Lag0001904 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001904
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L38, putative
Location	chr4: 36793841 .. 36794369 (-)
RNA-Seq Expression	Lag0001904
Synteny	Lag0001904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGTAAGTTTCTTCGGTAGAGTAGTTGAAGTTTTCAATTTTTTTTTCCTGGGGGGACTGAATTGTTATCGACAACATGTCATTTGCTCTGAGTAGACTTTGTTGAGTGTTATGGGAGTGGGTATGCTCATTACAGTGCAGCTCAACATATTCTTGATGTTTTTTTGGTTGAGGTCCAGGGCATTCTAGTAACTGTTTGAGATGCTCATTTTCTTCTTTAAATTTTGTGACTTTTGTATGGTCTCACTCATTTGCACTTCTTGTGTTTTTTGTTATGTGTTTTTTGTTATGTTATAATCAATTCTTATTCTTTTGTTCTATATTCCAATACACAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTGTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

mRNA sequence

ATGAACTCTGCAGCTCAACATATTCTTGATGTTTTTTTGGTTGAGGTCCAGGGCATTCTACCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTGTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Coding sequence (CDS)

ATGAACTCTGCAGCTCAACATATTCTTGATGTTTTTTTGGTTGAGGTCCAGGGCATTCTACCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTGTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Protein sequence

MNSAAQHILDVFLVEVQGILPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Homology

[Close]

BLAST of Lag0001904 vs. NCBI nr
Match: EEF28545.1 (60S ribosomal protein L38, putative [Ricinus communis])

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 3  SAAQHILDVFLVEVQGILPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 62
          S A+++L + + ++   LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY
Sbjct: 11 SKAEYMLSLDVGKLHYFLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 70

Query: 63 TLCVFDSEKADKLKQSLPPG 83
          TLCVFDSEKADKLKQSLPPG
Sbjct: 71 TLCVFDSEKADKLKQSLPPG 90

[Close]

BLAST of Lag0001904 vs. NCBI nr
Match: WP_139162005.1 (hypothetical protein, partial [Acinetobacter baumannii])

HSP 1 Score: 131.0 bits (328), Expect = 4.8e-27
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 16 VQGILPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 75
          V G LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 8  VSGTLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 67

Query: 76 KQSLPPG 83
          KQSLPPG
Sbjct: 68 KQSLPPG 74

[Close]

BLAST of Lag0001904 vs. NCBI nr
Match: EPS63478.1 (hypothetical protein M569_11305 [Genlisea aurea])

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-26
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 5  AQHILD-VFLVEVQGILPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYT 64
          A+H+LD   ++E    LPKQIHEIKDFLLTARRKDARSVKIKRSK+VVKFKVRCSKYLYT
Sbjct: 8  ARHMLDSSSIIENAPFLPKQIHEIKDFLLTARRKDARSVKIKRSKEVVKFKVRCSKYLYT 67

Query: 65 LCVFDSEKADKLKQSLPPG 83
          LCVFD EKADKLKQSLPPG
Sbjct: 68 LCVFDPEKADKLKQSLPPG 86

[Close]

BLAST of Lag0001904 vs. NCBI nr
Match: XP_017413899.1 (PREDICTED: C-terminal binding protein AN-like [Vigna angularis])

HSP 1 Score: 127.1 bits (318), Expect = 7.0e-26
Identity = 67/73 (91.78%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 10  DVFLVEVQGILPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDS 69
           D FL  VQ   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDS
Sbjct: 173 DKFLCFVQ---PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDS 232

Query: 70  EKADKLKQSLPPG 83
           EKADKLKQSLPPG
Sbjct: 233 EKADKLKQSLPPG 242

[Close]

BLAST of Lag0001904 vs. NCBI nr
Match: XP_038906668.1 (60S ribosomal protein L38-like [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 9.1e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 20  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
           +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 80  PPG 83
           PPG
Sbjct: 119 PPG 121

[Close]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-27
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 20 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
          +PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 80 PPG 83
          PPG
Sbjct: 61 PPG 63

[Close]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 20 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
          +PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 80 PPG 83
          PPG
Sbjct: 61 PPG 63

[Close]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.9e-24
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 20 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
          +PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 80 PPG 83
          PPG
Sbjct: 61 PPG 63

[Close]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 20 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
          +P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 80 PPG 83
          PPG
Sbjct: 61 PPG 63

[Close]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 20 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 79
          +P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 80 PPG 83
          PPG
Sbjct: 61 PPG 63

The following BLAST results are available for this feature:

BLAST of Lag0001904 vs. NCBI nr


Match Name	E-value	Identity	Description
EEF28545.1	3.7e-27	82.50	60S ribosomal protein L38, putative [Ricinus communis]	[more]
WP_139162005.1	4.8e-27	97.01	hypothetical protein, partial [Acinetobacter baumannii]	[more]
EPS63478.1	4.1e-26	83.54	hypothetical protein M569_11305 [Genlisea aurea]	[more]
XP_017413899.1	7.0e-26	91.78	PREDICTED: C-terminal binding protein AN-like [Vigna angularis]	[more]
XP_038906668.1	9.1e-26	98.41	60S ribosomal protein L38-like [Benincasa hispida]	[more]

BLAST of Lag0001904 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	1.0e-27	93.65	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	1.2e-25	88.89	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	8.9e-24	84.13	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q32PB9	1.4e-21	77.78	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
P63173	1.4e-21	77.78	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 21..82 e-value: 5.9E-32 score: 109.6
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 14..82
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 20..82 e-value: 7.5E-33 score: 114.4
None	No IPR available	PANTHER	PTHR10965:SF17	BNACNNG77070D PROTEIN	coord: 14..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001904.1	Lag0001904.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome