Lag0001986 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001986
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4283 domain-containing protein
Location	chr4: 37942395 .. 37943263 (+)
RNA-Seq Expression	Lag0001986
Synteny	Lag0001986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGGCGGTGGTGGTGAAGACGGACGGCGCCGGCTGTGTTTTCTTGCGTGAAGAAGCCCTAGCCGTGGATGGAGAAGGAATCGTGAAACTGAAACAACTTATTCTATTTATCTTTTTTTTTTTTTAAATTAAATATAGCCTGCCCAGTGCACAGAGAATTGGGCTTTTATTCAGCCGGCCCAAAATTAAAAAATTTGATGTGGGCGTGTCCGGGGCGTGTCCGAAATTCAAAAAAAAAAAAAAATTTTCGGACACGCAAAATTGCGTGTCCGACACGTGTCCGGACGAATCCGTGTCCAACACAGATCCTTCGTCCATTTTGACGTGTCCGTGCTTCATAGCTTCCATGATAGCTGGTATGACATCATGAGGGCTCTACAGCAACACTTATTTGCCTTATCTTCCGTTAGCCCTATCCAACCAGACAAAGCTCTCTTAGCCTGCGAAGATGAAGAACAAGCACGAATACTAGCCAAGATCAGAGGATGGTACAAGGTGGGGAAATACTTGATTCGATTTCATCCTTGGAGCGTCGAAGCTATGTTTGGAGAACCTAAGGTCCCCTCTTATGGAGGATTTATAAAGGTCAGAAATCTACTGCTGGATAAATGGACCATTGATAGTTTCAGGAAAATAGGTGACGTATGTGGAGGATATATAGAGACCGCCAATAAGAGCCTTGCTCGCATGGATATGATGGAAATCTGTATAAAAGTTAAGGAAAACAACTCTGGTTTCATCTCGACAGAAATTCATCTCCCATCTACATCCTCCAGCCCTACGATCGTTAAAGTCGATCCCTTCTCCATGGAAGAATACAATATTGGTTACATTGTCGAAGTCCATGGCAAAATCCCACCCTAA

mRNA sequence

ATGGTGCTGGCGGTGGTGGTGAAGACGGACGGCGCCGGCTGTGTTTTCTTGCGTGAAGAAGCCCTAGCCGTGGATGGAGAAGGAATCCAACACTTATTTGCCTTATCTTCCGTTAGCCCTATCCAACCAGACAAAGCTCTCTTAGCCTGCGAAGATGAAGAACAAGCACGAATACTAGCCAAGATCAGAGGATGGTACAAGGTGGGGAAATACTTGATTCGATTTCATCCTTGGAGCGTCGAAGCTATGTTTGGAGAACCTAAGGTCCCCTCTTATGGAGGATTTATAAAGGTCAGAAATCTACTGCTGGATAAATGGACCATTGATAGTTTCAGGAAAATAGGTGACGTATGTGGAGGATATATAGAGACCGCCAATAAGAGCCTTGCTCGCATGGATATGATGGAAATCTGTATAAAAGTTAAGGAAAACAACTCTGGTTTCATCTCGACAGAAATTCATCTCCCATCTACATCCTCCAGCCCTACGATCGTTAAAGTCGATCCCTTCTCCATGGAAGAATACAATATTGGTTACATTGTCGAAGTCCATGGCAAAATCCCACCCTAA

Coding sequence (CDS)

ATGGTGCTGGCGGTGGTGGTGAAGACGGACGGCGCCGGCTGTGTTTTCTTGCGTGAAGAAGCCCTAGCCGTGGATGGAGAAGGAATCCAACACTTATTTGCCTTATCTTCCGTTAGCCCTATCCAACCAGACAAAGCTCTCTTAGCCTGCGAAGATGAAGAACAAGCACGAATACTAGCCAAGATCAGAGGATGGTACAAGGTGGGGAAATACTTGATTCGATTTCATCCTTGGAGCGTCGAAGCTATGTTTGGAGAACCTAAGGTCCCCTCTTATGGAGGATTTATAAAGGTCAGAAATCTACTGCTGGATAAATGGACCATTGATAGTTTCAGGAAAATAGGTGACGTATGTGGAGGATATATAGAGACCGCCAATAAGAGCCTTGCTCGCATGGATATGATGGAAATCTGTATAAAAGTTAAGGAAAACAACTCTGGTTTCATCTCGACAGAAATTCATCTCCCATCTACATCCTCCAGCCCTACGATCGTTAAAGTCGATCCCTTCTCCATGGAAGAATACAATATTGGTTACATTGTCGAAGTCCATGGCAAAATCCCACCCTAA

