Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAATCCATCTGGAGTTCTAGAAATATTGCTTGGGCCTCGCGTGAATCAGAGGGTGCATCGGGGGTATTGTCATACTATGGAACGAATCCACCTTCACCGTGTTAGAGGTCATTGAAGGTCTTTTCTCCCTCACATACACCTTTCTCTCGCTGATGGTTACACTTTTTGGATTACAGGTATTTATGGACCAAATATCTCTCGCGACAGGAAGCTTTTTTGGCGAGAGCTTGCCGATTTGGAGGCCCTCTGCTTACCTAAATGGATCATCGGGGGTGATTTCAACATCACCCGCTGGTCATGGGAACGGTCTCCTCCTTCCTTAACCCCATCTCGTGCCTCTAGGAAATTCAATCGCTTCATTGCCACAGCCGCCTTACAAGACCTTCCCCTCTCAAACGGCAAATACACTTGGTCTAGTTTCCGGCCAAATCCATCGATGTCACTTATTGATAGGTTCTTGATCACAGACGATTTGTCTACAAAATTTGAACAACAGGGTTCGAAAGTTGGATAGAATCACATCTGACCATTTTCCGATTTGCCTCTCTCTGGGGAATGATCGCTAGGGTCCTCCTCCATTCAGATTTGTCAATGCTTGGCTATCTCATGCCTCCTTCCTTCACACTGTTGAGTCTTGGTGGAAGGCTAATCCTCTGTCTGGATGGCCGGGCCATGGATTTATTCAAAAGCTAAAAGGTCTCAAAAAGGAGCTGAAGCATTGGAATCAATAGGTTTTTGGCCAACAATCGGCTAATAGAAACAGGTTGGGGCTTGAACTAGCGAGTATTGATAAGGCAGAAGAAAGCGGTTCCATTTCCGAAACCGATATTAACAGAAGGTTACAGATAAAGGCAGAGCTGATCTCTATTGTGGCAAATGAAGAAGTTTTATGGCATCAAAGATGTAAGTTAAAATGGTTTAAGGAAGGTGATATTAACACATCTTTCTTTCACAGGCTTATGGCAATCAACAGAAGGAGGAGTACCATTACTGAAATTCTCACAACCGATGGAAATAGCCTCATAATCGACGAAGATATAGAGAAGGAATTTATTGATTTTTATCAGAAGCTCTTTGCTAAACAGAACCATAGAACCTCTCTGCCTGACATAGCGACTGGAGCCCCATTTCCCTTGAACAGCAAGCTGCTCTAG
mRNA sequence
ATGATCAAATCCATCTGGAGTTCTAGAAATATTGCTTGGGCCTCGCGTGAATCAGAGGGTGCATCGGGGGTATTGTCATACTATGGAACGAATCCACCTTCACCGTGTATTTATGGACCAAATATCTCTCGCGACAGGAAGCTTTTTTGGCGAGAGCTTGCCGATTTGGAGGCCCTCTGCTTACCTAAATGGATCATCGGGGGTGATTTCAACATCACCCGCTGGTCATGGGAACGGTCTCCTCCTTCCTTAACCCCATCTCGTGCCTCTAGGAAATTCAATCGCTTCATTGCCACAGCCGCCTTACAAGACCTTCCCCTCTCAAACGGCAAATACACTTGGTCTAGTTTCCGGCCAAATCCATCGATGTCACTTATTGATAGGTTCTTGATCACAGACGATTTGTCTACAAAATTTGAACAACAGGGTTCGAAAGGTCCTCCTCCATTCAGATTTGTCAATGCTTGGCTATCTCATGCCTCCTTCCTTCACACTGTTGAGTCTTGGTGGAAGGCTAATCCTCTGTCTGGATGGCCGGGCCATGGATTTATTCAAAAGCTAAAAGCGAGTATTGATAAGGCAGAAGAAAGCGGTTCCATTTCCGAAACCGATATTAACAGAAGGTTACAGATAAAGGCAGAGCTGATCTCTATTGTGGCAAATGAAGAAGTTTTATGGCATCAAAGATGTAAGTTAAAATGGTTTAAGGAAGGTGATATTAACACATCTTTCTTTCACAGGCTTATGGCAATCAACAGAAGGAGGAGTACCATTACTGAAATTCTCACAACCGATGGAAATAGCCTCATAATCGACGAAGATATAGAGAAGGAATTTATTGATTTTTATCAGAAGCTCTTTGCTAAACAGAACCATAGAACCTCTCTGCCTGACATAGCGACTGGAGCCCCATTTCCCTTGAACAGCAAGCTGCTCTAG
Coding sequence (CDS)
ATGATCAAATCCATCTGGAGTTCTAGAAATATTGCTTGGGCCTCGCGTGAATCAGAGGGTGCATCGGGGGTATTGTCATACTATGGAACGAATCCACCTTCACCGTGTATTTATGGACCAAATATCTCTCGCGACAGGAAGCTTTTTTGGCGAGAGCTTGCCGATTTGGAGGCCCTCTGCTTACCTAAATGGATCATCGGGGGTGATTTCAACATCACCCGCTGGTCATGGGAACGGTCTCCTCCTTCCTTAACCCCATCTCGTGCCTCTAGGAAATTCAATCGCTTCATTGCCACAGCCGCCTTACAAGACCTTCCCCTCTCAAACGGCAAATACACTTGGTCTAGTTTCCGGCCAAATCCATCGATGTCACTTATTGATAGGTTCTTGATCACAGACGATTTGTCTACAAAATTTGAACAACAGGGTTCGAAAGGTCCTCCTCCATTCAGATTTGTCAATGCTTGGCTATCTCATGCCTCCTTCCTTCACACTGTTGAGTCTTGGTGGAAGGCTAATCCTCTGTCTGGATGGCCGGGCCATGGATTTATTCAAAAGCTAAAAGCGAGTATTGATAAGGCAGAAGAAAGCGGTTCCATTTCCGAAACCGATATTAACAGAAGGTTACAGATAAAGGCAGAGCTGATCTCTATTGTGGCAAATGAAGAAGTTTTATGGCATCAAAGATGTAAGTTAAAATGGTTTAAGGAAGGTGATATTAACACATCTTTCTTTCACAGGCTTATGGCAATCAACAGAAGGAGGAGTACCATTACTGAAATTCTCACAACCGATGGAAATAGCCTCATAATCGACGAAGATATAGAGAAGGAATTTATTGATTTTTATCAGAAGCTCTTTGCTAAACAGAACCATAGAACCTCTCTGCCTGACATAGCGACTGGAGCCCCATTTCCCTTGAACAGCAAGCTGCTCTAG
Protein sequence
MIKSIWSSRNIAWASRESEGASGVLSYYGTNPPSPCIYGPNISRDRKLFWRELADLEALCLPKWIIGGDFNITRWSWERSPPSLTPSRASRKFNRFIATAALQDLPLSNGKYTWSSFRPNPSMSLIDRFLITDDLSTKFEQQGSKGPPPFRFVNAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLKASIDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFFHRLMAINRRRSTITEILTTDGNSLIIDEDIEKEFIDFYQKLFAKQNHRTSLPDIATGAPFPLNSKLL
Homology
BLAST of Lag0001979 vs. NCBI nr
Match:
XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])
HSP 1 Score: 235.7 bits (600), Expect = 5.3e-58
Identity = 137/359 (38.16%), Postives = 181/359 (50.42%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEG-ASGVLSYYGTNPPS------------------------- 60
++KS+WS+ I W++ ++ G ASG+L + N P
Sbjct: 46 IVKSLWSAHGINWSALDASGMASGILILW--NDPDLKAAEMIEGVFSLTINFCLSDGFLF 105
Query: 61 --PCIYGPNISRDRKLFWRELADLEALCLPKWIIGGDFNITRWSWERSPPSLTPSRASRK 120
IYGP+ + LFW+EL DL LC WI+ GDFN+TRWSWE+S +++
Sbjct: 106 WVSGIYGPSTTEFHYLFWQELLDLSDLCENHWILAGDFNVTRWSWEKS-NGRPLTKSMWL 165
Query: 121 FNRFIATAALQDLPLSNGKYTWSSFRPNPSMSLIDRFLITDDLSTKFEQ----------- 180
FN FI ++L D+PL+NG++TWS N S SLID FL+T+ K
Sbjct: 166 FNSFIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTS 225
Query: 181 ----------QGSKGPPPFRFVNAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLKA-- 240
Q + G PFRF N WLSH +F +E+WW PL GWPGHG + KLK+
Sbjct: 226 DHFPILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLK 285
Query: 241 --------------------------SIDKAEESGSISETDINRRLQIKAELISIVANEE 283
S+D E S ++ R+Q K +L+S+VA EE
Sbjct: 286 YAIKLWITEHFRCIHSQKEDLTNLMNSLDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEE 345
BLAST of Lag0001979 vs. NCBI nr
Match:
RVW20049.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 199.9 bits (507), Expect = 3.2e-47
Identity = 115/338 (34.02%), Postives = 166/338 (49.11%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEGASGVLSYYGTNPPSPCIYGPNISRDRKLFWRELADLEALC 60
++ S+WS RN WA+ + GASG + + +YGPN S RK FW EL+D+ L
Sbjct: 824 LVGSVWSVRNKDWAALPASGASGGILIIWDS--IKMLYGPNNSALRKDFWVELSDIAGLS 883
Query: 61 LPKWIIGGDFNITRWSWERSPPS-LTPSRASRKFNRFIATAALQDLPLSNGKYTWSSFRP 120
P+W +GGDFN+ R S E+ S LTP + F+ FI L D PL + YTWS+ +
Sbjct: 884 HPRWCVGGDFNVIRRSSEKLGGSRLTP--CMKDFDEFIRDCELIDSPLRSVSYTWSNMQE 943
Query: 121 NPSMSLIDRFLITDDLSTKFEQ--QG-------------------SKGPPPFRFVNAWLS 180
NP +DRFL +++ F Q QG GP PFRF N WL
Sbjct: 944 NPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQ 1003
Query: 181 HASFLHTVESWWKANPLSGWPGHGFIQKLK----------------------------AS 240
H+SF WW +GW GH F++KL+ A+
Sbjct: 1004 HSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVLAN 1063
Query: 241 IDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFFHRLMA 289
D E+ G +S+ + +R K EL ++ EE+ W Q+ ++KW KEGD N+ FFH++
Sbjct: 1064 FDSLEQEGGLSQELLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1123
BLAST of Lag0001979 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 199.9 bits (507), Expect = 3.2e-47
Identity = 116/364 (31.87%), Postives = 172/364 (47.25%), Query Frame = 0
Query: 5 IWSSRNIAWASRESEGASGVLSYYGTNPPS----PCIYGPNISRDRKLFWRELADLEALC 64
+W+ +N + S +GA V G+N + IYGP ++R LFW EL L+++C
Sbjct: 1 MWNDQNFSILS-VFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSIC 60
Query: 65 LPKWIIGGDFNITRWSWERSP--PSLTPSRASRKFNRFIATAALQDLPLSNGKYTWSSFR 124
LP WI+GGDFN+ RW E + P+L + R+FN FI+ L D PLSN KYTWS+ R
Sbjct: 61 LPTWILGGDFNVIRWKEETTTKNPALL---SMRRFNSFISNCNLIDPPLSNAKYTWSNLR 120
Query: 125 PNPSMSLIDRFLITDDLSTKFEQQGSK---------------------GPPPFRFVNAWL 184
++S +DRFL T F SK GP PFRF NA+L
Sbjct: 121 AQATLSRLDRFLFTSQWENIFPGHTSKVLTRTTSDHFPIVLESSTISWGPSPFRFTNAYL 180
Query: 185 SHASFLHTVESWWKANPLSGWPGHGFIQKLKA---------------------------- 244
+ +E WW G+ G+ F+++LK
Sbjct: 181 KDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEID 240
Query: 245 SIDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFFHRLM 304
IDK E GS +E +R +KA+L I E +W Q+CK W EGD N+SFFH++
Sbjct: 241 QIDKLEAEGSATEIHREKRTALKADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKIC 300
Query: 305 AINRRRSTITEILTTDGNSLIIDEDIEKEFIDFYQKLFAKQNHRTSLPDIATGAPFP-LN 313
+++ I++I+ G + + D DI FI ++ ++ + + P +N
Sbjct: 301 TARQKKCLISKIINNSGQNCLNDSDIADAFIQHFEDIYTDNRNSQLFIENLDWCPISNIN 360
BLAST of Lag0001979 vs. NCBI nr
Match:
RVW12714.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 198.4 bits (503), Expect = 9.4e-47
Identity = 115/343 (33.53%), Postives = 167/343 (48.69%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEGAS-GVLSYYGT----NPPSPCIYGPNISRDRKLFWRELAD 60
++ S+WS RN WA+ + GAS G+L + + +YGPN S RK FW EL+D
Sbjct: 748 LVGSVWSVRNKDWAALPASGASGGILIIWDSKKLRREEVVLVYGPNNSALRKDFWVELSD 807
Query: 61 LEALCLPKWIIGGDFNITRWSWERSPPS-LTPSRASRKFNRFIATAALQDLPLSNGKYTW 120
+ L P+W +GGDFN+ R S E+ S LTP + F+ FI L D PL + YTW
Sbjct: 808 IAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTP--RMKDFDEFIRDCELIDSPLRSASYTW 867
Query: 121 SSFRPNPSMSLIDRFLITDDLSTKFEQ--QG-------------------SKGPPPFRFV 180
S+ + NP +DRFL +++ F Q QG GP PFRF
Sbjct: 868 SNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFRFE 927
Query: 181 NAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLK------------------------- 240
N WL H++F WW +GW GH F++KL+
Sbjct: 928 NMWLQHSNFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDIL 987
Query: 241 ---ASIDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFF 289
A+ D E+ G +S + +R K EL ++ EE+ W Q+ ++KW KEGD N+ FF
Sbjct: 988 AVLANFDSLEQEGGLSHERLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFF 1047
BLAST of Lag0001979 vs. NCBI nr
Match:
KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 198.0 bits (502), Expect = 1.2e-46
Identity = 110/311 (35.37%), Postives = 152/311 (48.87%), Query Frame = 0
Query: 37 IYGPNISRDRKLFWRELADLEALCLPKWIIGGDFNITRWSWERSPPSLTPSRASRKFNRF 96
+YGP + DR W EL L+ LC+P W+I GDFNI RW ER+ SL R FN F
Sbjct: 670 VYGPYKNNDRTNLWLELELLQTLCVPNWLIIGDFNIVRWKTERNAKSL-DRRNMANFNNF 729
Query: 97 IATAALQDLPLSNGKYTWSSFRPNPSMSLIDRFLITDDLSTKFEQQGSK----------- 156
I+ L D P N KYTWS+ R NP+ S +DRFL++ F S+
Sbjct: 730 ISVNELIDPPPLNNKYTWSNLRLNPTYSCLDRFLLSKGWENTFGLHTSRTMERIVSDHFP 789
Query: 157 ----------GPPPFRFVNAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLKA------ 216
GP PFR N+ L F WW + G+PG+ FIQ LK+
Sbjct: 790 IILESPQIKWGPCPFRLNNSSLKDKEFQKNFPDWWNNSKQFGFPGYAFIQSLKSLSKLIK 849
Query: 217 ----------------------SIDKAEESGSISETDINRRLQIKAELISIVANEEVLWH 276
SIDK E G++S +R+ +K+EL+SI N+ ++WH
Sbjct: 850 EWQHNKVNLYDAKRKVLLEEIDSIDKLELQGNMSTIHHQKRISLKSELLSIENNQALIWH 909
Query: 277 QRCKLKWFKEGDINTSFFHRLMAINRRRSTITEILTTDGNSLIIDEDIEKEFIDFYQKLF 299
QR + +W GD N +FFHR+ IN+R++ I I +G SL DI + FI +Q ++
Sbjct: 910 QRSRQRWNLLGDENNAFFHRVCTINQRKNQIKSICDPNGTSLDSIGDISRIFISHFQNIY 969
BLAST of Lag0001979 vs. ExPASy TrEMBL
Match:
A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 137/359 (38.16%), Postives = 181/359 (50.42%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEG-ASGVLSYYGTNPPS------------------------- 60
++KS+WS+ I W++ ++ G ASG+L + N P
Sbjct: 46 IVKSLWSAHGINWSALDASGMASGILILW--NDPDLKAAEMIEGVFSLTINFCLSDGFLF 105
Query: 61 --PCIYGPNISRDRKLFWRELADLEALCLPKWIIGGDFNITRWSWERSPPSLTPSRASRK 120
IYGP+ + LFW+EL DL LC WI+ GDFN+TRWSWE+S +++
Sbjct: 106 WVSGIYGPSTTEFHYLFWQELLDLSDLCENHWILAGDFNVTRWSWEKS-NGRPLTKSMWL 165
Query: 121 FNRFIATAALQDLPLSNGKYTWSSFRPNPSMSLIDRFLITDDLSTKFEQ----------- 180
FN FI ++L D+PL+NG++TWS N S SLID FL+T+ K
Sbjct: 166 FNSFIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTS 225
Query: 181 ----------QGSKGPPPFRFVNAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLKA-- 240
Q + G PFRF N WLSH +F +E+WW PL GWPGHG + KLK+
Sbjct: 226 DHFPILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLK 285
Query: 241 --------------------------SIDKAEESGSISETDINRRLQIKAELISIVANEE 283
S+D E S ++ R+Q K +L+S+VA EE
Sbjct: 286 YAIKLWITEHFRCIHSQKEDLTNLMNSLDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEE 345
BLAST of Lag0001979 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 116/364 (31.87%), Postives = 172/364 (47.25%), Query Frame = 0
Query: 5 IWSSRNIAWASRESEGASGVLSYYGTNPPS----PCIYGPNISRDRKLFWRELADLEALC 64
+W+ +N + S +GA V G+N + IYGP ++R LFW EL L+++C
Sbjct: 1 MWNDQNFSILS-VFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSIC 60
Query: 65 LPKWIIGGDFNITRWSWERSP--PSLTPSRASRKFNRFIATAALQDLPLSNGKYTWSSFR 124
LP WI+GGDFN+ RW E + P+L + R+FN FI+ L D PLSN KYTWS+ R
Sbjct: 61 LPTWILGGDFNVIRWKEETTTKNPALL---SMRRFNSFISNCNLIDPPLSNAKYTWSNLR 120
Query: 125 PNPSMSLIDRFLITDDLSTKFEQQGSK---------------------GPPPFRFVNAWL 184
++S +DRFL T F SK GP PFRF NA+L
Sbjct: 121 AQATLSRLDRFLFTSQWENIFPGHTSKVLTRTTSDHFPIVLESSTISWGPSPFRFTNAYL 180
Query: 185 SHASFLHTVESWWKANPLSGWPGHGFIQKLKA---------------------------- 244
+ +E WW G+ G+ F+++LK
Sbjct: 181 KDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEID 240
Query: 245 SIDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFFHRLM 304
IDK E GS +E +R +KA+L I E +W Q+CK W EGD N+SFFH++
Sbjct: 241 QIDKLEAEGSATEIHREKRTALKADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKIC 300
Query: 305 AINRRRSTITEILTTDGNSLIIDEDIEKEFIDFYQKLFAKQNHRTSLPDIATGAPFP-LN 313
+++ I++I+ G + + D DI FI ++ ++ + + P +N
Sbjct: 301 TARQKKCLISKIINNSGQNCLNDSDIADAFIQHFEDIYTDNRNSQLFIENLDWCPISNIN 360
BLAST of Lag0001979 vs. ExPASy TrEMBL
Match:
A0A438CA35 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_201 PE=4 SV=1)
HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 115/338 (34.02%), Postives = 166/338 (49.11%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEGASGVLSYYGTNPPSPCIYGPNISRDRKLFWRELADLEALC 60
++ S+WS RN WA+ + GASG + + +YGPN S RK FW EL+D+ L
Sbjct: 824 LVGSVWSVRNKDWAALPASGASGGILIIWDS--IKMLYGPNNSALRKDFWVELSDIAGLS 883
Query: 61 LPKWIIGGDFNITRWSWERSPPS-LTPSRASRKFNRFIATAALQDLPLSNGKYTWSSFRP 120
P+W +GGDFN+ R S E+ S LTP + F+ FI L D PL + YTWS+ +
Sbjct: 884 HPRWCVGGDFNVIRRSSEKLGGSRLTP--CMKDFDEFIRDCELIDSPLRSVSYTWSNMQE 943
Query: 121 NPSMSLIDRFLITDDLSTKFEQ--QG-------------------SKGPPPFRFVNAWLS 180
NP +DRFL +++ F Q QG GP PFRF N WL
Sbjct: 944 NPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQ 1003
Query: 181 HASFLHTVESWWKANPLSGWPGHGFIQKLK----------------------------AS 240
H+SF WW +GW GH F++KL+ A+
Sbjct: 1004 HSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVLAN 1063
Query: 241 IDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFFHRLMA 289
D E+ G +S+ + +R K EL ++ EE+ W Q+ ++KW KEGD N+ FFH++
Sbjct: 1064 FDSLEQEGGLSQELLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVAN 1123
BLAST of Lag0001979 vs. ExPASy TrEMBL
Match:
A0A438BP29 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_691 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 4.5e-47
Identity = 115/343 (33.53%), Postives = 167/343 (48.69%), Query Frame = 0
Query: 1 MIKSIWSSRNIAWASRESEGAS-GVLSYYGT----NPPSPCIYGPNISRDRKLFWRELAD 60
++ S+WS RN WA+ + GAS G+L + + +YGPN S RK FW EL+D
Sbjct: 748 LVGSVWSVRNKDWAALPASGASGGILIIWDSKKLRREEVVLVYGPNNSALRKDFWVELSD 807
Query: 61 LEALCLPKWIIGGDFNITRWSWERSPPS-LTPSRASRKFNRFIATAALQDLPLSNGKYTW 120
+ L P+W +GGDFN+ R S E+ S LTP + F+ FI L D PL + YTW
Sbjct: 808 IAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTP--RMKDFDEFIRDCELIDSPLRSASYTW 867
Query: 121 SSFRPNPSMSLIDRFLITDDLSTKFEQ--QG-------------------SKGPPPFRFV 180
S+ + NP +DRFL +++ F Q QG GP PFRF
Sbjct: 868 SNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFRFE 927
Query: 181 NAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLK------------------------- 240
N WL H++F WW +GW GH F++KL+
Sbjct: 928 NMWLQHSNFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDIL 987
Query: 241 ---ASIDKAEESGSISETDINRRLQIKAELISIVANEEVLWHQRCKLKWFKEGDINTSFF 289
A+ D E+ G +S + +R K EL ++ EE+ W Q+ ++KW KEGD N+ FF
Sbjct: 988 AVLANFDSLEQEGGLSHERLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFF 1047
BLAST of Lag0001979 vs. ExPASy TrEMBL
Match:
A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 5.9e-47
Identity = 110/311 (35.37%), Postives = 152/311 (48.87%), Query Frame = 0
Query: 37 IYGPNISRDRKLFWRELADLEALCLPKWIIGGDFNITRWSWERSPPSLTPSRASRKFNRF 96
+YGP + DR W EL L+ LC+P W+I GDFNI RW ER+ SL R FN F
Sbjct: 670 VYGPYKNNDRTNLWLELELLQTLCVPNWLIIGDFNIVRWKTERNAKSL-DRRNMANFNNF 729
Query: 97 IATAALQDLPLSNGKYTWSSFRPNPSMSLIDRFLITDDLSTKFEQQGSK----------- 156
I+ L D P N KYTWS+ R NP+ S +DRFL++ F S+
Sbjct: 730 ISVNELIDPPPLNNKYTWSNLRLNPTYSCLDRFLLSKGWENTFGLHTSRTMERIVSDHFP 789
Query: 157 ----------GPPPFRFVNAWLSHASFLHTVESWWKANPLSGWPGHGFIQKLKA------ 216
GP PFR N+ L F WW + G+PG+ FIQ LK+
Sbjct: 790 IILESPQIKWGPCPFRLNNSSLKDKEFQKNFPDWWNNSKQFGFPGYAFIQSLKSLSKLIK 849
Query: 217 ----------------------SIDKAEESGSISETDINRRLQIKAELISIVANEEVLWH 276
SIDK E G++S +R+ +K+EL+SI N+ ++WH
Sbjct: 850 EWQHNKVNLYDAKRKVLLEEIDSIDKLELQGNMSTIHHQKRISLKSELLSIENNQALIWH 909
Query: 277 QRCKLKWFKEGDINTSFFHRLMAINRRRSTITEILTTDGNSLIIDEDIEKEFIDFYQKLF 299
QR + +W GD N +FFHR+ IN+R++ I I +G SL DI + FI +Q ++
Sbjct: 910 QRSRQRWNLLGDENNAFFHRVCTINQRKNQIKSICDPNGTSLDSIGDISRIFISHFQNIY 969
BLAST of Lag0001979 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 56.6 bits (135), Expect = 4.1e-08
Identity = 56/257 (21.79%), Postives = 99/257 (38.52%), Query Frame = 0
Query: 86 PSRASRKFNRFIATAALQDLPLSNGKYTWSSFR-PNPSMSLIDRFLITDDLSTK------ 145
P R +F + + L D+P YTWS+ + NP + +DR + D +
Sbjct: 245 PMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIA 304
Query: 146 -FEQQGSKGPPP---------------FRFVNAWLSHASFLHTVESWW------------ 205
FE G P FR+ + +H +FL ++ W
Sbjct: 305 VFELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFS 364
Query: 206 ---------KANPLSGWPGHGFIQ-KLKASIDKAEESGSISETDINRRLQIKAELIS--- 265
K L G G IQ K K ++D E S T+ + L + E ++
Sbjct: 365 LGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSL-FRVEHVARKK 424
Query: 266 ---IVANEEVLWHQRCKLKWFKEGDINTSFFHRLMAINRRRSTITEILTTDGNSLIIDED 292
A E + Q+ ++KW ++GD NT FFH+++ N+ ++ I + D +
Sbjct: 425 WNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQ 484
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022158956.1 | 5.3e-58 | 38.16 | uncharacterized protein LOC111025405 [Momordica charantia] | [more] |
| RVW20049.1 | 3.2e-47 | 34.02 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| KAA0039950.1 | 3.2e-47 | 31.87 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
| RVW12714.1 | 9.4e-47 | 33.53 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| KAA0035247.1 | 1.2e-46 | 35.37 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E2G6 | 2.6e-58 | 38.16 | uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A5A7T9I7 | 1.6e-47 | 31.87 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A438CA35 | 1.6e-47 | 34.02 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
| A0A438BP29 | 4.5e-47 | 33.53 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
| A0A5D3DFM9 | 5.9e-47 | 35.37 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G43760.1 | 4.1e-08 | 21.79 | DNAse I-like superfamily protein | [more] |
