Lag0001829 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001829
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor IBH1
Location	chr4: 35939492 .. 35939968 (-)
RNA-Seq Expression	Lag0001829
Synteny	Lag0001829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAATCCGGTCTAACCCTAATGAATTCTACCTCCTCGAGGCTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCTCAGAGACCCACCATCACCACCACCGCCACCGCCGTCGTCTCCCCGTTTGCTTCGGAGCTCAAACGGAGGAGTCGACGGATAAAAGTGGCAGCCTACTCCTCCATGGCTCGCGTGGCTGGGCCACGGCGAGCCTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACCCTGATGAGACGTCGTCGCCGCTCGACGACGACGATTCCCCGCTCGGACGATCAGGTCGAGAAGCTTCGCCGCTTGCTCCCGGGTGGCGACGCCATGGATGTGTGTACCTTGCTGGAGGAAACTGCCCATTACATCCATTGCCTCTCCACACAGGTTAAGGTCATGAAAGCCATATCTCAGCACTTGTCAACCAATTGA

mRNA sequence

ATGGCTTCCCAATCCGGTCTAACCCTAATGAATTCTACCTCCTCGAGGCTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCTCAGAGACCCACCATCACCACCACCGCCACCGCCGTCGTCTCCCCGTTTGCTTCGGAGCTCAAACGGAGGAGTCGACGGATAAAAGTGGCAGCCTACTCCTCCATGGCTCGCGTGGCTGGGCCACGGCGAGCCTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACCCTGATGAGACGTCGTCGCCGCTCGACGACGACGATTCCCCGCTCGGACGATCAGGTCGAGAAGCTTCGCCGCTTGCTCCCGGGTGGCGACGCCATGGATGTGTGTACCTTGCTGGAGGAAACTGCCCATTACATCCATTGCCTCTCCACACAGGTTAAGGTCATGAAAGCCATATCTCAGCACTTGTCAACCAATTGA

Coding sequence (CDS)

ATGGCTTCCCAATCCGGTCTAACCCTAATGAATTCTACCTCCTCGAGGCTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCTCAGAGACCCACCATCACCACCACCGCCACCGCCGTCGTCTCCCCGTTTGCTTCGGAGCTCAAACGGAGGAGTCGACGGATAAAAGTGGCAGCCTACTCCTCCATGGCTCGCGTGGCTGGGCCACGGCGAGCCTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACCCTGATGAGACGTCGTCGCCGCTCGACGACGACGATTCCCCGCTCGGACGATCAGGTCGAGAAGCTTCGCCGCTTGCTCCCGGGTGGCGACGCCATGGATGTGTGTACCTTGCTGGAGGAAACTGCCCATTACATCCATTGCCTCTCCACACAGGTTAAGGTCATGAAAGCCATATCTCAGCACTTGTCAACCAATTGA

Protein sequence

MASQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLSTQVKVMKAISQHLSTN

Homology

[Close]

BLAST of Lag0001829 vs. NCBI nr
Match: KAG7025295.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 119/158 (75.32%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 1   MASQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIK 60
           MAS+SG T MNS+SS LRLARTFLRSFSRIKS+RPT   + +A       EL+RRSRRIK
Sbjct: 1   MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAF------ELRRRSRRIK 60

Query: 61  VAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLP 120
           +AAYSSMARVAGP+RAWARALLFKL TRARH TLM RRRRST      DD V KLRRLLP
Sbjct: 61  IAAYSSMARVAGPQRAWARALLFKLNTRARHGTLM-RRRRSTMPSAYPDDHVGKLRRLLP 120

Query: 121 GGDAMDVCTLLEETAHYIHCLSTQVKVMKAISQHLSTN 159
           GGD MDVCTLLEETA YIHCLS QVKVM AI+ HLSTN
Sbjct: 121 GGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN 151

[Close]

