACATTAAAAAAGGTGTTCAATAATTTGAATTAAGTCTTTGCAGCCGTCTAAGTTAACCTAATCTATCAAATTGCAGTTAATTATGCCTTCAGTACTGCATCTAGTCTGTGTTTAGATCATTTTCCTTTCCAGGATTGTTTTTTTATTTTTGTTCAATGGTCCTTCATTTCTGGACATTTTATGTTTTCTAGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAGACTATCTTCTGCAGTTGAAGAGGTTACCTTGGAGCACTGCAAAAAGAATGAGGTGATCTTTAAGAAAATTATTTCCTTTTTATCTTTTTCATACCCTTTGGATTTTATTTTCCAAAAATTTTATCCATGCTGTTTGTTCAAAGTCTGCAATCTTTTCATCATGTCAATAAGATATGCCTGTTTGCTATATGAATTTCCTAATATTTATTTGTCATATGCGTTATAAAACGGTTTTGATAGCCAACTAATAACTGGCATTCATTTCCCCTATAGTCATTTTAAAGGCTTCTGGTTTGTTAGTCTGTGTTTAGTACGTGTGGATTCATGAATTGTAAAAAGTTAGTGTACAGTCTAAGTAGTGAGTTTGCAGGTAAGCATTTTTTTTTAAAAAAAAATTATTTTTAATATAACATTACAAATTACGGGATAGAGATTTGAACCTACATCCACCCAGAGAAAATAGAGATGCCTCATTGACTAAGCTTTGTTAATTTTAGCTGAAAGTTTGAACTTTTATTATACATTAATCTTCAATAGTGTAAAAACTAGAAACCTTTGGTCTGATTTACATCCTACTGTGGCCCGCAGATTGTAAAACATCACTCTCAGGAGGTTGGGCTACAACGTCGAGTTTTTGTTGATTTCTTTTGCAATCCTGAGCGTCTGAGGAATCAGGTTCGGGAACTGACTGCTCGAGTTAGAGCCTTGCAAGCTTCATAG

mRNA sequence

ATGGACTTATCAGTTGTATGTTGGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCGATACTGACACCACGGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAGACTATCTTCTGCAGTTGAAGAGGTTACCTTGGAGCACTGCAAAAAGAATGAGATTGTAAAACATCACTCTCAGGAGGTTGGGCTACAACGTCGAGTTTTTGTTGATTTCTTTTGCAATCCTGAGCGTCTGAGGAATCAGGTTCGGGAACTGACTGCTCGAGTTAGAGCCTTGCAAGCTTCATAG

Coding sequence (CDS)

ATGGACTTATCAGTTGTATGTTGGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCGATACTGACACCACGGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAGACTATCTTCTGCAGTTGAAGAGGTTACCTTGGAGCACTGCAAAAAGAATGAGATTGTAAAACATCACTCTCAGGAGGTTGGGCTACAACGTCGAGTTTTTGTTGATTTCTTTTGCAATCCTGAGCGTCTGAGGAATCAGGTTCGGGAACTGACTGCTCGAGTTAGAGCCTTGCAAGCTTCATAG

Protein sequence

MDLSVVCWCSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS

Homology

[Close]

BLAST of Lag0002007 vs. NCBI nr
Match: KAG7014555.1 (AUGMIN subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINA+LSSAVEEVTLEHCKKNEIVK
Sbjct: 517 CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVK 576

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS
Sbjct: 577 HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 616

[Close]

BLAST of Lag0002007 vs. NCBI nr
Match: XP_022991202.1 (AUGMIN subunit 3 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINA+LSSAVEEVTLEHCKKNEIVK
Sbjct: 518 CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVK 577

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS
Sbjct: 578 HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 617

[Close]

BLAST of Lag0002007 vs. NCBI nr
Match: XP_023548224.1 (AUGMIN subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINA+LSSAVEEVTLEHCKKNEIVK
Sbjct: 517 CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVK 576

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS
Sbjct: 577 HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 616

[Close]

BLAST of Lag0002007 vs. NCBI nr
Match: KAG6576034.1 (AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINA+LSSAVEEVTLEHCKKNEIVK
Sbjct: 837 CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVK 896

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS
Sbjct: 897 HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 936

[Close]

BLAST of Lag0002007 vs. NCBI nr
Match: XP_022953418.1 (AUGMIN subunit 3 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINA+LSSAVEEVTLEHCKKNEIVK
Sbjct: 517 CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVK 576

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS
Sbjct: 577 HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 616

[Close]

BLAST of Lag0002007 vs. ExPASy Swiss-Prot
Match: Q0WQE7 (AUGMIN subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AUG3 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 9   CSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINARLSSAVEEVTLEHCKKNEIVK 68
           C+ IQ+LQQLLFASSTTAQPILTP  LMKELDEM KIN++LS+AVEEVTLEH  K EIVK
Sbjct: 516 CTHIQNLQQLLFASSTTAQPILTPWPLMKELDEMGKINSKLSTAVEEVTLEHRNKREIVK 575

Query: 69  HHSQEVGLQRRVFVDFFCNPERLRNQVRELTARVRALQAS 109
           HH+++V LQRRVFVDFFCNPERLRNQVREL A VRA QAS
Sbjct: 576 HHAKDVELQRRVFVDFFCNPERLRNQVRELNALVRARQAS 615

The following BLAST results are available for this feature:

BLAST of Lag0002007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014555.1	6.8e-45	99.00	AUGMIN subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022991202.1	6.8e-45	99.00	AUGMIN subunit 3 [Cucurbita maxima]	[more]
XP_023548224.1	6.8e-45	99.00	AUGMIN subunit 3 [Cucurbita pepo subsp. pepo]	[more]
KAG6576034.1	6.8e-45	99.00	AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953418.1	6.8e-45	99.00	AUGMIN subunit 3 [Cucurbita moschata]	[more]

BLAST of Lag0002007 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQE7	2.1e-36	81.00	AUGMIN subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AUG3 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..59
None	No IPR available	PANTHER	PTHR19378:SF0	HAUS AUGMIN-LIKE COMPLEX SUBUNIT 3	coord: 9..107
IPR026206	HAUS augmin-like complex subunit 3	PANTHER	PTHR19378	GOLGIN- RELATED	coord: 9..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0002007.1	Lag0002007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0051225	spindle assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0070652	HAUS complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0072686	mitotic spindle