Protein sequence

MVLAVVVKTDGAGCVFLREEALAVDGEGIQHLFALSSVSPIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFIKVRNLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLPSTSSSPTIVKVDPFSMEEYNIGYIVEVHGKIPP

Homology

[Close]

BLAST of Lag0001986 vs. NCBI nr
Match: KAA0051807.1 (hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK21434.1 hypothetical protein E5676_scaffold609G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-23
Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = 0


Query: 37  SVSPIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFI 96
           S  P   DKAL+  +D EQA ++ K +GW  VG + ++F  W+ +A      VPSYGG+I
Sbjct: 164 SYKPFHADKALIFFKDIEQANLICKNKGWTTVGHFYVKFEEWNQKAHASPKVVPSYGGWI 223

Query: 97  KVRNLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLP 156
            VR L L  W ++SF +IGD CGG+IE A ++    D++E  I+VK+N S FI T I L 
Sbjct: 224 NVRGLTLHAWKLESFIQIGDACGGFIEVAKETRELTDLIEASIRVKDNYSSFIPTFIKLV 283

Query: 157 STSSSPTIVKVDPFSMEEYNIGYIVEVHG 186
                  I++V   + E++++     +HG
Sbjct: 284 DKEEQSFIIQVIVKAEEKWHMERNPSIHG 312

[Close]

BLAST of Lag0001986 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-23
Identity = 54/146 (36.99%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 40  PIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFIKVR 99
           P   DKAL+  ++EEQA ++ K +GW  VG++ ++F  W+ +A      +PSYGG+IKVR
Sbjct: 271 PFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVR 330

Query: 100 NLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLPSTS 159
            + L  W ++SF +IGD CGG+IE A ++    D++E  I++K+N SGFI   I L    
Sbjct: 331 GVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKLFDKE 390

Query: 160 SSPTIVKVDPFSMEEYNIGYIVEVHG 186
               I++V   +  ++++     +HG
Sbjct: 391 EHSFIIQVIVKTEGKWHLERSPSIHG 416

[Close]

BLAST of Lag0001986 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-23
Identity = 54/146 (36.99%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 40  PIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFIKVR 99
           P   DKAL+  ++EEQA ++ K +GW  VG++ ++F  W+ +A      +PSYGG+IKVR
Sbjct: 323 PFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVR 382

Query: 100 NLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLPSTS 159
            + L  W ++SF +IGD CGG+IE A ++    D++E  I++K+N SGFI   I L    
Sbjct: 383 GVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKLFDKE 442

Query: 160 SSPTIVKVDPFSMEEYNIGYIVEVHG 186
               I++V   +  ++++     +HG
Sbjct: 443 EHSFIIQVIVKTEGKWHLERSPSIHG 468

[Close]

BLAST of Lag0001986 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-23
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 40  PIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFIKVR 99
           P + DKAL+  ++EEQA++L K +GW  VG++ ++F  WS +       +PSYGG+IKVR
Sbjct: 217 PFRADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 100 NLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLPSTS 159
            + L  W ++SF +IGD CGG++E A ++    D+ E  IK+K+N SGFI   I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKLFDKE 336

Query: 160 SSPTIVKV 168
               IV+V
Sbjct: 337 EHSFIVQV 344

[Close]

BLAST of Lag0001986 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 7.5e-23
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 40  PIQPDKALLACEDEEQARILAKIRGWYKVGKYLIRFHPWSVEAMFGEPKVPSYGGFIKVR 99
           P   DKAL+  ++EEQA++L K +GW  VG++ ++F  WS +       +PSYGG+IKVR
Sbjct: 217 PFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVR 276

Query: 100 NLLLDKWTIDSFRKIGDVCGGYIETANKSLARMDMMEICIKVKENNSGFISTEIHLPSTS 159
            + L  W ++SF +IGD CGG++E A ++    D+ E  IK+K+N SGFI   I L    
Sbjct: 277 GVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSGFIPAYIKLFDKE 336

Query: 160 SSPTIVKV 168
               IV+V
Sbjct: 337 EHSFIVQV 344

The following BLAST results are available for this feature:

BLAST of Lag0001986 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051807.1	1.5e-23	38.93	hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK2143...	[more]
KAA0050054.1	2.6e-23	36.99	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
TYK10355.1	2.6e-23	36.99	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]
KAA0039967.1	5.7e-23	42.19	hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa]	[more]
TYK24535.1	7.5e-23	42.19	hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001986 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 63..132 e-value: 8.9E-8 score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001986.1	Lag0001986.1	mRNA