BLAST of Lag0001829 vs. NCBI nr
Match: XP_008464343.1 (PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription factor IBH1 [Cucumis melo var. makuwa] >TYK01643.1 transcription factor IBH1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-46
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 3   SQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIKVA 62
           S+S +TL+NSTSSR R ARTFLR FSRIKSQR     +AT   +P   +LKR+S+RIK+ 
Sbjct: 4   SKSAITLLNSTSSRFRFARTFLRLFSRIKSQR-----SATFASAP-PDQLKRQSQRIKMV 63

Query: 63  AYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLPGG 122
           AYSSMARVAGPRRAWARALLFKLQTR RHRTLMRR+RR +T+    DDQV KLRRLLPGG
Sbjct: 64  AYSSMARVAGPRRAWARALLFKLQTRPRHRTLMRRKRRPSTS---PDDQVGKLRRLLPGG 123

Query: 123 DAMDVCTLLEETAHYIHCLSTQVKVMKAIS-QHLST 158
           + MDVCTLLEETA+YIHCLSTQVKVMKAIS QHLST
Sbjct: 124 ETMDVCTLLEETANYIHCLSTQVKVMKAISDQHLST 150

[Close]

BLAST of Lag0001829 vs. NCBI nr
Match: XP_023005092.1 (transcription factor IBH1 [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-46
Identity = 114/158 (72.15%), Postives = 125/158 (79.11%), Query Frame = 0


Query: 1   MASQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIK 60
           MA +SG+T MNS+SS LRLARTFLRSFSRIKS+RPT   + +A       EL+RRSRRIK
Sbjct: 1   MAYESGITPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAF------ELRRRSRRIK 60

Query: 61  VAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLP 120
           +AAYSSMARVAGP+R WARALLFKL TRARHRT M RRR ST      DD V KLRRL+P
Sbjct: 61  IAAYSSMARVAGPQRTWARALLFKLNTRARHRTSM-RRRCSTMPSAYPDDHVGKLRRLVP 120

Query: 121 GGDAMDVCTLLEETAHYIHCLSTQVKVMKAISQHLSTN 159
           GGD MDVCTLLEETA YIHCLS QVKVM AI+ HLS N
Sbjct: 121 GGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSKN 151

[Close]

BLAST of Lag0001829 vs. NCBI nr
Match: KAG6575326.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013866.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-41
Identity = 109/159 (68.55%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MASQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIK 60
           MAS+SG T + STSS LRLARTFLRSF+ IKSQ P I         P   EL+RRSRRIK
Sbjct: 1   MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAIL--------PSPPELRRRSRRIK 60

Query: 61  VAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLP 120
           + AYSSMAR AGPR AWARALLFKL+TRARHRTL+ RRR       RSDD+V KLRRL+P
Sbjct: 61  MMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHH----HRSDDRVGKLRRLVP 120

Query: 121 GGDAMDVCTLLEETAHYIHCLSTQVKVMKAISQH-LSTN 159
           GG++MDVCTLLEET  YI CLS QVKVMKAI  H  STN
Sbjct: 121 GGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN 147

[Close]

BLAST of Lag0001829 vs. NCBI nr
Match: XP_023548405.1 (transcription factor IBH1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-38
Identity = 105/159 (66.04%), Postives = 117/159 (73.58%), Query Frame = 0


Query: 1   MASQSGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIK 60
           MAS+SG T + STS+ LRLARTFLRSF+ IKSQ P I         P   ELKR+SRRIK
Sbjct: 1   MASKSGRTPIRSTSTALRLARTFLRSFANIKSQEPAIL--------PSPPELKRQSRRIK 60

Query: 61  VAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLP 120
           + AYSSMAR AGPR AWARALLFKL+ RARHRTL+ RRR        SDD+V KLRRL+P
Sbjct: 61  MVAYSSMARAAGPRCAWARALLFKLRMRARHRTLITRRRYH----HHSDDRVGKLRRLVP 120

Query: 121 GGDAMDVCTLLEETAHYIHCLSTQVKVMKAISQH-LSTN 159
           GG+ MDVC+LLEET  YI CL TQVKVMKAI  H  STN
Sbjct: 121 GGERMDVCSLLEETGEYIQCLRTQVKVMKAICDHQFSTN 147

[Close]

BLAST of Lag0001829 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 0


Query: 23  FLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIKVAAYSSMARVA-GPRRAWARAL 82
           FL+S S ++ Q P  T            +   R R+IK AAY SMAR A G  R W+RAL
Sbjct: 22  FLQSLSNLRKQNPFDT----------PDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRAL 81

Query: 83  LFK--------LQTRARHRTLMRRRRRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEE 142
           L +        ++   R   +  +RRRS    P  ++  E+LR L+PGG  M+   L+EE
Sbjct: 82  LRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGGGGMETSKLMEE 141

Query: 143 TAHYIHCLSTQVKVMKAISQHLS 157
           TAHYI CLS QVKVM+ +   LS
Sbjct: 142 TAHYIKCLSMQVKVMQCLVDGLS 154

[Close]

BLAST of Lag0001829 vs. ExPASy Swiss-Prot
Match: Q7XR02 (Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 64/176 (36.36%), Postives = 87/176 (49.43%), Query Frame = 0


Query: 12  STSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIKVAAYSSMARVA 71
           + +++  LA  FLR+ SRI    P                + RR+R I+ AAYSSMAR A
Sbjct: 37  AAATKHMLAFHFLRALSRIHRATP----------------VTRRTRTIRRAAYSSMARAA 96

Query: 72  GPRRAWARALLFKLQTRARHRTLMRR-----RRR---------------------STTTI 131
            PRRAW+RALL +++ R R RTLMRR     RRR                      T+  
Sbjct: 97  SPRRAWSRALLGQVRAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAGETSAA 156

Query: 132 PRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLSTQVKVMKAI 152
            R+            + E LRRL+PGG  M+  +LLEETA Y+  L  QV++M+ +
Sbjct: 157 ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGL 195

[Close]

BLAST of Lag0001829 vs. ExPASy Swiss-Prot
Match: Q01I07 (Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-11
Identity = 63/176 (35.80%), Postives = 86/176 (48.86%), Query Frame = 0


Query: 12  STSSRLRLARTFLRSFSRIKSQRPTITTTATAVVSPFASELKRRSRRIKVAAYSSMARVA 71
           + +++  LA  FLR+ SRI    P                + RR+R I+ AAYSSMAR A
Sbjct: 37  AAATKHMLAFHFLRALSRIHRATP----------------VTRRTRTIRRAAYSSMARAA 96

Query: 72  GPRRAWARALLFKLQTRARHRTLMRR-----RRR---------------------STTTI 131
            PRRAW+RALL + + R R RTLMRR     RRR                      T+  
Sbjct: 97  SPRRAWSRALLGQARAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAGETSAA 156

Query: 132 PRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLSTQVKVMKAI 152
            R+            + + LRRL+PGG  M+  +LLEETA Y+  L  QV++M+ +
Sbjct: 157 ARAVPPPPRQQGEPPRADALRRLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGL 195

The following BLAST results are available for this feature:

BLAST of Lag0001829 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025295.1	1.5e-48	75.32	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008464343.1	1.8e-46	75.00	PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription ...	[more]
XP_023005092.1	6.9e-46	72.15	transcription factor IBH1 [Cucurbita maxima]	[more]
KAG6575326.1	3.9e-41	68.55	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_023548405.1	1.4e-38	66.04	transcription factor IBH1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0001829 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKX1	4.2e-14	40.56	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]
Q7XR02	2.6e-11	36.36	Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 ...	[more]
Q01I07	9.7e-11	35.80	Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 3..156
None	No IPR available	PANTHER	PTHR33124:SF76	TRANSCRIPTION FACTOR IBH1-LIKE	coord: 3..156
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 111..151 e-value: 5.43679E-13 score: 58.4028
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 88..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001829.1	Lag0001829.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding