Lag0001989 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001989
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr4: 37949175 .. 37949794 (+)
RNA-Seq ExpressionLag0001989
SyntenyLag0001989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCTTATCGATAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCGCTGCATCAACCCGTAGATTGGAAAGAGTAACTTTTGATCATTTCCCAATCTATCTCAATTTGGGAAAAGAAAAAGGGGACCGACCCCTTTCAAGCTCAATAATGCTTGGCTCACACATCATACCTTCCTCACTGCAGTTGAATCATGGTGGAAGAACACACCCTCCCAAGGATGGCCAAGCCATGGATTCATTCAGAAACTAAAAGGCCTCAAATCGGTGCTCAAACAATGGAATCAGTCAGTCTTTGGTCAACAAAAGGAGGTTAGGTCAGGCCTTAAAACAAAGCTTACTGATCTGGACAGAAGGGAGAAACTGGGTTTATTATCTAAACAAGAAACTATTCGCAGATTTGAAATTAAAGCCCAACTTATTCTGTCTTCAGCCAATGAGGAGATTCTGTGGAGACAAAAATGCAAATTGAAATGGCTTAGTGAAGGGATGTTAATACAACATCTTTCCATAGAATCATGGCAGCCCATAGACGAAAAAGCTCTATCATGGAAGTCGTATCTGAACCAGGAATTAGCATCACATGTGATGAAGACATCGAAAAGGAGTTCATAG

mRNA sequence

ATGACCCTTATCGATAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCGCTGCATCAACCCTTGAATCATGGTGGAAGAACACACCCTCCCAAGGATGGCCAAGCCATGGATTCATTCAGAAACTAAAAGGCCTCAAATCGGTGCTCAAACAATGGAATCAGTCAGTCTTTGGTCAACAAAAGGAGGTTAGGTCAGGCCTTAAAACAAAGCTTACTGATCTGGACAGAAGGGAGAAACTGGGTTTATTATCTAAACAAGAAACTATTCGCAGATTTGAAATTAAAGCCCAACTTATTCTGTCTTCAGCCAATGAGGAGATTCTGTGGAGACAAAAATGCAAATTGAAATGGCTTAGTGAAGGGATGTTAATACAACATCTTTCCATAGAATCATGGCAGCCCATAGACGAAAAAGCTCTATCATGGAAGTCGTATCTGAACCAGGAATTAGCATCACATGTGATGAAGACATCGAAAAGGAGTTCATAG

Coding sequence (CDS)

ATGACCCTTATCGATAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCGCTGCATCAACCCTTGAATCATGGTGGAAGAACACACCCTCCCAAGGATGGCCAAGCCATGGATTCATTCAGAAACTAAAAGGCCTCAAATCGGTGCTCAAACAATGGAATCAGTCAGTCTTTGGTCAACAAAAGGAGGTTAGGTCAGGCCTTAAAACAAAGCTTACTGATCTGGACAGAAGGGAGAAACTGGGTTTATTATCTAAACAAGAAACTATTCGCAGATTTGAAATTAAAGCCCAACTTATTCTGTCTTCAGCCAATGAGGAGATTCTGTGGAGACAAAAATGCAAATTGAAATGGCTTAGTGAAGGGATGTTAATACAACATCTTTCCATAGAATCATGGCAGCCCATAGACGAAAAAGCTCTATCATGGAAGTCGTATCTGAACCAGGAATTAGCATCACATGTGATGAAGACATCGAAAAGGAGTTCATAG

Protein sequence

MTLIDRFLITDGIISKFSAASTLESWWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGLLSKQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEGMLIQHLSIESWQPIDEKALSWKSYLNQELASHVMKTSKRSS
Homology
[Close]
BLAST of Lag0001989 vs. NCBI nr
Match: RVX19336.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0 

Query: 25  SWWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGL 84
           SWW+     GW  H F++KL+ +K+ LK WN++ FG  KE +  +  ++ ++D  E+ G+
Sbjct: 755 SWWREFDGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKTILDEIANIDVIEQEGV 814

Query: 85  LSKQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEG 124
           LS   + +R E K +L      EEI WRQK K+KW+ +G
Sbjct: 815 LSSNLSAQRVERKGELEELILREEIHWRQKAKVKWVKDG 853

[Close]
BLAST of Lag0001989 vs. NCBI nr
Match: RVW63564.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-11
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 0 

Query: 26  WWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGLL 85
           WW+     GW  H F++KL+ +K+ LK WN++ FG  KE +  +  ++ ++D  E+ G L
Sbjct: 58  WWREFEGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKTILDEIANIDAIEQEGAL 117

Query: 86  SKQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEGMLIQHLSIESWQPIDEKALSWK 145
           S     +R   K +L      EEI W+QK K+KW+ EG++ Q   + S    +E  L +K
Sbjct: 118 SSDLAAQRVIRKGELEELILREEIHWKQKAKIKWVKEGIVTQSCFMNSESITEEILLYFK 177

[Close]
BLAST of Lag0001989 vs. NCBI nr
Match: RVW35045.1 (hypothetical protein CK203_079833 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-11
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 26  WWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGLL 85
           WW+    +GW  H F++KLK +KS LK+WN  VFG  +E +  + T L  +DR E+ G L
Sbjct: 15  WWQECTVEGWEGHKFMRKLKFIKSKLKEWNIMVFGDLRERKKHILTDLGRIDRIEQEGNL 74

Query: 86  S----KQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEGMLIQHLSIESWQPIDEKA 142
           +     + T+RR E++  L+     EE+ WRQK ++KW+ EG        E W P++E+A
Sbjct: 75  NLDLVSERTLRRKELEDLLL----KEEVQWRQKSRVKWIKEGNCNSKFFTE-W-PLEEEA 128

[Close]
BLAST of Lag0001989 vs. NCBI nr
Match: RVX19478.1 (hypothetical protein CK203_005375 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-11
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 0 

Query: 25  SWWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGL 84
           SWW+     GW  H F++KL+ +K+ LK WN++ FG  KE +  +  ++ ++D  E+ G 
Sbjct: 195 SWWREFEGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKTILDEIANIDANEQEGA 254

Query: 85  LSKQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEG 124
           LS    ++R   K +L      EEI WRQK K+KW+ +G
Sbjct: 255 LSSDLAVQRAVRKGELEEIILREEIHWRQKAKVKWVKDG 293

[Close]
BLAST of Lag0001989 vs. NCBI nr
Match: RVW31723.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 0 

Query: 26   WWKNTPSQGWPSHGFIQKLKGLKSVLKQWNQSVFGQQKEVRSGLKTKLTDLDRREKLGLL 85
            WW+    +GW  H F++KLK +KS LK+WN  VFG  +E +  + T L  +DR E+ G L
Sbjct: 1029 WWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNL 1088

Query: 86   S----KQETIRRFEIKAQLILSSANEEILWRQKCKLKWLSEG 124
            +     + T+RR E++  L+     EE+ WRQK ++KW+ EG
Sbjct: 1089 NLDLVSERTLRRKELEDLLL----KEEVQWRQKSRVKWIKEG 1126

The following BLAST results are available for this feature:
BLAST of Lag0001989 vs. NCBI nr
Match NameE-valueIdentityDescription
RVX19336.12.0e-1138.38putative mitochondrial protein [Vitis vinifera][more]
RVW63564.12.6e-1134.17Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW35045.12.6e-1138.33hypothetical protein CK203_079833 [Vitis vinifera][more]
RVX19478.13.3e-1137.37hypothetical protein CK203_005375 [Vitis vinifera][more]
RVW31723.14.4e-1140.20putative ribonuclease H protein [Vitis vinifera][more]
BLAST of Lag0001989 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001989.1Lag0001989.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
biological_process GO:0050789 regulation of biological process