Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTCTCAAGGGAGTAGGGAAAGCTGGGACTAACATTTTGGGGGGCGTTACAAAAGGAGTAGGCCAGGCGGTGGAAACAGCCGGGGATGTGGCTGAGAAGGCGCCGGTCGTCGGCGGCATAGGCACTGTCGTGGAGGGTGCCGGAGAGGCGATCGAAAAGGCGGGCGAGGCGACGAAGGATTTCGGTGAGAAAGCGTTTGAAAATAAAGAAAATAAACCCAAAAAAGGTCTGAAAGAAGTTATACTCCACCAAATGGAAGAAGATGGAGATGATGATGTAAATGAATATGACAAAGAAGAAAGGCAAAAGCGCATGGATGATTTGAAGAAGTTATTAGACGCTGAAAAGGCGCGACAGGAGGGACGCGACGACGACGAATTGACCCAGCGTCTTAAAGATAGGATGTCTACAGTATTATCAACCTATGAGTCCCCCTTCAAATCTTAG
ATGAATCTTCTCAAGGGAGTAGGGAAAGCTGGGACTAACATTTTGGGGGGCGTTACAAAAGGAGTAGGCCAGGCGGTGGAAACAGCCGGGGATGTGGCTGAGAAGGCGCCGGTCGTCGGCGGCATAGGCACTGTCGTGGAGGGTGCCGGAGAGGCGATCGAAAAGGCGGGCGAGGCGACGAAGGATTTCGGTGAGAAAGCGTTTGAAAATAAAGAAAATAAACCCAAAAAAGGTCTGAAAGAAGTTATACTCCACCAAATGGAAGAAGATGGAGATGATGATGTAAATGAATATGACAAAGAAGAAAGGCAAAAGCGCATGGATGATTTGAAGAAGTTATTAGACGCTGAAAAGGCGCGACAGGAGGGACGCGACGACGACGAATTGACCCAGCGTCTTAAAGATAGGATGTCTACAGTATTATCAACCTATGAGTCCCCCTTCAAATCTTAG
ATGAATCTTCTCAAGGGAGTAGGGAAAGCTGGGACTAACATTTTGGGGGGCGTTACAAAAGGAGTAGGCCAGGCGGTGGAAACAGCCGGGGATGTGGCTGAGAAGGCGCCGGTCGTCGGCGGCATAGGCACTGTCGTGGAGGGTGCCGGAGAGGCGATCGAAAAGGCGGGCGAGGCGACGAAGGATTTCGGTGAGAAAGCGTTTGAAAATAAAGAAAATAAACCCAAAAAAGGTCTGAAAGAAGTTATACTCCACCAAATGGAAGAAGATGGAGATGATGATGTAAATGAATATGACAAAGAAGAAAGGCAAAAGCGCATGGATGATTTGAAGAAGTTATTAGACGCTGAAAAGGCGCGACAGGAGGGACGCGACGACGACGAATTGACCCAGCGTCTTAAAGATAGGATGTCTACAGTATTATCAACCTATGAGTCCCCCTTCAAATCTTAG
MNLLKGVGKAGTNILGGVTKGVGQAVETAGDVAEKAPVVGGIGTVVEGAGEAIEKAGEATKDFGEKAFENKENKPKKGLKEVILHQMEEDGDDDVNEYDKEERQKRMDDLKKLLDAEKARQEGRDDDELTQRLKDRMSTVLSTYESPFKS
Homology
BLAST of Lag0001936 vs. NCBI nr
Match:
XP_004140683.2 (uncharacterized protein LOC101212952 [Cucumis sativus])
HSP 1 Score: 118.2 bits (295), Expect = 5.9e-23
Identity = 75/147 (51.02%), Postives = 100/147 (68.03%), Query Frame = 0
BLAST of Lag0001936 vs. NCBI nr
Match:
XP_008460195.1 (PREDICTED: uncharacterized protein LOC103499080 [Cucumis melo])
HSP 1 Score: 113.2 bits (282), Expect = 1.9e-21
Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 0
BLAST of Lag0001936 vs. NCBI nr
Match:
KAA0039924.1 (uncharacterized protein E6C27_scaffold122G002040 [Cucumis melo var. makuwa] >TYK24576.1 uncharacterized protein E5676_scaffold266G001210 [Cucumis melo var. makuwa])
HSP 1 Score: 113.2 bits (282), Expect = 1.9e-21
Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 0
BLAST of Lag0001936 vs. NCBI nr
Match:
XP_022991799.1 (uncharacterized protein LOC111488338 [Cucurbita maxima])
HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 0
BLAST of Lag0001936 vs. NCBI nr
Match:
KAG6575375.1 (hypothetical protein SDJN03_26014, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 111.3 bits (277), Expect = 7.3e-21
Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_004140683.2 5.9e-23 51.02 uncharacterized protein LOC101212952 [Cucumis sativus] [more] XP_008460195.1 1.9e-21 49.66 PREDICTED: uncharacterized protein LOC103499080 [Cucumis melo] [more] KAA0039924.1 1.9e-21 49.66 uncharacterized protein E6C27_scaffold122G002040 [Cucumis melo var. makuwa] >TYK... [more] XP_022991799.1 4.3e-21 47.30 uncharacterized protein LOC111488338 [Cucurbita maxima] [more] KAG6575375.1 7.3e-21 45.27 hypothetical protein SDJN03_26014, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G A A T C T T C T C A A G G G A G T A G G G A A A G C T G G G A C T A A C A T T T T G G G G G G C G T T A C A A A A G G A G T A G G C C A G G C G G T G G A A A C A G C C G G G G A T G T G G C T G A G A A G G C G C C G G T C G T C G G C G G C A T A G G C A C T G T C G T G G A G G G T G C C G G A G A G G C G A T C G A A A A G G C G G G C G A G G C G A C G A A G G A T T T C G G T G A G A A A G C G T T T G A A A A T A A A G A A A A T A A A C C C A A A A A A G G T C T G A A A G A A G T T A T A C T C C A C C A A A T G G A A G A A G A T G G A G A T G A T G A T G T A A A T G A A T A T G A C A A A G A A G A A A G G C A A A A G C G C A T G G A T G A T T T G A A G A A G T T A T T A G A C G C T G A A A A G G C G C G A C A G G A G G G A C G C G A C G A C G A C G A A T T G A C C C A G C G T C T T A A A G A T A G G A T G T C T A C A G T A T T A T C A A C C T A T G A G T C C C C C T T C A A A T C T T A G 50 100 150 200 250 300 350 400 450 Score = Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 100..120 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 116..134 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 116..150 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 135..150
Relationships
The following mRNA feature(s) are a part of this gene:
