Lag0001867 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001867
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiongamma-secretase subunit APH1-like
Locationchr4: 36357647 .. 36358558 (-)
RNA-Seq ExpressionLag0001867
SyntenyLag0001867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTAGTGCTCTGCCAATACTGCGTTCTTGTTCTTGTTCTCTCCTTCGCAGCCATAGCTGCAAGCCTGCAAGCATAAGCGGACGTGTTCTGCCTTTAAACCCACCCCAAAAATGCTCTGTACTTCAAGCATTTGAAATTCATATATTAAGATCACTATATCATATAGCCTCTTAATCTTTTAAGAGGTTTTTGGGATTCCTTGGCCTTCATATCATTTAGTAATATCAATAGCAACTTAAGAAATAACTAACACATTCCATTACTTGGCCATGCCATGGTATATAACTGATCTGATATTTCACCCTCTCCATCTTTTCCTTTCCTGGTGCCTTAGTTTAGTTATTGTTTTTTTTTTTTTTTTTTTTCCAAAAAAAAAAAAATCTAATTTATATATTACCTTTTGTTTTCAGACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCATTTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAGCCGAAATCGACAGGGTAATCGATAACATCATTAACTCTTCTTCTGCAGTAATATTGCTAACTCAGCATCTTGAAGGTCTCTTCTAGAGAACATCTAATCCCACAGGTGTTATATCCATGTTTGTTCGTCCGCTGTTCATCTGGGAATCTGCAAGTGAAACACCCATGTTTTCGTAAGAACACGACGAACACAGACTTTCTAGCCTATGGAAATGCCGTTATGTTTCTTCTGAACAAGAATACAGTATTGACATGATATCACATTTATTAAAGTATTGATTATATTTCTCTGTTGCTTATGATTTCTTGAACTGTTCATTCAGAGATTTTGTGCTCAAGGCAAAGGGTATCAGCGGCATACTTCACTCAGCTGGTGAATGA

mRNA sequence

ATGATTGGTAGTGCTCTGCCAATACTGCGTTCTTGTTCTTGTTCTCTCCTTCGCAGCCATAGCTGCAAGCCTGCAAGCATAAGCGGACGTGTTCTGCCTTTAAACCCACCCCAAAAATGCTCTACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCATTTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAGCCGAAATCGACAGGGTGTTATATCCATGTTTGTTCGTCCGCTGTTCATCTGGGAATCTGCAAGTGAAACACCCATGTTTTCAGATTTTGTGCTCAAGGCAAAGGGTATCAGCGGCATACTTCACTCAGCTGGTGAATGA

Coding sequence (CDS)

ATGATTGGTAGTGCTCTGCCAATACTGCGTTCTTGTTCTTGTTCTCTCCTTCGCAGCCATAGCTGCAAGCCTGCAAGCATAAGCGGACGTGTTCTGCCTTTAAACCCACCCCAAAAATGCTCTACGCTGGTAAACTTTGCATCTGGAGGTTGTGTAATTGGTATACCTCTCCTATATATCATGGCATTTCTGACCTTGATTCACTGTGGGAAAATGGTTTGGAGAAGATTGATGGAAAGCCGAAATCGACAGGGTGTTATATCCATGTTTGTTCGTCCGCTGTTCATCTGGGAATCTGCAAGTGAAACACCCATGTTTTCAGATTTTGTGCTCAAGGCAAAGGGTATCAGCGGCATACTTCACTCAGCTGGTGAATGA

Protein sequence

MIGSALPILRSCSCSLLRSHSCKPASISGRVLPLNPPQKCSTLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQGVISMFVRPLFIWESASETPMFSDFVLKAKGISGILHSAGE
Homology
[Close]
BLAST of Lag0001867 vs. NCBI nr
Match: KAG6575355.1 (Gamma-secretase subunit APH1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 54/84 (64.29%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQGVISMFVRPLFIWESAS 101
           TLVNFASGGCVIGIPLLYIMA LTLIHCGKMVWRRLMESR+ Q                 
Sbjct: 204 TLVNFASGGCVIGIPLLYIMASLTLIHCGKMVWRRLMESRSSQ----------------- 263

Query: 102 ETPMFSDFVLKAKGISGILHSAGE 126
                 DFVLKAKGI   LHS GE
Sbjct: 264 ------DFVLKAKGIGCSLHSKGE 264

[Close]
BLAST of Lag0001867 vs. NCBI nr
Match: XP_022150431.1 (gamma-secretase subunit APH1-like isoform X1 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQG 86
           TLVNFASGGCVIGIPLLYIMA LTLIHCGKMVWRRLME+RNRQG
Sbjct: 204 TLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLMENRNRQG 247

[Close]
BLAST of Lag0001867 vs. NCBI nr
Match: XP_008445715.1 (PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQG 86
           TLVNFASGGCVIGIPLLYIMA LTLIHCGKMVWRRLME+R+RQG
Sbjct: 204 TLVNFASGGCVIGIPLLYIMAILTLIHCGKMVWRRLMENRSRQG 247

[Close]
BLAST of Lag0001867 vs. NCBI nr
Match: XP_022929902.1 (gamma-secretase subunit APH1-like [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQG 86
           TLVNFASGGCVIGIPLLYIMA LTLIHCGKMVWRRLMESR+ QG
Sbjct: 204 TLVNFASGGCVIGIPLLYIMASLTLIHCGKMVWRRLMESRSSQG 247

[Close]
BLAST of Lag0001867 vs. NCBI nr
Match: XP_023549211.1 (gamma-secretase subunit APH1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNRQG 86
           TLVNFASGGCVIGIPLLYIMA LTLIHCGKMVWRRLMESR+ QG
Sbjct: 204 TLVNFASGGCVIGIPLLYIMASLTLIHCGKMVWRRLMESRSSQG 247

[Close]
BLAST of Lag0001867 vs. ExPASy Swiss-Prot
Match: Q8L9G7 (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana OX=3702 GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-13
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 42  TLVNFASGGCVIGIPLLYIMAFLTLIHCGKMVWRRLMESRNR 84
           TLVNFAS GCVIG+PLLY++A LTL+HCGKMVW+RL+ESRN+
Sbjct: 204 TLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLESRNQ 245

The following BLAST results are available for this feature:
BLAST of Lag0001867 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575355.11.5e-1664.29Gamma-secretase subunit APH1-like protein, partial [Cucurbita argyrosperma subsp... [more]
XP_022150431.11.1e-1495.45gamma-secretase subunit APH1-like isoform X1 [Momordica charantia][more]
XP_008445715.14.2e-1493.18PREDICTED: gamma-secretase subunit APH1-like [Cucumis melo][more]
XP_022929902.11.6e-1393.18gamma-secretase subunit APH1-like [Cucurbita moschata][more]
XP_023549211.11.6e-1393.18gamma-secretase subunit APH1-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0001867 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9G73.7e-1378.57Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana OX=3702 GN=At2g31440 P... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001867.1Lag0001867.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007219 Notch signaling pathway
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0016485 protein processing
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0070765 gamma-secretase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030674 protein-macromolecule adaptor activity