Lag0001899 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001899
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr4: 36736385 .. 36736761 (-)
RNA-Seq ExpressionLag0001899
SyntenyLag0001899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGGCGGTGCGGTTCCATGAATTCGTCAGGGACTCTGATTTAGCGGAAGGATGTTCCATGGTGGATGGGTTGAAGTTTGCTGCTGAAATGAGTTTCTTCCCTGTGATGATTGAGTCTGATTCTAAGCGTGTTTGTGAGATTATGCGAGGCAAAGGGTGGAATTTTCTGATATGAAAACGTTGGTTTCTGATGCTTTGGAGGTTTGACCGAAATCATGGCCGATTAAATTTGTCTTCTCTTTCCGTGAAGGGAACCGTTTAGCCCATCACTTGGCGAAATTAGCTTTGAATGAGCCGTTTGATTTTGTTTGGTTTGAAGAGGTTCCTGCATGTGTAGAGAACATCTTATTTCTTGATACTATTTCTCTGTAA

mRNA sequence

ATGGCGTCGGCGGTGCGGTTCCATGAATTCGTCAGGGACTCTGATTTAGCGGAAGGATGTTCCATGGTGGATGGGTTGAAGTTTGCTGCTGAAATGAGTTTCTTCCCTGTGATGATTGAGTCTGATTCTAAGCGTGTTTGGAACCGTTTAGCCCATCACTTGGCGAAATTAGCTTTGAATGAGCCGTTTGATTTTGTTTGGTTTGAAGAGGTTCCTGCATGTGTAGAGAACATCTTATTTCTTGATACTATTTCTCTGTAA

Coding sequence (CDS)

ATGGCGTCGGCGGTGCGGTTCCATGAATTCGTCAGGGACTCTGATTTAGCGGAAGGATGTTCCATGGTGGATGGGTTGAAGTTTGCTGCTGAAATGAGTTTCTTCCCTGTGATGATTGAGTCTGATTCTAAGCGTGTTTGGAACCGTTTAGCCCATCACTTGGCGAAATTAGCTTTGAATGAGCCGTTTGATTTTGTTTGGTTTGAAGAGGTTCCTGCATGTGTAGAGAACATCTTATTTCTTGATACTATTTCTCTGTAA

Protein sequence

MASAVRFHEFVRDSDLAEGCSMVDGLKFAAEMSFFPVMIESDSKRVWNRLAHHLAKLALNEPFDFVWFEEVPACVENILFLDTISL
Homology
[Close]
BLAST of Lag0001899 vs. NCBI nr
Match: GAY44284.1 (hypothetical protein CUMW_081010, partial [Citrus unshiu])

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-06
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 13  DSDLAEGCSMVDGLKFAAEMSFFPVMIESDSKRV------WNRLAHHLAKLALNEPFDFV 72
           D ++AE  ++++G+K AA+++  P++IESDSK V       N +AH L K+AL+     V
Sbjct: 32  DMEIAETYAILEGIKLAADVALSPLLIESDSKNVAYTPRSCNLVAHGLEKMALSSSEPQV 91

Query: 73  WFEEVPACVENIL 80
           W +EVP  +EN+L
Sbjct: 92  WIKEVPTEIENLL 104

[Close]
BLAST of Lag0001899 vs. NCBI nr
Match: ESR41266.1 (hypothetical protein CICLE_v10027237mg, partial [Citrus clementina])

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 13  DSDLAEGCSMVDGLKFAAEMSFFPVMIESDSKRV------WNRLAHHLAKLALNEPFDFV 72
           D ++AE  ++++G+K AA+++   ++IES+SK V       N +AH L K+AL+     V
Sbjct: 53  DMEIAETYAILEGIKLAADVALSLLLIESNSKNVAYTPRSCNLVAHGLEKMALSSSEPQV 112

Query: 73  WFEEVPACVENIL 80
           W +EVP  +EN+L
Sbjct: 113 WIKEVPTEIENLL 125

The following BLAST results are available for this feature:
BLAST of Lag0001899 vs. NCBI nr
Match NameE-valueIdentityDescription
GAY44284.18.4e-0641.10hypothetical protein CUMW_081010, partial [Citrus unshiu][more]
ESR41266.14.6e-0438.36hypothetical protein CICLE_v10027237mg, partial [Citrus clementina][more]
BLAST of Lag0001899 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001899.1Lag0001899.1mRNA