Lag0001944 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001944
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	selenoprotein F-like
Location	chr4: 37371490 .. 37375656 (-)
RNA-Seq Expression	Lag0001944
Synteny	Lag0001944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTTCTCAGAGGTGTAAAGAAGCCGGCCACGGCGGTGACGCTGGCGGCAGCGGCAGCGGCGATAATTTTCATAGCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCCCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGTTTGATTCACGGCTCGCACGGTTTTTCTATACTCATTCTTCATTTGGATTTGAATTTGAATTTCTAGCTCTATTACTGCATTTCTTCCCTTTTCCGCTGCTATTTCTCATCGATTTTATTCCTTTTTCCCCCCTCAATTCTCCGCGTTTGTTTTTGTTTTTGAACGATTGATTGTTCGCCTTGTGGTCGATTTCGGTTATGGATTTTTTTTTTTCCTTTCTTTTTTCCCTTGATTTGGATTTTGGATTTCCGGATTACTTTGTTGTAGTCTGATGTGTAAGTGTTGGTGTTAATTTCGATATCTTCAATCAATTTCTTAGTGATTGTGAATAGAGTTTTCTGATGTTAGTTCTTATTTTGTTCGAAAATGCGGTAGTGTGGAGTTGAGAGACCTTTACCTAGTACCTAATTCTGTGATTGCCTGGTAATTTGTTAGGGAAGAGGATGGTTCCTGAAATTCTGATGTGATGATTCAACTTTTGTACAAAAGTTTTCAATAGATTATAGGGTTTGCAGAGATCAGATTAGTGGAAGAAAAAAGTCTTCAACTTTTTAAAATGACTTGTTGATTATATCTTTCATAAATCACGTATCATGTCTTTCTGAGATTTGAATGCAATTTGTGATTGTTAGTGCTAGTCCTTTTGGTGAATAAGTTTATTTTTAACTCTGGCAATGACTTTAAAAAAAAAAAAAAATCTGGCAATGGCTTCTTATCTCCATCCCCACTGACCATATAATCTTTTCATTGATTGAAACTTTCTGTGTGGAAAAGGAAACATCCCTGTTTGATTGCCAAGCCCCTGCATAGTTTTAGAGGGCAAAGATCTAAGGGGGGTTTTTTGGAACTATTTTGAGAAAAAAAAGGTTTATATTTTAGCGCAAATGTTTTGTGTAAACATCATCAAATGTTTTTAAAAAGTTGTACAGTTGTTTTTTTGTTATGTTTTTACATATCTCTATTTTTTTTAGTTAAATTGAAGATGTTCTTTCTTCCAAAATCATGTACTTCTGAGTATTGATTCCAAGTGCACAATAATGTTAATTGTTACAAGTCATCTGATTGCAACTCGTAAAGAATAGGAAGCTGTTTTTTTAGACCGTGTCTTCTAAGTAGCCATATTTTCTAAACGTAAAAATGCATAGACTGTTGGTTGGAGAAATCATTTTCTAATAAAGGCACTCTATAATCATACGCCCCACCTCTTCTCCCAATTACAGTTCTTTAAAATAGTTTTACAAACAACTGTAGTAACCTGTTTTTCAAAGTAGAATCTGAACAGCAGTTTTTGGCTACAAGAAAATGCTAAGGCAGTTGGCTGGAAAAATCTTTTTGCATGCATCAAACTAGTTTTATCAATTGAACAATATTCTTTTAAAAGCACCTCCCAGAATTCCCCCCAAACCCCCTGTTCCGTGAGCTTCAACCATTTATGCAACTGCTTTTGGAAACAAGAGATAGGTTGCGAGATGGTGAGTTAATATAACCTATTGCCTTTTAAAATCATAGTTAAAGAATGTGCAAGTTTCTAAAATAGTTCTGCAAAAAAACATGGTAAAAAATGTTATATTACAAAATGATGATTACAGTGATTGTTGCCCTGGCAACTGCAACACTGGATCTATGAAGGCAACATAATGACTCCAAATAGTCTTTATCATATTCAACTGATAGTATGCAGAATCTGCAATCATCTCGTGTCGGCTTCTGTAATAGTTTTGAAGTGCATTGTTTTTAATATTACACGTTGTCCTCAATGTCCAAATTTGTATTGCAGAATTAGTGTCAGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATGTTATAAATGTTCTAATTTCTGGAGGCTGGATTTCATCAACTTAACTACTATTCCATTTCTGGATTGTGTATCATGCTTCTAAACCGAATGCTTGTGCATCCATGTGGTAGACATGCCTCATTCAAACACAGTGGTTACTACGTCTGAACTTTTATGACTTTCTTACATGTTACACGATCGGGAGGTGCCATTTCGCAAGATTAACAATTTATGCATGTACGTAATTATCACAACTATGGTCCGAAAACACCATCATGAATTAGCCTAGTGGTCAATAAGGACCATGGAAAAAATAAAGGGTTTAAAGTGAATGAGTTTAATCCATGATGGTCACCTACCTAGGAATAGGATTTAATATCCTACGTGTTTCCTGACAACCAAATGTAGTAGGGTCAGACGGTTGTCCCGTGAGATTATTCGAGGTGCGTGTTAGCTGGTTCGGACACTCACAGATAAAAATTTTAAAAAAGGGATCCGAAATAAGGTCTCAGTAAACAAGGGGACTAACTCTTCCGTAGAAAAAGGTGATTCAAGGGATGTGCAATGCATTTATCTAGAAATACTTGGCTTCTCGATGAACTTCTTTTGTAAATTTATTTTAATATTCTTATATCAGTGTTTCAAACTTCTTTACAGATATTCCTCACATTACTTTTTCACAAGAGCCTAGTAGTTTCCCTTTTCCATCTCATCGGAAGGAAAGCCTTTCTTTTTGTTCCACTTAGCCCTATACCTCTACAATGCTATAGTGATAGGTTCGATTGGAACAAGACAATTCTATTCGGTCAAATACCTAGCATCAAACTACCACCTCCCTTTAATTTCAGTATCTCTAAACAAATTCCTGGTTCCAAAAGTTTTGTCCATCATGGTAATAGTTCGACAGAAGTGGCTGATATACATCCAGATTGAGTTTTGAGTTCCAACCCTCCCCCCAATTCAGTACTCTGTTGTTGGTTGTATTTTATAACTAGATATGCATTTGTCTGTCTTTTCATTTATTTGGACAAAGGATGAAAACCAATTAACTAAGTTTTTTTCATTTATTTGGACAAGGGATGAAAGCCAATTAACTAAGTTTGTTAACTGCAGATAACTTATTCTGGTGCTGTGCTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATCGAAGAAGAAAAGGATCAATTCCCTTCGGTTAAGGTCCAATATATCTTCAACTCTCCGCCGAAGCTGGTTATGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGTAACTTCTAAATGGCCAAAAACTTCTCACTGTAGTGGTGGAGAGACCCTATTTAGATCGTAAATATTGATGTTTTCTTCTTTCTGAGAACCAATAAACAAAAGAATACAAAAGGAAAAGCTTAAACAAAAAACTGAAACTAGAGTCTCAAAGAAGAGCTCTAACCATTAAAAATAAGAGAAAAGAGATGGTTACAACATACTTTTGGATTAGACACCCAAGGAGGGACGTTAAATCTAGCCGAAAGTCGCATCTGCATCTAGGGAAAGTTTATTCAATTAGACTGCTATAATGCAGCAACCTCTTAACCACCGTTGGATGTGAATTCAAAAATTGCAAGTCTCTCAGTAATCACTAGATACAAATTCTTGCAGTACTTTTGTAGTTTCTTTTTCATACATTCAACGCTGCAAAACTATTGGTCACAATGTAGCAGCCTCGTTGAATAATTTCTTCCCTCCAAGATGGTTCCAATCTATTCCCCTAAAAGTTGTCTTATTTCTATTGTAAATGTTGATGTTTGCTCAACCAAATGGCTTTTTTATATTTGTCTAGAAGAAAGCTTACATCCGTAACATAGTCAAGAGTTCGTTCAATATCTCAAAGCAAGATATCTTGAGGTTAAGAAAGTCTGAAAGTGTATAGATTTTGCTTTAGCTTTGTGGGTAATGACCATTGATAATTGATACTCACATAACGTGACAGAAAATTCAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGGATTGACAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

mRNA sequence

ATGCAGTTTCTCAGAGGTGTAAAGAAGCCGGCCACGGCGGTGACGCTGGCGGCAGCGGCAGCGGCGATAATTTTCATAGCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCCCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGTCAGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTGCTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATCGAAGAAGAAAAGGATCAATTCCCTTCGGTTAAGGTCCAATATATCTTCAACTCTCCGCCGAAGCTGGTTATGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGACAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Coding sequence (CDS)

ATGCAGTTTCTCAGAGGTGTAAAGAAGCCGGCCACGGCGGTGACGCTGGCGGCAGCGGCAGCGGCGATAATTTTCATAGCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCCCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGTCAGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTGCTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATCGAAGAAGAAAAGGATCAATTCCCTTCGGTTAAGGTCCAATATATCTTCAACTCTCCGCCGAAGCTGGTTATGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGACAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Protein sequence

MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFPSVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

Homology

[Close]

BLAST of Lag0001944 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 6.2e-85
Identity = 158/171 (92.40%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ L GV+ PATAVT+A AA  +IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQYIFNSPPKL++LDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of Lag0001944 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 5.8e-83
Identity = 156/171 (91.23%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ L GV  PATAVT+  AAAAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKL++LDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Lag0001944 vs. NCBI nr
Match: XP_023004122.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 6.4e-82
Identity = 155/171 (90.64%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ    VKKPAT V +AA  AAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQYIFNSPPKL +LDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Lag0001944 vs. NCBI nr
Match: XP_022960129.1 (selenoprotein F-like [Cucurbita moschata])

HSP 1 Score: 314.3 bits (804), Expect = 6.4e-82
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ    VKKPAT V +AA AAAIIF+ASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVK+QYIFNSPPKL +LDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Lag0001944 vs. NCBI nr
Match: KAG6592972.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MQFLRGVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ    VK+PAT V +AA AAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91

Query: 61  AEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151

Query: 121 SVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVK+QYIFNSPPKL +LDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202

[Close]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-19
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEEKDQ-FPSVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K + F  ++++Y+  S P L +LDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 95.1 bits (235), Expect = 8.0e-19
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 97  VCMRKLVFYPEIVGFIEEEKDQ-FPSVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K + F  ++++Y+  S P L +LDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

[Close]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEEEKDQ-FPSVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K + F  ++++Y+  S P L +LDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 48/132 (36.36%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCSEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEEKDQ-FPSVKVQYIFNSPPKLVMLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K + F  ++++Y+  S P L +LDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLQR 161

[Close]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 9.8e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 0


Query: 6   GVKKPATAVTLAAAAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIK 65
           G  +PA  + L  A A   F A   L     + SS  C +LGF+   LCS C  L ++  
Sbjct: 7   GWLRPALGLRLLLATA---FQAVSALG---AEFSSEACRELGFSSNLLCSSCDLLGQF-N 66

Query: 66  DQELVSDCLKCCSEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVKV 125
              L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  +++
Sbjct: 67  LLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQI 126

Query: 126 QYIFNSPPKLVMLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
           +Y+  S P L +LDD G   E + I  W  + + +FL EK++R
Sbjct: 127 KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

The following BLAST results are available for this feature:

BLAST of Lag0001944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875398.1	6.2e-85	92.40	selenoprotein F [Benincasa hispida]	[more]
XP_008460012.1	5.8e-83	91.23	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
XP_023004122.1	6.4e-82	90.64	selenoprotein F-like [Cucurbita maxima]	[more]
XP_022960129.1	6.4e-82	90.06	selenoprotein F-like [Cucurbita moschata]	[more]
KAG6592972.1	1.1e-81	90.06	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0001944 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8YXY3	4.7e-19	36.36	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	8.0e-19	36.36	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	1.8e-18	36.36	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
A1Z623	1.8e-18	36.36	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q923V8	9.8e-17	34.36	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 1.1E-28 score: 99.1
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 92..165 e-value: 7.3E-27 score: 95.4
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 32..169
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 32..169
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 76..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001944.1	Lag0001944.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity